Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

4764277 .. 4772731

Gene Structure 8455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1052000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCGATGGGCTCCCAGGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCGGAGGAGGAGCGCATCGTCCTCCTCGAGATCGAAACCCTTAAACGACGTCTCTCCGAGCCCGATATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGCCACGACGGCTCCTTCGCCTACATTCACGCCGTTAAGATGACTCACGACGACAACCTCCTCCTCAAGCGCACCGGTTACCTCGCCGTTTCCCTCTTCCTCAGCGACGATCACGATTTGATCATCTTGATCGTCAACACCATCCAGAAGGATCTCAGGTCTGACAATTACCTCGTCGTTTGCGCCGCCCTCAATGCCGTTTGCAAGCTCATCAACGACGAGACTGTGCCTGCCGTTTTGCCCCAGGTCGTCGACCTCCTCGCCCATCCCAAGGAGGCTGTCAGGAAGAAGGCAATCATGGCGCTTCACCGATTTTATCAGAAATCGCCCTCCTCTGTTTCGCATCTGGTGTCAAATTTTCGGAAGCGGCTTTGCGATAACGATCCGGGCGTCATGGGTGCCACGCTCTGCTCGCTGTTCGATCTAATTACCATCGATGCGAATTCTTTTAAGGATTTGGTGGTCAGCTTTGTCAGCATTCTCAAGCAGGTCGCCGAGCGCAGGTTGCCCAAGGCCTACGATTACCATCAGCTTCCGGCGCCCTTTATCCAGATTAGGTTGTTGAAAATTCTAGCATTGTTGGGGAGTGGTGATAAGCAATCGAGTGAGCAGATGTATACAGTAGTTGGCGATATATTTCGGAAGTGTGATTCCTCAAGTAATATTGGAAATGCTGTTCTTTATGAGTGCATTTGTTGCGTTTCTTCCATATATCCCAATCCTAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATTGATGCCCTTGGTCGACTGATAAAGATTAGTCCAGAGATAGCCGAGCAACACCAACTAGCCGTCATTGATTGCTTAGAGGACCCAGATGATACTTTGAAACGAAAAACGTTTGAACTATTGTACAAGATGACCAAGTCCTCCAATGTGGAAGTGATTGTGGATCGTATGATTGATTACATGATTAGCATTAATGACAACCATTACAAAACTTACATAGCTTCGCGATGTGTGGAGCTTGCAGAGCAATTTGCCCCAAGTAATCAATGGTTTATCCTGACCATGAATAAAGTCTTTGAACATGCGGGGGATCTAGTGAATGTTAAGGTGGCACATAACTTGATGAAGTTGATCGCCGAGGGATTTGGAGAGGATGATGATGATGCAGATAGTCAGTTGAGATCATCTGCAGTGGAGTCATATTTGCGTATAATTGGTGAGCCAAAGCTTCCATCTGTATTTCTTCAGGTCATTTGTTGGGTTTTGGGAGAATATGGAACTGCTGATGGAAAATATTCTGCTTCCTATATCACTGGGAAGTTATGTGATGTTGCAGAGGCATATTCAAATGATGAATCCGTCAAGGCTTATGCCGTTACAGCAATCATGAAAATATATGCGTTTGAAATATCAGCTGGGAGAAATGTTGATTTCCTACCTGAGTGTCAATCTTTGGTGGAAGAACTATCAGCTTCTCACTCAACAGATCTGCAGCAGCGTGCATATGAATTGCAAGCTGTCATTAGCTTAGATGCTCCTGCTGTTGAGAGTATAATGCCACCAGACGCAAGTTGTGAAGACATTGAGATTGATAAAAACCTTTCATTCCTCAATGGCTATGTCCAAGAAGCACTAGAAAAAGGTGCTCAGCCCTATATTCCTGAGAATGAGCGCTCTGGAGTGTTAGATATCAGCAACTTTGGAAACCAAGATCACCATGAAGCTTTAACCCATAGTCTTAAGTTTGAGGCATATGAGCTTCCAAAGCCAGTAATGCCATCAAGAGTTCCTCCAGCTGCAGTTGCTTCCTCAACTGAGCTTGTTCCAGTGCCTGAACCATCTTATGCAAGGGAGACCCGCCAGCCTGCATCATTGCCATCTGTGTCAGATGCAGGATCATCAGAACTTAAGCTACGACTCGACGGTGTTCAAAAAAAATGGGGCAGGCCAACATATTCTTCTTCTGCATCGCCGAGCACGAATTCTTCAAGTTCTACTTCCCACAAAACAACGAATGGGGTCACTCAAGTAGATAGCGTGGGCAATTCGAATTTAAAAGCCCGTGATACTTATGATTCGAGGCGGCCACAGGTTGAAATTTCTCCAGAAAAGCAGAAGCTTGCCTCTTCACTGTTTGGAGGTCCATCAAAAACCGAGAAGAGGCCATCTTCTGCCAACCATAAGGCGTCTAAGGCGAGTACCCATACTTCAGAGAAGTCCCAAGCGCCAAAGGCAGCAGCTGTACAAGCTGAAGTTAATCGTGAACCTGCTCCAGACTTGCTCGACTTGGGTGACTCAACTAGTAGTAGTTCTGCTCCGGCCATAGATCCTTTCAAGCAGTTAGAAGGGCTTCTTGATCAAACTGATGTCGCTTCGAATGTGAACCATGGTACAGCAGGTGCTGCTAAGGCACCTGATTTTATGGGATTATATGCAGATACACCTGTCAGTGGGCTCGGTAGCAGTGTTGGGGATCTTTTGCCGACCAACAGAGATGAGTTTAATCTTACATCTGAGTTATCAAATGCCACAAGGACTGCTCAAGGCGGGGTAACACAGTTTAATAAGGGTCCTAACCCTAAAGATGCCTTGGAAAAGGATTCACTTGTAAGGCAGATGGGCGTGACGCCAACAAGTCCGAATCCCAACTTGTTTCGAGATTTGCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

976

Amino Acids

107.03

Weight (kDa)

5.46

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 595	1.1e-83	Adaptin N terminal region
Cnd1	PF12717	140 - 299	2.3e-07	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2642
AatII	GACGTC	1 cut(s)	166
Acc36I	ACCTGC	4 cut(s)	715, 729, 2530, 2642
AccB1I	GGYRCC	3 cut(s)	635, 775, 2665
AccI	GTMKAC	4 cut(s)	222, 489, 854, 1051
AccII	CGCG	2 cut(s)	35, 1261
AciI	CCGC	9 cut(s)	51, 116, 214, 423, 604, 1340, 2113, 2338, 2802
AclI	AACGTT	1 cut(s)	1145
AclWI	GGATC	8 cut(s)	102, 396, 614, 1206, 1353, 2158, 2576, 2736
AcoI	YGGCCR	5 cut(s)	22, 58, 238, 2339, 2574
AcsI	RAATTY	6 cut(s)	592, 679, 804, 2236, 2305, 2352
AcuI	CTGAAG	3 cut(s)	1484, 2448, 2526
AcyI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
AfaI	GTAC	5 cut(s)	206, 1160, 2455, 2499, 2647
AfeI	AGCGCT	1 cut(s)	1928
AfiI	CCNNNNNNNGG	6 cut(s)	24, 67, 508, 738, 2415, 2705
AflII	CTTAAG	2 cut(s)	1994, 2162
AgeI	ACCGGT	1 cut(s)	311
AhlI	ACTAGT	1 cut(s)	2555
AjnI	CCWGG	2 cut(s)	45, 480
AjuI	GAANNNNNNNTTGG	2 cut(s)	2197, 2229
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
Alw21I	GWGCWC	3 cut(s)	33, 1903, 2234
Alw26I	GTCTC	3 cut(s)	170, 452, 2102
AlwI	GGATC	8 cut(s)	102, 396, 614, 1206, 1353, 2158, 2576, 2736
AlwNI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
Ama87I	CYCGRG	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	1928
AoxI	GGCC	8 cut(s)	22, 58, 238, 750, 2201, 2339, 2417, 2574
ApeKI	GCWGC	8 cut(s)	7, 977, 1747, 1750, 2051, 2489, 2492, 2657
ApoI	RAATTY	6 cut(s)	592, 679, 804, 2236, 2305, 2352
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AseI	ATTAAT	1 cut(s)	1227
AsiGI	ACCGGT	1 cut(s)	311
Asp700I	GAANNNNTTC	2 cut(s)	1549, 2604
AspLEI	GCGC	9 cut(s)	129, 192, 309, 422, 541, 738, 778, 1929, 2482
AspS9I	GGNCC	3 cut(s)	1117, 2396, 2825
AsuC2I	CCSGG	2 cut(s)	26, 624
AsuHPI	GGTGA	5 cut(s)	536, 839, 1484, 1961, 2558
AsuII	TTCGAA	2 cut(s)	2303, 2630
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	1117, 2396, 2825
BaeI	ACNNNNGTAYC	2 cut(s)	2685, 2718
BanI	GGYRCC	3 cut(s)	635, 775, 2665
BanII	GRGCYC	4 cut(s)	33, 44, 177, 2712
BarI	GAAGNNNNNNTAC	2 cut(s)	2446, 2478
BbsI	GAAGAC	1 cut(s)	1839
Bbv12I	GWGCWC	3 cut(s)	33, 1903, 2234
