Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

12068683 .. 12071812

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGGGCAAGTTTATGCAATTTAAACCCCTCCTAGCAGCTCTCCGATCGACGCTGGACTCTATACAACCGCTGATCATCCGACAGATAGGTGAGCATAACTTGAAACTGGATCTCCCAAACGAAGAGATACGTGAGCTTGAGAAACAAATGAAGGAAGGCGAAGAACTTATTTGCAAGTTGTCAAAGCTTCGGTGGTGGAACCGCATCAAGTCTCGCTACACCAGCCAACTTGTTGAGTTGGATAGGTCTCTTAAAGGGCTTTTGAAACAAGTACTTATGCAGCAAGCAAGGGATATTAAGGAGAACTTGCTCGTAGCCAAGCAAACCGCCAGACAACTTGTCGAATTCCAAGAGTTTAATGAAAGACTGTTAAGAGAGAGGACTTTGCTGCAAGAAGATGCGAGGGAATCACAGGAGAAGTTCCTATTGGCACTGCAAAACAACGGGAAAAAATTAGTTGAATTGCAAGCAGTAATAGAAGAAATGATGAAGCAGCAAGAAGCAAGAGATGTTACTAATGCAGTAGCAGCAGTAGAAGGGAATCAGCTTGAAGAGCCTAATCTGATGTCAATATTCAAGGATCTCTATGAAGCTCTTCAGCAGCTGTTCAACGAAAATAGCACATATAAACCTGTCCTCAGAAGCATCAAGTCTACTTTAGACTCTTTACCACCACTTATTGAAGTGACAGAAAACACAATCTATCTCCGAGTACACGAAAGTTTGAAGGAGATCCTATTGGAGCAGGATCGCGAGCAGTATCGGGAGCTGAAGGAGAAATTGAAAAATGTTAGAATGCAAATGCTAGAGGGCGTCGAGCTCTTCCGCAACTTCTCAAAACATCATCCATGGAACTTCTGCAAGAAGTCCCATAACGCGTACAAATTAATTCAATGGGATGAATCTCTTCAAAGACATGTAAAAAAATTAATGGAGAAGAAACGAAGCATCAAAAGTAATTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

323

Amino Acids

38.42

Weight (kDa)

