Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

31671046 .. 31680785

Gene Structure 9740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGTTAGGCCACGACGCGTCGTTCGCCCACATCCATGCGGTGAAGATGACGCACGACGACAATCTCGTCTTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACTACCTCATCATTCTCATCGTCAACACCATCCAGAAGGACTTGAAGTCTGACAATTACCTCGTCGTTTGTACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACTGTTCCCGCCGTTTTTCCACAGGTTGTGGAGCTCCTAGGGCGCCAGAAGGAGGCTGTGAGGAAGAAGGCGATCATGGCGCTTCATCGGTTTTATCAGAAATCGCCGTCGTCGGTTTCGCATCTGGTGTCGAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTGATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCTATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCGAGTTGCAGAGCGTAGGTTGCCTAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGGTTAGGTTGTTGAAGATTTTGGCATTGTTTGGGAGCGGGAATAAGCAATCGAGTGAGAAGATGTATATGGTGGTTGGCGACATCTTTAAGAAGTTTCTTTATGAGTGTATTTGTTGCGTTTCTGCAATACATCCTAATCGGAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATCGATGCTCTTGGTCGACTGATGAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTTTGAAGCGAAAAACATTTGAACTGTTATACAAGATGACCAAGTCCTCCAATGTGGAGGTGATTGTCGACCGTATGATTGACTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGATGCGTGGAGCTTGCTGAGCAATTTGCTTCAAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAACATGCGGGAGATTTGGTGAATGTGAAGGTGGCACATAACTTGATGAAATTGATAGCCGAGGGATTTGGAGAGGATGACGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGATTCATATTTGCGCATCATCGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGGTACAGTCATTTGTTGGGTTTTGGGGGAATATGGAACCCCATAATGGAAAGTATTCTGCTTCATATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATCATGAAAATTTATGCATTTGAAATATCAGCTGGAAGAAAAGTGGATATGCTACCTGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCATGCTTATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTCTTTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCATATATTTCTGAGAATGAGCGCTCTGGAATGTTAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCAAAGACACTGGTGCCATCAAGAGTTCCTCCAGCTGCAATTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTGCATCATTGCCATCTGTGTCTGATGCAGGATCGTCAGAACTTAAATTACGACTTGATGGTGTTCAAAAGAAATGGGGTAGGCCTGCATACTCATCTTCTGCATCTTCGACATCAACTTCTAGTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGCAGTTGGCCAGTTCACTTTTTGGCGGTTCATCAAGAACCGAGAAGAGGACATCTTTGGGCAACCATAAAGTGTCCAAGGCCTCTGAGAAGTCACAGGTATCGAAGGCAGCAGGTGCACACACAGATGCTGCAGTGGAGAAAATAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTAGTATTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAGCCGAAGCTACATCAACTGTGAATAATGGTCCAGCAGGTGCTTCAAAAACACCTGAAATTATGGGATTATATGCAGACACTCCTGTCAGTGGGTTCAGCAGCAGTGTTGGGAACCCTGTGTTGACTAATAGGGATGACTTTGCATCTGAGTTATCAAATGATACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAAGGGTCCTAACCCTAAAGATTCATTTGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACCCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

887

Amino Acids

98.14

Weight (kDa)

5.98

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	2 - 520	5.9e-69	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2210, 2384
AasI	GACNNNNNNGTC	3 cut(s)	101, 1864, 2441