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	8 cut(s)	19, 964, 1759, 1762, 2038, 2501, 2504, 2644
BceAI	ACGGC	7 cut(s)	254, 262, 308, 419, 455, 1082, 1613
BciT130I	CCWGG	2 cut(s)	47, 482
BclI	TGATCA	2 cut(s)	357, 2611
BcnI	CCSGG	2 cut(s)	26, 624
BcoDI	GTCTC	3 cut(s)	170, 452, 2102
BcuI	ACTAGT	1 cut(s)	2555
BfaI	CTAG	5 cut(s)	809, 1094, 1349, 1889, 2556
BfmI	CTRYAG	3 cut(s)	1443, 1745, 2052
BfoI	RGCGCY	4 cut(s)	542, 779, 1930, 2483
BfrI	CTTAAG	2 cut(s)	1994, 2162
BfuAI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
BglI	GCCNNNNNGGC	1 cut(s)	246
BglII	AGATCT	1 cut(s)	1741
BlpI	GCTNAGC	1 cut(s)	1902
Bme1390I	CCNGG	4 cut(s)	26, 47, 482, 624
Bme18I	GGWCC	3 cut(s)	1117, 2396, 2825
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	3 cut(s)	1117, 2396, 2825
BmiI	GGNNCC	7 cut(s)	43, 250, 637, 777, 1119, 2667, 2826
BmrFI	CCNGG	4 cut(s)	26, 47, 482, 624
BmrI	ACTGGG	1 cut(s)	1578
BmuI	ACTGGG	1 cut(s)	1578
BpiI	GAAGAC	1 cut(s)	1839
BpmI	CTGGAG	4 cut(s)	1953, 2031, 2343, 2511
Bpu10I	CCTNAGC	2 cut(s)	338, 2661
Bpu1102I	GCTNAGC	1 cut(s)	1902
Bpu14I	TTCGAA	2 cut(s)	2303, 2630
BpuEI	CTTGAG	7 cut(s)	287, 704, 877, 966, 976, 2265, 2781
BpuMI	CCSGG	2 cut(s)	26, 624
Bsa29I	ATCGAT	1 cut(s)	672
BsaBI	GATNNNNATC	2 cut(s)	618, 762
BsaHI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BsaI	GGTCTC	1 cut(s)	2102
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 67, 508, 738, 2415, 2705
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	1573, 2024, 2081
Bse3DI	GCAATG	1 cut(s)	2126
Bse8I	GATNNNNATC	2 cut(s)	618, 762
BseBI	CCWGG	2 cut(s)	47, 482
BseCI	ATCGAT	1 cut(s)	672
BseGI	GGATG	4 cut(s)	210, 378, 502, 1414
BseJI	GATNNNNATC	2 cut(s)	618, 762
BseLI	CCNNNNNNNGG	6 cut(s)	24, 67, 508, 738, 2415, 2705
BseMI	GCAATG	1 cut(s)	2126
BseMII	CTCAG	7 cut(s)	352, 406, 1686, 1908, 1916, 2061, 2760
BseNI	ACTGG	3 cut(s)	1573, 2024, 2081
BseRI	GAGGAG	7 cut(s)	128, 134, 137, 287, 290, 485, 559
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	8 cut(s)	19, 964, 1759, 1762, 2038, 2501, 2504, 2644
BseYI	CCCAGC	1 cut(s)	1670
Bsh1236I	CGCG	2 cut(s)	35, 1261
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	8 cut(s)	24, 60, 240, 752, 2203, 2341, 2419, 2576
BshNI	GGYRCC	3 cut(s)	635, 775, 2665
BshTI	ACCGGT	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	3 cut(s)	33, 1903, 2234
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	5 cut(s)	25, 312, 623, 773, 2573
BslFI	GGGAC	1 cut(s)	2458
BslI	CCNNNNNNNGG	6 cut(s)	24, 67, 508, 738, 2415, 2705
BsmAI	GTCTC	3 cut(s)	170, 452, 2102
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	2458
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	8 cut(s)	24, 60, 240, 752, 2203, 2341, 2419, 2576