9.05

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	4 - 114	7.1e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	656
AccII	CGCG	2 cut(s)	756, 881
AciI	CCGC	4 cut(s)	71, 205, 330, 829
AclWI	GGATC	4 cut(s)	120, 591, 730, 759
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	584, 794
AcyI	GRCGYC	1 cut(s)	816
AfaI	GTAC	3 cut(s)	276, 717, 884
AflIII	ACRYGT	2 cut(s)	879, 919
AhdI	GACNNNNNGTC	1 cut(s)	341
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	8 cut(s)	41, 139, 190, 550, 596, 607, 772, 823
AluI	AGCT	8 cut(s)	41, 139, 190, 550, 596, 607, 772, 823
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	219, 255
AlwI	GGATC	4 cut(s)	120, 591, 730, 759
AlwNI	CAGNNNCTG	1 cut(s)	607
ApeKI	GCWGC	6 cut(s)	38, 283, 391, 496, 530, 604
ApoI	RAATTY	1 cut(s)	347
AseI	ATTAAT	2 cut(s)	890, 932
Asp700I	GAANNNNTTC	2 cut(s)	597, 909
AsuHPI	GGTGA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	6 cut(s)	50, 295, 378, 508, 542, 616
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	219, 255
BfaI	CTAG	2 cut(s)	35, 809
BisI	GCNGC	6 cut(s)	39, 284, 392, 497, 531, 605
BlsI	GCNGC	6 cut(s)	40, 285, 393, 498, 532, 606
BmcAI	AGTACT	1 cut(s)	276
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	203
BmsI	GCATC	4 cut(s)	216, 391, 657, 960
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	851
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	3 cut(s)	78, 847, 907
BseMII	CTCAG	1 cut(s)	655
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	6 cut(s)	50, 295, 378, 508, 542, 616
Bsh1236I	CGCG	2 cut(s)	756, 881
Bsh1285I	CGRYCG	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	825
BslFI	GGGAC	1 cut(s)	856
BsmAI	GTCTC	2 cut(s)	219, 255
BsmFI	GGGAC	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	804
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp143I	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
Bsp19I	CCATGG	1 cut(s)	851
Bsp68I	TCGCGA	1 cut(s)	756
BspACI	CCGC	4 cut(s)	71, 205, 330, 829
BspCNI	CTCAG	1 cut(s)	654
BspFNI	CGCG	2 cut(s)	756, 881
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	4 cut(s)	120, 591, 730, 759
BspQI	GCTCTTC	3 cut(s)	549, 603, 830
BspTNI	GGTCTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
BssNI	GRCGYC	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	851
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	5 cut(s)	120, 549, 603, 830, 915
BstACI	GRCGYC	1 cut(s)	816
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	288, 471, 758
BstDEI	CTNAG	1 cut(s)	641
BstDSI	CCRYGG	1 cut(s)	851
BstF5I	GGATG	3 cut(s)	78, 847, 907
BstFNI	CGCG	2 cut(s)	756, 881
BstKTI	GATC	6 cut(s)	50, 78, 115, 586, 738, 754
BstMAI	GTCTC	2 cut(s)	219, 255
BstMBI	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 530, 556
BstNSI	RCATGY	1 cut(s)	923
BstUI	CGCG	2 cut(s)	756, 881
BstV1I	GCAGC	6 cut(s)	50, 295, 378, 508, 542, 616
BstX2I	RGATCY	3 cut(s)	112, 583, 735
BstYI	RGATCY	3 cut(s)	112, 583, 735
BtgI	CCRYGG	1 cut(s)	851
BtsCI	GGATG	3 cut(s)	78, 847, 907
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
BtuMI	TCGCGA	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	288, 471, 758
CaiI	CAGNNNCTG	1 cut(s)	607
CseI	GACGC	2 cut(s)	61, 805
Csp6I	GTAC	3 cut(s)	275, 716, 883
CviAII	CATG	2 cut(s)	852, 920
CviQI	GTAC	3 cut(s)	275, 716, 883
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	6 cut(s)	49, 77, 114, 585, 737, 753
DpnII	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
DraI	TTTAAA	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	5 cut(s)	120, 549, 603, 830, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	5 cut(s)	120, 549, 603, 830, 915
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	2 cut(s)	584, 794
EcoICRI	GAGCTC	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	2 cut(s)	855, 923
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	2 cut(s)	851, 919
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	6 cut(s)	39, 284, 392, 497, 531, 605
FokI	GGATG	3 cut(s)	65, 834, 914
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	6 cut(s)	39, 284, 392, 497, 531, 605
