Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8017010.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 516

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8017010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

atgaaggagtacatcatccgcctcgtctacgtcgaaatgttaggccacgacgcgtcgttcgcctacatccatgcggtgaagatgacgcacgacggcaatctcgtcttcaagcgcaccggctacctcgccgtctcgctcttcctcaacgacgatcactacctcatcattctcatcgtcaacacaatccagaaggacttgaagtctgacaattacctcgtcgtttgcaccgccctcaatgccgtctgcaagctcatcaacgacgagactgttcccgccgtttttccacaggttgtggagctcctagggcgccagaaggaggctgtgaggaagaaggcgatcatggcgctccatcggttttatcagaaatcgccgtcgtcggtttcgtatctggtgtcgaatttccggaagtggctctgtgataacgatcctggagtgatgggagccacgctgtgcccgttgttcgatctcattaccatcgatgtgaatacgtataaggatttggtggttagctttgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

7.67

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	4 cut(s)	19, 74, 228, 273
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	109, 199
AhdI	GACNNNNNGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	3 cut(s)	250, 298, 510
AluI	AGCT	3 cut(s)	250, 298, 510
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	136, 257
AlwI	GGATC	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	3 cut(s)	114, 309, 346
AsuHPI	GGTGA	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	3 cut(s)	357, 430, 482
BceAI	ACGGC	5 cut(s)	109, 113, 224, 260, 355
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	136, 257
BfaI	CTAG	1 cut(s)	302
BfoI	RGCGCY	2 cut(s)	310, 347
BlnI	CCTAGG	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	429
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	308, 442
BmrFI	CCNGG	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	2 cut(s)	15, 66
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	117, 403
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	136, 257
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	300, 455
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	4 cut(s)	151, 336, 424, 463
BspACI	CCGC	4 cut(s)	19, 74, 228, 273
BspANI	GGCC	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	477
BspEI	TCCGGA	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	308, 442
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	151, 336, 424, 463
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	15, 66
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	2 cut(s)	310, 347
BstHHI	GCGC	3 cut(s)	114, 309, 346
BstKTI	GATC	4 cut(s)	154, 339, 427, 466
BstMAI	GTCTC	2 cut(s)	136, 257
BstMBI	GATC	4 cut(s)	151, 336, 424, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 236, 304, 341
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	455
BstSNI	TACGTA	1 cut(s)	489
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	15, 66
Cac8I	GCNNGC	1 cut(s)	248
CfoI	GCGC	3 cut(s)	114, 309, 346
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	3 cut(s)	42, 59, 94
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	71, 340
CviJI	RGCY	8 cut(s)	45, 120, 250, 298, 320, 412, 443, 510
CviKI_1	RGCY	8 cut(s)	45, 120, 250, 298, 320, 412, 443, 510
CviQI	GTAC	1 cut(s)	10
DinI	GGCGCC	1 cut(s)	308
DpnI	GATC	4 cut(s)	153, 338, 426, 465
DpnII	GATC	4 cut(s)	151, 336, 424, 463
DraIII	CACNNNGTG	1 cut(s)	450
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	298
Eco105I	TACGTA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	74, 343
FaiI	YATR	3 cut(s)	72, 341, 492
FatI	CATG	2 cut(s)	70, 339
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	2 cut(s)	2, 53
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	3 cut(s)	113, 308, 345
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	2 cut(s)	310, 347
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	2 cut(s)	117, 403
HgaI	GACGC	3 cut(s)	42, 59, 94
HhaI	GCGC	3 cut(s)	114, 309, 346
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	74, 343
Hin6I	GCGC	3 cut(s)	112, 307, 344
HinP1I	GCGC	3 cut(s)	112, 307, 344
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	117, 403
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	28, 178
Hpy188I	TCNGA	2 cut(s)	205, 363
Hpy188III	TCNNGA	2 cut(s)	187, 403
Hpy8I	GTNNAC	2 cut(s)	28, 178
Hpy99I	CGWCG	9 cut(s)	35, 53, 58, 95, 152, 221, 263, 376, 379
HpyAV	CCTTC	3 cut(s)	184, 307, 325
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	30, 488
HpyCH4V	TGCA	2 cut(s)	225, 246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 236, 304, 341
HpySE526I	ACGT	2 cut(s)	30, 488
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	74, 343
HspAI	GCGC	3 cut(s)	112, 307, 344
KasI	GGCGCC	1 cut(s)	306
Kpn2I	TCCGGA	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	151, 336, 424, 463
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	4 cut(s)	295, 303, 351, 440
LpnPI	CCDG	8 cut(s)	130, 200, 272, 323, 374, 414, 416, 441
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	30, 488
MalI	GATC	4 cut(s)	153, 338, 426, 465
MboI	GATC	4 cut(s)	151, 336, 424, 463
MboII	GAAGA	4 cut(s)	91, 97, 130, 340
MhlI	GDGCHC	2 cut(s)	300, 455
MluCI	AATT	2 cut(s)	208, 397
MluI	ACGCGT	1 cut(s)	51
Mly113I	GGCGCC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	32, 134, 152, 170, 224, 242, 310, 318
MroI	TCCGGA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	2 cut(s)	117, 403
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	59, 236, 304, 341
NarI	GGCGCC	1 cut(s)	307
NdeII	GATC	4 cut(s)	151, 336, 424, 463
NlaIII	CATG	2 cut(s)	74, 343
NlaIV	GGNNCC	2 cut(s)	308, 442
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 99, 380, 452
PfoI	TCCNGGA	1 cut(s)	427
PluTI	GGCGCC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	308, 442
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	151, 336, 424, 463
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	300, 455
SetI	ASST	9 cut(s)	33, 126, 162, 216, 252, 291, 300, 491, 512
SfoI	GGCGCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	479
SnaBI	TACGTA	1 cut(s)	489
Sse9I	AATT	2 cut(s)	208, 397
SsiI	CCGC	4 cut(s)	19, 74, 228, 273
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	33, 491
TaqI	TCGA	4 cut(s)	33, 395, 462, 477
TasI	AATT	2 cut(s)	208, 397
TatI	WGTACW	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.