Bso31I	GGTCTC	1 cut(s)	2102
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	2 cut(s)	2303, 2630
Bsp1286I	GDGCHC	6 cut(s)	33, 44, 177, 1903, 2234, 2712
Bsp1407I	TGTACA	2 cut(s)	1158, 2497
Bsp1720I	GCTNAGC	1 cut(s)	1902
Bsp19I	CCATGG	1 cut(s)	2641
Bsp68I	TCGCGA	2 cut(s)	35, 1261
BspACI	CCGC	9 cut(s)	51, 116, 214, 423, 604, 1340, 2113, 2338, 2802
BspANI	GGCC	8 cut(s)	24, 60, 240, 752, 2203, 2341, 2419, 2576
BspCNI	CTCAG	7 cut(s)	351, 405, 1687, 1909, 1915, 2062, 2761
BspDI	ATCGAT	1 cut(s)	672
BspFNI	CGCG	2 cut(s)	35, 1261
BspHI	TCATGA	1 cut(s)	1641
BspLI	GGNNCC	7 cut(s)	43, 250, 637, 777, 1119, 2667, 2826
BspMAI	CTGCAG	3 cut(s)	1447, 1749, 2056
BspMI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
BspPI	GGATC	8 cut(s)	102, 396, 614, 1206, 1353, 2158, 2576, 2736
BspT104I	TTCGAA	2 cut(s)	2303, 2630
BspT107I	GGYRCC	3 cut(s)	635, 775, 2665
BspTI	CTTAAG	2 cut(s)	1994, 2162
BspTNI	GGTCTC	1 cut(s)	2102
BsrDI	GCAATG	1 cut(s)	2126
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	2 cut(s)	1158, 2497
BsrI	ACTGG	3 cut(s)	1573, 2024, 2081
BssAI	RCCGGY	1 cut(s)	311
BssNAI	GTATAC	1 cut(s)	855
BssNI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BssT1I	CCWWGG	7 cut(s)	66, 111, 507, 747, 1045, 2641, 2844
Bst1107I	GTATAC	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	47, 482
Bst4CI	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
Bst6I	CTCTTC	4 cut(s)	338, 998, 2386, 2408
BstACI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BstAFI	CTTAAG	2 cut(s)	1994, 2162
BstAPI	GCANNNNNTGC	2 cut(s)	933, 2657
BstAUI	TGTACA	2 cut(s)	1158, 2497
BstBI	TTCGAA	2 cut(s)	2303, 2630
BstDSI	CCRYGG	1 cut(s)	2641
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	210, 378, 502, 1414
BstFNI	CGCG	2 cut(s)	35, 1261
BstH2I	RGCGCY	4 cut(s)	542, 779, 1930, 2483
BstHHI	GCGC	9 cut(s)	129, 192, 309, 422, 541, 738, 778, 1929, 2482
BstMAI	GTCTC	3 cut(s)	170, 452, 2102
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	47, 482
BstNSI	RCATGY	1 cut(s)	1340
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	4 cut(s)	24, 45, 480, 622
BstSFI	CTRYAG	3 cut(s)	1443, 1745, 2052
BstUI	CGCG	2 cut(s)	35, 1261
BstV1I	GCAGC	8 cut(s)	19, 964, 1759, 1762, 2038, 2501, 2504, 2644
BstV2I	GAAGAC	1 cut(s)	1839
BstX2I	RGATCY	5 cut(s)	388, 1345, 1741, 2581, 2728
BstYI	RGATCY	5 cut(s)	388, 1345, 1741, 2581, 2728
BstZ17I	GTATAC	1 cut(s)	855
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	8 cut(s)	24, 60, 240, 752, 2203, 2341, 2419, 2576
BsuTUI	ATCGAT	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	2641
BtgZI	GCGATG	3 cut(s)	50, 1276, 2208
BtsCI	GGATG	4 cut(s)	210, 378, 502, 1414
BtsI	GCAGTG	2 cut(s)	1452, 2725