FspBI	CTAG	2 cut(s)	35, 809
GluI	GCNGC	6 cut(s)	39, 284, 392, 497, 531, 605
HgaI	GACGC	2 cut(s)	61, 805
Hin1I	GRCGYC	1 cut(s)	816
Hin1II	CATG	2 cut(s)	855, 923
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	59, 410, 544, 665, 905
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	657, 718
Hpy188I	TCNGA	6 cut(s)	47, 83, 567, 644, 713, 971
Hpy188III	TCNNGA	2 cut(s)	755, 767
Hpy8I	GTNNAC	2 cut(s)	657, 718
Hpy99I	CGWCG	2 cut(s)	55, 821
HpyAV	CCTTC	5 cut(s)	148, 152, 533, 724, 769
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	9 cut(s)	19, 177, 283, 394, 439, 469, 524, 802, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 530, 556
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	133
Hsp92I	GRCGYC	1 cut(s)	816
Hsp92II	CATG	2 cut(s)	855, 923
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
LguI	GCTCTTC	3 cut(s)	549, 603, 830
LmnI	GCTCC	2 cut(s)	745, 769
LpnPI	CCDG	7 cut(s)	41, 95, 238, 346, 401, 648, 734
Lsp1109I	GCAGC	6 cut(s)	50, 295, 378, 508, 542, 616
LweI	GCATC	4 cut(s)	216, 391, 657, 960
MaeI	CTAG	2 cut(s)	35, 809
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	2 cut(s)	514, 688
MalI	GATC	6 cut(s)	49, 77, 114, 585, 737, 753
MboI	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
MboII	GAAGA	9 cut(s)	137, 176, 410, 494, 566, 590, 817, 902, 952
MflI	RGATCY	3 cut(s)	112, 583, 735
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	9 cut(s)	20, 347, 455, 464, 782, 887, 891, 929, 961
MluI	ACGCGT	1 cut(s)	879
MlyI	GAGTC	2 cut(s)	53, 659
MmeI	TCCRAC	2 cut(s)	106, 222
MnlI	CCTC	5 cut(s)	41, 375, 399, 650, 805
MroXI	GAANNNNTTC	2 cut(s)	597, 909
MseI	TTAA	7 cut(s)	24, 255, 300, 360, 374, 890, 932
MspA1I	CMGCKG	2 cut(s)	73, 607
Mva1269I	GAATGC	1 cut(s)	804
MvnI	CGCG	2 cut(s)	756, 881
MwoI	GCNNNNNNNGC	3 cut(s)	225, 530, 556
NcoI	CCATGG	1 cut(s)	851
NdeII	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
NlaIII	CATG	2 cut(s)	855, 923
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	688
NruI	TCGCGA	1 cut(s)	756
NspI	RCATGY	1 cut(s)	923
PciI	ACATGT	1 cut(s)	919
PciSI	GCTCTTC	3 cut(s)	549, 603, 830
PctI	GAATGC	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	597, 909
PfeI	GAWTC	3 cut(s)	410, 544, 905
PkrI	GCNGC	6 cut(s)	40, 285, 393, 498, 532, 606
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	2 cut(s)	53, 659
PpsI	GAGTC	2 cut(s)	53, 659
Ppu21I	YACGTR	1 cut(s)	134
PscI	ACATGT	1 cut(s)	919
PshBI	ATTAAT	2 cut(s)	890, 932
Psp124BI	GAGCTC	1 cut(s)	825
PspN4I	GGNNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	112, 583, 735
PvuI	CGATCG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	607
RruI	TCGCGA	1 cut(s)	756
RsaI	GTAC	3 cut(s)	276, 717, 884
RsaNI	GTAC	3 cut(s)	275, 716, 883
SacI	GAGCTC	1 cut(s)	825
SapI	GCTCTTC	3 cut(s)	549, 603, 830
SaqAI	TTAA	7 cut(s)	24, 255, 300, 360, 374, 890, 932
SatI	GCNGC	6 cut(s)	39, 284, 392, 497, 531, 605
Sau3AI	GATC	6 cut(s)	47, 75, 112, 583, 735, 751
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	2 cut(s)	53, 659
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	4 cut(s)	216, 391, 657, 960
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	9 cut(s)	20, 347, 455, 464, 782, 887, 891, 929, 961
SsiI	CCGC	4 cut(s)	71, 205, 330, 829
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	35, 809
SstI	GAGCTC	1 cut(s)	825
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	50, 345, 819
TasI	AATT	9 cut(s)	20, 347, 455, 464, 782, 887, 891, 929, 961
TatI	WGTACW	2 cut(s)	274, 715
TfiI	GAWTC	3 cut(s)	410, 544, 905
Tru1I	TTAA	7 cut(s)	24, 255, 300, 360, 374, 890, 932
Tru9I	TTAA	7 cut(s)	24, 255, 300, 360, 374, 890, 932
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	6 cut(s)	38, 283, 391, 496, 530, 604
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	5 cut(s)	167, 378, 506, 606, 918
TspRI	CASTG	1 cut(s)	441
VspI	ATTAAT	2 cut(s)	890, 932
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	656
XmnI	GAANNNNTTC	2 cut(s)	597, 909
XspI	CTAG	2 cut(s)	35, 809
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.