Acc16I	TGCGCA	1 cut(s)	1238
Acc36I	ACCTGC	3 cut(s)	2011, 2210, 2384
AccB1I	GGYRCC	2 cut(s)	306, 1777
AccB7I	CCANNNNNTGG	1 cut(s)	2338
AccBSI	CCGCTC	1 cut(s)	630
AccI	GTMKAC	3 cut(s)	27, 826, 972
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	2 cut(s)	402, 844
AciI	CCGC	9 cut(s)	19, 74, 228, 273, 409, 630, 1115, 1220, 2133
AclWI	GGATC	4 cut(s)	419, 1906, 2021, 2318
AcoI	YGGCCR	1 cut(s)	2115
AcsI	RAATTY	4 cut(s)	397, 1428, 2044, 2091
AcuI	CTGAAG	3 cut(s)	545, 1259, 2269
AcvI	CACGTG	1 cut(s)	2057
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	450
AfaI	GTAC	4 cut(s)	11, 226, 1281, 2038
AfeI	AGCGCT	1 cut(s)	1676
AfiI	CCNNNNNNNGG	5 cut(s)	316, 1322, 2154, 2338, 2447
AflIII	ACRYGT	1 cut(s)	51
AhdI	GACNNNNNGTC	1 cut(s)	199
AhlI	ACTAGT	1 cut(s)	2303
AjnI	CCWGG	1 cut(s)	427
Alw21I	GWGCWC	3 cut(s)	300, 1651, 2227
Alw26I	GTCTC	3 cut(s)	136, 257, 1850
Alw44I	GTGCAC	1 cut(s)	2223
AlwI	GGATC	4 cut(s)	419, 1906, 2021, 2318
AlwNI	CAGNNNCTG	2 cut(s)	1835, 2237
Aor13HI	TCCGGA	2 cut(s)	402, 844
Aor51HI	AGCGCT	1 cut(s)	1676
AoxI	GGCC	5 cut(s)	43, 1752, 1949, 2115, 2187
ApaLI	GTGCAC	1 cut(s)	2223
ApeKI	GCWGC	7 cut(s)	752, 1531, 1799, 2107, 2216, 2237, 2457
ApoI	RAATTY	4 cut(s)	397, 1428, 2044, 2091
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 73, 1247, 1279
Asp700I	GAANNNNTTC	3 cut(s)	1330, 1824, 2346
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	6 cut(s)	114, 309, 346, 583, 1239, 1677
AspS9I	GGNCC	3 cut(s)	892, 2387, 2561
AsuHPI	GGTGA	3 cut(s)	88, 976, 1138
AvaII	GGWCC	3 cut(s)	892, 2387, 2561
AvrII	CCTAGG	1 cut(s)	301
BaeGI	GKGCMC	2 cut(s)	455, 2227
BalI	TGGCCA	1 cut(s)	2117
BanI	GGYRCC	2 cut(s)	306, 1777
BanII	GRGCYC	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	2057
BbsI	GAAGAC	3 cut(s)	97, 1587, 1733
Bbv12I	GWGCWC	3 cut(s)	300, 1651, 2227
BbvI	GCAGC	7 cut(s)	739, 1543, 1786, 2119, 2224, 2228, 2469
BceAI	ACGGC	4 cut(s)	113, 224, 260, 355
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	2353
BcoDI	GTCTC	3 cut(s)	136, 257, 1850
BcuI	ACTAGT	1 cut(s)	2303
BfaI	CTAG	5 cut(s)	302, 1851, 1989, 2304, 2662
BfmI	CTRYAG	3 cut(s)	1194, 2238, 2319
BfoI	RGCGCY	4 cut(s)	310, 347, 584, 1678
BfuAI	ACCTGC	3 cut(s)	2011, 2210, 2384
BglII	AGATCT	1 cut(s)	1522
BisI	GCNGC	8 cut(s)	410, 753, 1532, 1800, 2108, 2217, 2238, 2458
BlnI	CCTAGG	1 cut(s)	301
BlpI	GCTNAGC	3 cut(s)	855, 1053, 1650
BlsI	GCNGC	8 cut(s)	411, 754, 1533, 1801, 2109, 2218, 2239, 2459
BmcAI	AGTACT	1 cut(s)	2038
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	3 cut(s)	892, 2387, 2561
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	892, 2387, 2561
BmiI	GGNNCC	7 cut(s)	308, 442, 894, 1314, 1779, 2471, 2562
BmrFI	CCNGG	1 cut(s)	429
BmrI	ACTGGG	1 cut(s)	1359
BmuI	ACTGGG	1 cut(s)	1359
BpiI	GAAGAC	3 cut(s)	97, 1587, 1733
BpmI	CTGGAG	5 cut(s)	450, 1511, 1779, 2082, 2253
Bpu1102I	GCTNAGC	3 cut(s)	855, 1053, 1650
BpuEI	CTTGAG	4 cut(s)	741, 751, 2092, 2517
Bsa29I	ATCGAT	2 cut(s)	813, 1593
BsaAI	YACGTR	2 cut(s)	489, 2057
BsaBI	GATNNNNATC	2 cut(s)	423, 836
