Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8288873.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 866

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8288873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 596 bp

tgtgcccgttgttcgatctcattaccatcgatgtgaatacgtataaggatttggtggttagctttgtgagcattctgaagcaagtcgcagagcgtaggttgcccaagacctatgactaccatcagcttccagcgccctttattcagattaggttgttgaagattttggcattgttggggagcggggataagcaatcgagtgagaagatgtatatggtagttggcgacatatttaagaagtgcgattccacgagtaatataggaaatgcagttctttatgagtgtatttgttgcgtttctgcaatacatcctaatccaaaattgttagaacaggctgctcaagtcatctcaagatttttgaagagtgacagtcataatttgaaatatatgggcattgatgctcttggtcgactgataaagatcagtccggagatagctgagcaacaccagttggctgtcattgattgcttagaggacccggatgatactttgaagcgaaaaacatttgaactgttatacaagatgacaaagtcctccaatgtggaggtgattgttgaccgtatgattgattacatgataagccttaatgataaccat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

198

Amino Acids

22.48

Weight (kDa)

6.23

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	408
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	159, 360, 381, 492, 508
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	62, 126, 436
AluI	AGCT	3 cut(s)	62, 126, 436
Aor13HI	TCCGGA	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	474
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	34, 128
BcnI	CCSGG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	323, 333
BpuMI	CCSGG	1 cut(s)	478
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	2 cut(s)	306, 486
BseJI	GATNNNNATC	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	427, 478
BsmI	GAATGC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	7
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	15, 419
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	429
BspDI	ATCGAT	1 cut(s)	29
BspEI	TCCGGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	15, 419
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	370, 512, 559
Bst6I	CTCTTC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	437, 468
BstF5I	GGATG	2 cut(s)	306, 486
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	18, 422
BstMBI	GATC	2 cut(s)	15, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 99, 132
BstSCI	CCNGG	1 cut(s)	476
BstSLI	GKGCMC	1 cut(s)	7
BstSNI	TACGTA	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	306, 486
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	474
ClaI	ATCGAT	1 cut(s)	29
CviAII	CATG	1 cut(s)	573
CviJI	RGCY	6 cut(s)	62, 126, 334, 436, 454, 581
CviKI_1	RGCY	6 cut(s)	62, 126, 334, 436, 454, 581
DdeI	CTNAG	2 cut(s)	437, 468
DpnI	GATC	2 cut(s)	17, 421
DpnII	GATC	2 cut(s)	15, 419
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco105I	TACGTA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	474
FaeI	CATG	1 cut(s)	576
FatI	CATG	1 cut(s)	572
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	293, 493
Fsp4HI	GCNGC	1 cut(s)	335
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	2 cut(s)	427, 478
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	576
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	2 cut(s)	409, 555
HindII	GTYRAC	2 cut(s)	409, 555
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	427, 478
HphI	GGTGA	1 cut(s)	558
Hpy166II	GTNNAC	2 cut(s)	409, 555
Hpy188I	TCNGA	2 cut(s)	77, 146
Hpy188III	TCNNGA	2 cut(s)	350, 427
Hpy8I	GTNNAC	2 cut(s)	409, 555
HpyCH4III	ACNGT	3 cut(s)	370, 512, 559
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	268, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 99, 132
HpyF3I	CTNAG	2 cut(s)	437, 468
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	576
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	15, 419
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	5 cut(s)	143, 316, 440, 460, 491
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	17, 421
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	2 cut(s)	15, 419
MboII	GAAGA	3 cut(s)	171, 216, 372
MhlI	GDGCHC	1 cut(s)	7
MluCI	AATT	2 cut(s)	319, 375
MnlI	CCTC	3 cut(s)	465, 537, 543
MroI	TCCGGA	1 cut(s)	426
MseI	TTAA	2 cut(s)	233, 584
MslI	CAYNNNNRTG	1 cut(s)	31
MspI	CCGG	2 cut(s)	427, 478
MspR9I	CCNGG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	68, 99, 132
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	2 cut(s)	15, 419
NlaIII	CATG	1 cut(s)	576
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	364
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	528
PkrI	GCNGC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	474
PspPPI	RGGWCCY	1 cut(s)	474
PsyI	GACNNNGTC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	233, 584
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	15, 419
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	7
SetI	ASST	8 cut(s)	43, 64, 100, 112, 128, 154, 438, 548
SfaNI	GCATC	1 cut(s)	387
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	338, 348
SmoI	CTYRAG	2 cut(s)	338, 348
SnaBI	TACGTA	1 cut(s)	41
Sse9I	AATT	2 cut(s)	319, 375
SsiI	CCGC	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	476
TaaI	ACNGT	3 cut(s)	370, 512, 559
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	14, 29, 196, 408
TasI	AATT	2 cut(s)	319, 375
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	233, 584
Tru9I	TTAA	2 cut(s)	233, 584
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.