BtsIMutI	CAGTG	6 cut(s)	1452, 1566, 2088, 2384, 2710, 2725
BtuMI	TCGCGA	2 cut(s)	35, 1261
BveI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
CaiI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
CciI	TCATGA	1 cut(s)	1641
CfoI	GCGC	9 cut(s)	129, 192, 309, 422, 541, 738, 778, 1929, 2482
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	1117, 2396, 2825
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	4 cut(s)	616, 1829, 2430, 2890
Csp6I	GTAC	5 cut(s)	205, 1159, 2454, 2498, 2646
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	8 cut(s)	535, 631, 1216, 1318, 1337, 1642, 1973, 2642
CviQI	GTAC	5 cut(s)	205, 1159, 2454, 2498, 2646
DinI	GGCGCC	1 cut(s)	777
DraI	TTTAAA	1 cut(s)	2310
EaeI	YGGCCR	5 cut(s)	22, 58, 238, 2339, 2574
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	4 cut(s)	338, 998, 2386, 2408
EarI	CTCTTC	4 cut(s)	338, 998, 2386, 2408
EciI	GGCGGA	2 cut(s)	131, 203
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	7 cut(s)	66, 111, 507, 747, 1045, 2641, 2844
Eco147I	AGGCCT	1 cut(s)	752
Eco24I	GRGCYC	4 cut(s)	33, 44, 177, 2712
Eco31I	GGTCTC	1 cut(s)	2102
Eco32I	GATATC	2 cut(s)	181, 1945
Eco47I	GGWCC	3 cut(s)	1117, 2396, 2825
Eco47III	AGCGCT	1 cut(s)	1928
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	3 cut(s)	1484, 2448, 2526
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	1117, 2825
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	2 cut(s)	679, 2236
EcoRII	CCWGG	2 cut(s)	45, 480
EcoRV	GATATC	2 cut(s)	181, 1945
EcoT14I	CCWWGG	7 cut(s)	66, 111, 507, 747, 1045, 2641, 2844
EcoT38I	GRGCYC	4 cut(s)	33, 44, 177, 2712
EgeI	GGCGCC	1 cut(s)	777
EheI	GGCGCC	1 cut(s)	777
ErhI	CCWWGG	7 cut(s)	66, 111, 507, 747, 1045, 2641, 2844
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
FalI	AAGNNNNNCTT	4 cut(s)	2236, 2268, 2592, 2624
FaqI	GGGAC	1 cut(s)	2458
FatI	CATG	8 cut(s)	534, 630, 1215, 1317, 1336, 1641, 1972, 2641
FauI	CCCGC	3 cut(s)	1333, 2120, 2795
FauNDI	CATATG	2 cut(s)	1759, 2008
FbaI	TGATCA	2 cut(s)	357, 2611
FblI	GTMKAC	4 cut(s)	222, 489, 854, 1051
FokI	GGATG	4 cut(s)	197, 365, 489, 1421
FriOI	GRGCYC	4 cut(s)	33, 44, 177, 2712
FspBI	CTAG	5 cut(s)	809, 1094, 1349, 1889, 2556
GlaI	GCGC	9 cut(s)	128, 191, 308, 421, 540, 737, 777, 1928, 2481
GsaI	CCCAGC	1 cut(s)	1674
GsuI	CTGGAG	4 cut(s)	1953, 2031, 2343, 2511
HaeII	RGCGCY	4 cut(s)	542, 779, 1930, 2483
HaeIII	GGCC	8 cut(s)	24, 60, 240, 752, 2203, 2341, 2419, 2576
HapII	CCGG	5 cut(s)	25, 312, 623, 773, 2573
HgaI	GACGC	4 cut(s)	616, 1829, 2430, 2890
HhaI	GCGC	9 cut(s)	129, 192, 309, 422, 541, 738, 778, 1929, 2482
Hin1I	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
Hin1II	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