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	301, 1167, 2184
BsaWI	WCCGGW	2 cut(s)	402, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	1110, 1140
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 1322, 2154, 2338, 2447
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	6 cut(s)	865, 1354, 1779, 1829, 1864, 2118
Bse3DI	GCAATG	1 cut(s)	1874
Bse8I	GATNNNNATC	2 cut(s)	423, 836
BseAI	TCCGGA	2 cut(s)	402, 844
BseBI	CCWGG	1 cut(s)	429
BseCI	ATCGAT	2 cut(s)	813, 1593
BseDI	CCNNGG	3 cut(s)	301, 1167, 2184
BseGI	GGATG	8 cut(s)	15, 66, 183, 724, 1189, 1808, 2497, 2596
BseJI	GATNNNNATC	2 cut(s)	423, 836
BseLI	CCNNNNNNNGG	5 cut(s)	316, 1322, 2154, 2338, 2447
BseMI	GCAATG	1 cut(s)	1874
BseMII	CTCAG	7 cut(s)	846, 1044, 1467, 1656, 1664, 2184, 2496
BseNI	ACTGG	6 cut(s)	865, 1354, 1779, 1829, 1864, 2118
BseSI	GKGCMC	2 cut(s)	455, 2227
BseXI	GCAGC	7 cut(s)	739, 1543, 1786, 2119, 2224, 2228, 2469
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	5 cut(s)	45, 1754, 1951, 2117, 2189
BshNI	GGYRCC	2 cut(s)	306, 1777
BshVI	ATCGAT	2 cut(s)	813, 1593
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	3 cut(s)	300, 1651, 2227
BsiSI	CCGG	3 cut(s)	117, 403, 845
BslI	CCNNNNNNNGG	5 cut(s)	316, 1322, 2154, 2338, 2447
BsmAI	GTCTC	3 cut(s)	136, 257, 1850
BsmBI	CGTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	5 cut(s)	45, 1754, 1951, 2117, 2189
Bsp1286I	GDGCHC	4 cut(s)	300, 455, 1651, 2227
Bsp13I	TCCGGA	2 cut(s)	402, 844
Bsp1720I	GCTNAGC	3 cut(s)	855, 1053, 1650
BspACI	CCGC	9 cut(s)	19, 74, 228, 273, 409, 630, 1115, 1220, 2133
BspANI	GGCC	5 cut(s)	45, 1754, 1951, 2117, 2189
BspCNI	CTCAG	7 cut(s)	847, 1045, 1468, 1657, 1663, 2185, 2497
BspDI	ATCGAT	2 cut(s)	813, 1593
BspEI	TCCGGA	2 cut(s)	402, 844
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	2 cut(s)	1422, 2257
BspLI	GGNNCC	7 cut(s)	308, 442, 894, 1314, 1779, 2471, 2562
BspMAI	CTGCAG	2 cut(s)	1198, 2242
BspMI	ACCTGC	3 cut(s)	2011, 2210, 2384
BspPI	GGATC	4 cut(s)	419, 1906, 2021, 2318
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	2 cut(s)	306, 1777
BsrBI	CCGCTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	1874
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	6 cut(s)	865, 1354, 1779, 1829, 1864, 2118
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	301, 1167, 2184
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	301, 2184
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	9 cut(s)	268, 788, 930, 977, 1284, 1396, 1739, 2299, 2377
Bst6I	CTCTTC	3 cut(s)	143, 773, 2147
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	2222
BstBAI	YACGTR	2 cut(s)	489, 2057
BstC8I	GCNNGC	4 cut(s)	248, 1050, 1536, 1953
BstDEI	CTNAG	9 cut(s)	552, 855, 886, 1053, 1476, 1650, 1665, 2193, 2505
BstF5I	GGATG	8 cut(s)	15, 66, 183, 724, 1189, 1808, 2497, 2596
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	4 cut(s)	310, 347, 584, 1678
BstHHI	GCGC	6 cut(s)	114, 309, 346, 583, 1239, 1677
BstMAI	GTCTC	3 cut(s)	136, 257, 1850
BstMCI	CGRYCG	1 cut(s)	976
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	2 cut(s)	1115, 1538
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	3 cut(s)	1194, 2238, 2319
BstSLI	GKGCMC	2 cut(s)	455, 2227
BstSNI	TACGTA	1 cut(s)	489
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	7 cut(s)	739, 1543, 1786, 2119, 2224, 2228, 2469
BstV2I	GAAGAC	3 cut(s)	97, 1587, 1733
BstX2I	RGATCY	2 cut(s)	1522, 2323
BstYI	RGATCY	2 cut(s)	1522, 2323
Bsu15I	ATCGAT	2 cut(s)	813, 1593
BsuRI	GGCC	5 cut(s)	45, 1754, 1951, 2117, 2189
BsuTUI	ATCGAT	2 cut(s)	813, 1593
BtsCI	GGATG	8 cut(s)	15, 66, 183, 724, 1189, 1808, 2497, 2596
BtsI	GCAGTG	2 cut(s)	2247, 2467
BtsIMutI	CAGTG	7 cut(s)	1347, 1772, 1836, 2247, 2293, 2452, 2467
BveI	ACCTGC	3 cut(s)	2011, 2210, 2384
Cac8I	GCNNGC	4 cut(s)	248, 1050, 1536, 1953
CaiI	CAGNNNCTG	2 cut(s)	1835, 2237
CciI	TCATGA	2 cut(s)	1422, 2257
CfoI	GCGC	6 cut(s)	114, 309, 346, 583, 1239, 1677
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	892, 2387, 2561
ClaI	ATCGAT	2 cut(s)	813, 1593
CseI	GACGC	3 cut(s)	42, 59, 94
Csp6I	GTAC	4 cut(s)	10, 225, 1280, 2037
CviAII	CATG	9 cut(s)	71, 340, 991, 1093, 1112, 1423, 1535, 1721, 2258
CviQI	GTAC	4 cut(s)	10, 225, 1280, 2037
DdeI	CTNAG	9 cut(s)	552, 855, 886, 1053, 1476, 1650, 1665, 2193, 2505
DinI	GGCGCC	1 cut(s)	308
DraIII	CACNNNGTG	1 cut(s)	450
DrdI	GACNNNNNNGTC	3 cut(s)	101, 1864, 2441
DriI	GACNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	3 cut(s)	101, 1864, 2441
EaeI	YGGCCR	1 cut(s)	2115
Eam1104I	CTCTTC	3 cut(s)	143, 773, 2147
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	3 cut(s)	143, 773, 2147
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	298
Eco105I	TACGTA	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	301, 2184
Eco147I	AGGCCT	3 cut(s)	1754, 1951, 2189
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	3 cut(s)	892, 2387, 2561
Eco47III	AGCGCT	1 cut(s)	1676
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	3 cut(s)	545, 1259, 2269
Eco72I	CACGTG	1 cut(s)	2057
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	892, 2561
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	301, 2184
EcoT22I	ATGCAT	1 cut(s)	1438
EcoT38I	GRGCYC	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	2 cut(s)	301, 2184
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	9 cut(s)	74, 343, 994, 1096, 1115, 1426, 1538, 1724, 2261
FalI	AAGNNNNNCTT	2 cut(s)	2334, 2366
FatI	CATG	9 cut(s)	70, 339, 990, 1092, 1111, 1422, 1534, 1720, 2257
FauI	CCCGC	3 cut(s)	280, 623, 1108
FbaI	TGATCA	1 cut(s)	2353
FblI	GTMKAC	3 cut(s)	27, 826, 972
Fnu4HI	GCNGC	8 cut(s)	410, 753, 1532, 1800, 2108, 2217, 2238, 2458
FokI	GGATG	8 cut(s)	2, 53, 170, 711, 1196, 1795, 2504, 2603
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	8 cut(s)	410, 753, 1532, 1800, 2108, 2217, 2238, 2458
FspBI	CTAG	5 cut(s)	302, 1851, 1989, 2304, 2662
FspI	TGCGCA	1 cut(s)	1238
GlaI	GCGC	6 cut(s)	113, 308, 345, 582, 1238, 1676
GluI	GCNGC	8 cut(s)	410, 753, 1532, 1800, 2108, 2217, 2238, 2458
GsuI	CTGGAG	5 cut(s)	450, 1511, 1779, 2082, 2253
HaeII	RGCGCY	4 cut(s)	310, 347, 584, 1678
HaeIII	GGCC	5 cut(s)	45, 1754, 1951, 2117, 2189