Hin6I	GCGC	9 cut(s)	127, 190, 307, 420, 539, 736, 776, 1927, 2480
HinP1I	GCGC	9 cut(s)	127, 190, 307, 420, 539, 736, 776, 1927, 2480
HincII	GTYRAC	3 cut(s)	373, 490, 1052
HindII	GTYRAC	3 cut(s)	373, 490, 1052
HindIII	AAGCTT	3 cut(s)	1481, 1977, 2372
HinfI	GANTC	9 cut(s)	280, 887, 1451, 1610, 2172, 2330, 2549, 2855, 2896
HpaII	CCGG	5 cut(s)	25, 312, 623, 773, 2573
HphI	GGTGA	5 cut(s)	536, 839, 1484, 1961, 2558
Hpy166II	GTNNAC	7 cut(s)	223, 373, 490, 855, 1052, 2519, 2638
Hpy8I	GTNNAC	7 cut(s)	223, 373, 490, 855, 1052, 2519, 2638
Hpy99I	CGWCG	9 cut(s)	165, 230, 248, 290, 347, 416, 458, 491, 2180
HpyAV	CCTTC	5 cut(s)	193, 262, 379, 520, 2594
HpyCH4III	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
HpyCH4IV	ACGT	3 cut(s)	163, 225, 1145
HpySE526I	ACGT	3 cut(s)	163, 225, 1145
Hsp92I	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
Hsp92II	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
HspAI	GCGC	9 cut(s)	127, 190, 307, 420, 539, 736, 776, 1927, 2480
KasI	GGCGCC	1 cut(s)	775
Ksp22I	TGATCA	2 cut(s)	357, 2611
LmnI	GCTCC	9 cut(s)	4, 28, 47, 124, 254, 1270, 1795, 2530, 2575
Lsp1109I	GCAGC	8 cut(s)	19, 964, 1759, 1762, 2038, 2501, 2504, 2644
MaeI	CTAG	5 cut(s)	809, 1094, 1349, 1889, 2556
MaeII	ACGT	3 cut(s)	163, 225, 1145
MaeIII	GTNAC	7 cut(s)	314, 1007, 1630, 2275, 2546, 2806, 2878
MflI	RGATCY	5 cut(s)	388, 1345, 1741, 2581, 2728
MhlI	GDGCHC	6 cut(s)	33, 44, 177, 1903, 2234, 2712
Mly113I	GGCGCC	1 cut(s)	776
MlyI	GAGTC	4 cut(s)	274, 1460, 2166, 2543
MroXI	GAANNNNTTC	2 cut(s)	1549, 2604
MspA1I	CMGCKG	3 cut(s)	1670, 2051, 2495
MspCI	CTTAAG	2 cut(s)	1994, 2162
MspI	CCGG	5 cut(s)	25, 312, 623, 773, 2573
MspR9I	CCNGG	4 cut(s)	26, 47, 482, 624
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	47, 482
MvnI	CGCG	2 cut(s)	35, 1261
NarI	GGCGCC	1 cut(s)	776
NciI	CCSGG	2 cut(s)	26, 624
NcoI	CCATGG	1 cut(s)	2641
NdeI	CATATG	2 cut(s)	1759, 2008
NlaIII	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
NlaIV	GGNNCC	7 cut(s)	43, 250, 637, 777, 1119, 2667, 2826
NmeAIII	GCCGAG	5 cut(s)	216, 757, 1105, 1417, 2253
NmuCI	GTSAC	4 cut(s)	1007, 2275, 2546, 2878
NruI	TCGCGA	2 cut(s)	35, 1261
NspI	RCATGY	1 cut(s)	1340
NspV	TTCGAA	2 cut(s)	2303, 2630
PaeR7I	CTCGAG	1 cut(s)	140
PagI	TCATGA	1 cut(s)	1641
PaqCI	CACCTGC	1 cut(s)	2642
PasI	CCCWGGG	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 225, 624, 2231
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	2 cut(s)	1549, 2604
PfeI	GAWTC	5 cut(s)	887, 1610, 2330, 2855, 2896
PflFI	GACNNNGTC	2 cut(s)	83, 1171
PinAI	ACCGGT	1 cut(s)	311
PleI	GAGTC	4 cut(s)	274, 1459, 2166, 2543
PluTI	GGCGCC	1 cut(s)	779
PpsI	GAGTC	4 cut(s)	274, 1459, 2166, 2543