HapII	CCGG	3 cut(s)	117, 403, 845
HgaI	GACGC	3 cut(s)	42, 59, 94
HhaI	GCGC	6 cut(s)	114, 309, 346, 583, 1239, 1677
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	9 cut(s)	74, 343, 994, 1096, 1115, 1426, 1538, 1724, 2261
Hin6I	GCGC	6 cut(s)	112, 307, 344, 581, 1237, 1675
HinP1I	GCGC	6 cut(s)	112, 307, 344, 581, 1237, 1675
HincII	GTYRAC	4 cut(s)	178, 827, 973, 2481
HindII	GTYRAC	4 cut(s)	178, 827, 973, 2481
HindIII	AAGCTT	2 cut(s)	1256, 1725
HinfI	GANTC	3 cut(s)	1226, 2291, 2576
HpaII	CCGG	3 cut(s)	117, 403, 845
HphI	GGTGA	3 cut(s)	88, 976, 1138
Hpy166II	GTNNAC	7 cut(s)	28, 178, 827, 973, 2123, 2225, 2481
Hpy8I	GTNNAC	7 cut(s)	28, 178, 827, 973, 2123, 2225, 2481
Hpy99I	CGWCG	9 cut(s)	35, 53, 58, 95, 152, 221, 263, 376, 379
HpyAV	CCTTC	6 cut(s)	184, 307, 325, 1129, 2206, 2336
HpyCH4III	ACNGT	9 cut(s)	268, 788, 930, 977, 1284, 1396, 1739, 2299, 2377
HpyCH4IV	ACGT	3 cut(s)	30, 488, 2056
HpyF3I	CTNAG	9 cut(s)	552, 855, 886, 1053, 1476, 1650, 1665, 2193, 2505
HpySE526I	ACGT	3 cut(s)	30, 488, 2056
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	9 cut(s)	74, 343, 994, 1096, 1115, 1426, 1538, 1724, 2261
HspAI	GCGC	6 cut(s)	112, 307, 344, 581, 1237, 1675
KasI	GGCGCC	1 cut(s)	306
Kpn2I	TCCGGA	2 cut(s)	402, 844
Ksp22I	TGATCA	1 cut(s)	2353
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	6 cut(s)	295, 303, 440, 627, 1045, 2317
Lsp1109I	GCAGC	7 cut(s)	739, 1543, 1786, 2119, 2224, 2228, 2469
MaeI	CTAG	5 cut(s)	302, 1851, 1989, 2304, 2662
MaeII	ACGT	3 cut(s)	30, 488, 2056
MaeIII	GTNAC	6 cut(s)	782, 1411, 1733, 2199, 2299, 2614
MbiI	CCGCTC	1 cut(s)	630
MfeI	CAATTG	1 cut(s)	1803
MflI	RGATCY	2 cut(s)	1522, 2323
MhlI	GDGCHC	4 cut(s)	300, 455, 1651, 2227
MlsI	TGGCCA	1 cut(s)	2117
MluI	ACGCGT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	2117
Mly113I	GGCGCC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	1651, 2319
Mox20I	TGGCCA	1 cut(s)	2117
Mph1103I	ATGCAT	1 cut(s)	1438
MroI	TCCGGA	2 cut(s)	402, 844
MroXI	GAANNNNTTC	3 cut(s)	1330, 1824, 2346
MscI	TGGCCA	1 cut(s)	2117
MseI	TTAA	6 cut(s)	681, 1002, 1688, 1695, 1730, 1911
MslI	CAYNNNNRTG	5 cut(s)	69, 479, 1036, 1539, 2232
Msp20I	TGGCCA	1 cut(s)	2117
MspA1I	CMGCKG	2 cut(s)	1451, 1799
MspI	CCGG	3 cut(s)	117, 403, 845
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	1803
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	307
NlaIII	CATG	9 cut(s)	74, 343, 994, 1096, 1115, 1426, 1538, 1724, 2261
NlaIV	GGNNCC	7 cut(s)	308, 442, 894, 1314, 1779, 2471, 2562
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	3 cut(s)	782, 1733, 2199
NsbI	TGCGCA	1 cut(s)	1238
NsiI	ATGCAT	1 cut(s)	1438
NspI	RCATGY	2 cut(s)	1115, 1538
PaeI	GCATGC	1 cut(s)	1538
PagI	TCATGA	2 cut(s)	1422, 2257
PaqCI	CACCTGC	2 cut(s)	2210, 2384
PceI	AGGCCT	3 cut(s)	1754, 1951, 2189
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	3 cut(s)	30, 99, 452
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	3 cut(s)	1330, 1824, 2346
PfeI	GAWTC	3 cut(s)	1226, 2291, 2576
PflFI	GACNNNGTC	1 cut(s)	946
PflMI	CCANNNNNTGG	1 cut(s)	2338
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	411, 754, 1533, 1801, 2109, 2218, 2239, 2459
PluTI	GGCGCC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	2057
PmlI	CACGTG	1 cut(s)	2057
Ppu21I	YACGTR	2 cut(s)	489, 2057
PpuMI	RGGWCCY	2 cut(s)	892, 2561
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	2 cut(s)	892, 2561
Psp6I	CCWGG	1 cut(s)	427
PspCI	CACGTG	1 cut(s)	2057
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	7 cut(s)	308, 442, 894, 1314, 1779, 2471, 2562
PspPI	GGNCC	3 cut(s)	892, 2387, 2561
PspPPI	RGGWCCY	2 cut(s)	892, 2561
PsrI	GAACNNNNNNTAC	2 cut(s)	1899, 1931
PstI	CTGCAG	2 cut(s)	1198, 2242
PstNI	CAGNNNCTG	2 cut(s)	1835, 2237
PsuI	RGATCY	2 cut(s)	1522, 2323
PsyI	GACNNNGTC	1 cut(s)	946
PvuII	CAGCTG	2 cut(s)	1451, 1799
RsaI	GTAC	4 cut(s)	11, 226, 1281, 2038
RsaNI	GTAC	4 cut(s)	10, 225, 1280, 2037
RseI	CAYNNNNRTG	5 cut(s)	69, 479, 1036, 1539, 2232
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	2 cut(s)	825, 971
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	6 cut(s)	681, 1002, 1688, 1695, 1730, 1911
SatI	GCNGC	8 cut(s)	410, 753, 1532, 1800, 2108, 2217, 2238, 2458
Sau96I	GGNCC	3 cut(s)	892, 2387, 2561
ScaI	AGTACT	1 cut(s)	2038
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	4 cut(s)	300, 455, 1651, 2227
SfcI	CTRYAG	3 cut(s)	1194, 2238, 2319
SfoI	GGCGCC	1 cut(s)	308
SinI	GGWCC	3 cut(s)	892, 2387, 2561
SmiMI	CAYNNNNRTG	5 cut(s)	69, 479, 1036, 1539, 2232
SmlI	CTYRAG	4 cut(s)	756, 766, 2071, 2532
SmoI	CTYRAG	4 cut(s)	756, 766, 2071, 2532
SnaBI	TACGTA	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	2303
SphI	GCATGC	1 cut(s)	1538
SseBI	AGGCCT	3 cut(s)	1754, 1951, 2189
SsiI	CCGC	9 cut(s)	19, 74, 228, 273, 409, 630, 1115, 1220, 2133
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	5 cut(s)	302, 1851, 1989, 2304, 2662
SstI	GAGCTC	1 cut(s)	300
StuI	AGGCCT	3 cut(s)	1754, 1951, 2189
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	2 cut(s)	301, 2184
TaaI	ACNGT	9 cut(s)	268, 788, 930, 977, 1284, 1396, 1739, 2299, 2377
TaiI	ACGT	3 cut(s)	33, 491, 2059
TatI	WGTACW	2 cut(s)	9, 2036
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	1226, 2291, 2576
Tru1I	TTAA	6 cut(s)	681, 1002, 1688, 1695, 1730, 1911
Tru9I	TTAA	6 cut(s)	681, 1002, 1688, 1695, 1730, 1911
TscAI	CASTG	7 cut(s)	1354, 1779, 1836, 2247, 2293, 2452, 2467
TseFI	GTSAC	3 cut(s)	782, 1733, 2199
TseI	GCWGC	7 cut(s)	752, 1531, 1799, 2107, 2216, 2237, 2457
Tsp45I	GTSAC	3 cut(s)	782, 1733, 2199
TspGWI	ACGGA	2 cut(s)	1251, 2304
TspRI	CASTG	7 cut(s)	1354, 1779, 1836, 2247, 2293, 2452, 2467
Tth111I	GACNNNGTC	1 cut(s)	946
Van91I	CCANNNNNTGG	1 cut(s)	2338
VneI	GTGCAC	1 cut(s)	2223
VpaK11BI	GGWCC	3 cut(s)	892, 2387, 2561
XapI	RAATTY	4 cut(s)	397, 1428, 2044, 2091
XceI	RCATGY	2 cut(s)	1115, 1538
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	3 cut(s)	27, 826, 972
XmnI	GAANNNNTTC	3 cut(s)	1330, 1824, 2346
XspI	CTAG	5 cut(s)	302, 1851, 1989, 2304, 2662
ZrmI	AGTACT	1 cut(s)	2038
Zsp2I	ATGCAT	1 cut(s)	1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.