PpuMI	RGGWCCY	2 cut(s)	1117, 2825
PshBI	ATTAAT	1 cut(s)	1227
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	1145
Psp5II	RGGWCCY	2 cut(s)	1117, 2825
Psp6I	CCWGG	2 cut(s)	45, 480
PspEI	GGTNACC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	1670
PspGI	CCWGG	2 cut(s)	45, 480
PspN4I	GGNNCC	7 cut(s)	43, 250, 637, 777, 1119, 2667, 2826
PspPI	GGNCC	3 cut(s)	1117, 2396, 2825
PspPPI	RGGWCCY	2 cut(s)	1117, 2825
PsrI	GAACNNNNNNTAC	2 cut(s)	2151, 2183
PstI	CTGCAG	3 cut(s)	1447, 1749, 2056
PstNI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
PsuI	RGATCY	5 cut(s)	388, 1345, 1741, 2581, 2728
PsyI	GACNNNGTC	2 cut(s)	83, 1171
PvuII	CAGCTG	3 cut(s)	1670, 2051, 2495
RruI	TCGCGA	2 cut(s)	35, 1261
RsaI	GTAC	5 cut(s)	206, 1160, 2455, 2499, 2647
RsaNI	GTAC	5 cut(s)	205, 1159, 2454, 2498, 2646
SacI	GAGCTC	1 cut(s)	33
SalI	GTCGAC	2 cut(s)	488, 1050
Sau96I	GGNCC	3 cut(s)	1117, 2396, 2825
SchI	GAGTC	4 cut(s)	274, 1460, 2166, 2543
ScrFI	CCNGG	4 cut(s)	26, 47, 482, 624
SduI	GDGCHC	6 cut(s)	33, 44, 177, 1903, 2234, 2712
SfcI	CTRYAG	3 cut(s)	1443, 1745, 2052
SfoI	GGCGCC	1 cut(s)	777
Sfr274I	CTCGAG	1 cut(s)	140
SfuI	TTCGAA	2 cut(s)	2303, 2630
SinI	GGWCC	3 cut(s)	1117, 2396, 2825
SlaI	CTCGAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	2555
SseBI	AGGCCT	1 cut(s)	752
SsiI	CCGC	9 cut(s)	51, 116, 214, 423, 604, 1340, 2113, 2338, 2802
SspDI	GGCGCC	1 cut(s)	775
SspI	AATATT	2 cut(s)	901, 1550
SspMI	CTAG	5 cut(s)	809, 1094, 1349, 1889, 2556
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	4 cut(s)	24, 45, 480, 622
StyI	CCWWGG	7 cut(s)	66, 111, 507, 747, 1045, 2641, 2844
TaaI	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
TaiI	ACGT	3 cut(s)	166, 228, 1148
TatI	WGTACW	3 cut(s)	204, 1158, 2497
TauI	GCSGC	4 cut(s)	54, 425, 607, 2341
TfiI	GAWTC	5 cut(s)	887, 1610, 2330, 2855, 2896
TscAI	CASTG	6 cut(s)	1452, 1573, 2088, 2391, 2710, 2725
TseFI	GTSAC	4 cut(s)	1007, 2275, 2546, 2878
TseI	GCWGC	8 cut(s)	7, 977, 1747, 1750, 2051, 2489, 2492, 2657
Tsp45I	GTSAC	4 cut(s)	1007, 2275, 2546, 2878
TspDTI	ATGAA	8 cut(s)	212, 1334, 1394, 1623, 1658, 1776, 1848, 1989
TspGWI	ACGGA	1 cut(s)	1603
TspRI	CASTG	6 cut(s)	1452, 1573, 2088, 2391, 2710, 2725
Tth111I	GACNNNGTC	2 cut(s)	83, 1171
Vha464I	CTTAAG	2 cut(s)	1994, 2162
VpaK11BI	GGWCC	3 cut(s)	1117, 2396, 2825
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	6 cut(s)	592, 679, 804, 2236, 2305, 2352
XceI	RCATGY	1 cut(s)	1340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1299
XhoI	CTCGAG	1 cut(s)	140
XmiI	GTMKAC	4 cut(s)	222, 489, 854, 1051
XmnI	GAANNNNTTC	2 cut(s)	1549, 2604
XspI	CTAG	5 cut(s)	809, 1094, 1349, 1889, 2556
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.