Prupe.2G055800_v2.0.a1

AP-4 complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
6652986 .. 6656382
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G055800.1

Sequence Viewer

Length: 1116 bp
ATGCCGTCAGATGCAAGTTGTGAAGACATTGAGATTGACAAAAGACTTTCATTCCTCAATGGCTATGTCCAGCAAGCACTAGAGAAAGGTGCTCAGCCCTATATTCCTGAGAATGAGCGCTCTGGAATGTTAAATATCAGCAACTTCAGTACCCAAGATCAGCATGAAGCTTTAACCCATGGTCTTAGGTTTGAGGCATATGAGCTTCCAAAGCCAGCAGTGCCATCCAGAATTCCTCCAGCTGCAGTTGCATCCTCAACCGAGCTTGTTCCAGTTCCTGAACCATCTTATGTTAGGGAGATCCGCCAGCCTGCATCATTGCCACCTGTTTCAGATGCAGGATCTTCGGAACTTAAGTTACGACTAGATGGTGTTCAAAGAAAATGGGGTAGGCCAACGTATTCCTCTCCAGCATTGTCAATCTCAAATTCCTCTAGTTCTAGTTCCCAGAAATCAGCGAATGGGGTCACACAAATAGATAGCGTGAGCACTTCAAATTCAAAAGCACGTGATACTTATGAGTCAAGGAGGCCTCAGGTTGAAATTTCTCCAGAAAAGCAGAAGCTTGCCAGTTCACTGTTTGGGGGATCATCAAAAACCGAGAGGAGGCCATCTTCTGCCAACCATAAGGTGTCTAAGGCGAATATCCATGCTTCAGAGAAGCCCCAGGTACCAAAGGCAGCAGCTGTACACACTGAAGTTAATCATGAACGTGCTCCAGACTTGCTCGATTTGGGTGACTCAACTAGTAGTACTGCTTCCACTGTAGATCCCTTCAAGCAGTTAGAAGGGCTTCTTGATCAAACTGAAGTTGCATTAACTGCAAATCATGGTGCAGCTGGTGCTGCTAAGACACCTGATATTATGGGATTATATACAGATACATCTCTCAGCGGGCTTAGTAGCAGTGTTGGCGACCCTTTGCCGACCAATAGGGATGAGTTTAATCTTGCATCTGAGTTATCAAATGCTACAAGAACTGCTCAAAGTGGGGTAACACAATTGAATAAGGGTCCTAACCCTAAAGATTCCTTGGAAAAGGATGCACTTGTAAGGCAGATGGGTGTGACCCCAACAAGTCAGAATCCCAACTTGTTTAAAGATTTGCTTGGCTAA

Protein Analysis

372

Amino Acids

39.67

Weight (kDa)

5.74

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 670
AccB1I GGYRCC 1 cut(s) 670
AciI CCGC 2 cut(s) 304, 894
AclWI GGATC 4 cut(s) 295, 349, 595, 764
AcsI RAATTY 4 cut(s) 231, 427, 496, 543
AcuI CTGAAG 4 cut(s) 130, 639, 717, 828
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 151, 672, 690, 754
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 606
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 6 cut(s) 377, 495, 501, 542, 778, 1006
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 666
AluBI AGCT 7 cut(s) 170, 205, 242, 265, 565, 686, 839
AluI AGCT 7 cut(s) 170, 205, 242, 265, 565, 686, 839
Alw21I GWGCWC 3 cut(s) 94, 491, 718
AlwI GGATC 4 cut(s) 295, 349, 595, 764
AlwNI CAGNNNCTG 2 cut(s) 278, 686
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 3 cut(s) 392, 530, 608
ApeKI GCWGC 5 cut(s) 242, 680, 683, 836, 845
ApoI RAATTY 4 cut(s) 231, 427, 496, 543
Asp700I GAANNNNTTC 1 cut(s) 792
Asp718I GGTACC 1 cut(s) 670
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 1013
AsuHPI GGTGA 1 cut(s) 749
AvaII GGWCC 1 cut(s) 1013
AxyI CCTNAGG 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BanI GGYRCC 1 cut(s) 670
BarI GAAGNNNNNNTAC 2 cut(s) 742, 774
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 3 cut(s) 94, 491, 718
BbvI GCAGC 5 cut(s) 229, 692, 695, 832, 848
BccI CCATC 5 cut(s) 232, 292, 362, 619, 1054
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 799
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 5 cut(s) 80, 365, 435, 441, 747
BfmI CTRYAG 2 cut(s) 243, 765
BfoI RGCGCY 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 353
BisI GCNGC 5 cut(s) 243, 681, 684, 837, 846
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 5 cut(s) 244, 682, 685, 838, 847
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 1 cut(s) 668
Bme18I GGWCC 1 cut(s) 1013
BmgT120I GGNCC 1 cut(s) 1013
BmiI GGNNCC 2 cut(s) 672, 1014
BmrFI CCNGG 1 cut(s) 668
BmsI GCATC 5 cut(s) 260, 323, 325, 962, 1033
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 4 cut(s) 222, 393, 534, 702
Bpu1102I GCTNAGC 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 178, 666, 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse1I ACTGG 2 cut(s) 272, 570
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 3 cut(s) 178, 666, 1032
BseGI GGATG 4 cut(s) 224, 251, 943, 1048
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 5 cut(s) 99, 107, 548, 904, 948
BseNI ACTGG 2 cut(s) 272, 570
BseRI GAGGAG 1 cut(s) 619
BseXI GCAGC 5 cut(s) 229, 692, 695, 832, 848
BsgI GTGCAG 1 cut(s) 855
BshFI GGCC 3 cut(s) 394, 532, 610
BshNI GGYRCC 1 cut(s) 670
BsiHKAI GWGCWC 3 cut(s) 94, 491, 718
BslI CCNNNNNNNGG 1 cut(s) 606
BsnI GGCC 3 cut(s) 394, 532, 610
Bsp1286I GDGCHC 3 cut(s) 94, 491, 718
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 6 cut(s) 157, 300, 341, 587, 769, 799
Bsp1720I GCTNAGC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 2 cut(s) 304, 894
BspANI GGCC 3 cut(s) 394, 532, 610
BspCNI CTCAG 5 cut(s) 100, 106, 547, 903, 949
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 2 cut(s) 672, 1014
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 4 cut(s) 295, 349, 595, 764
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 2 cut(s) 272, 570
BssECI CCNNGG 3 cut(s) 178, 666, 1032
BssMI GATC 6 cut(s) 157, 300, 341, 587, 769, 799
BssT1I CCWWGG 2 cut(s) 178, 1032
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 2 cut(s) 579, 766
BstAFI CTTAAG 1 cut(s) 353
BstAPI GCANNNNNTGC 2 cut(s) 821, 842
BstAUI TGTACA 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 6 cut(s) 75, 216, 308, 312, 567, 896
BstDEI CTNAG 9 cut(s) 93, 108, 185, 534, 636, 849, 890, 899, 957
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 4 cut(s) 224, 251, 943, 1048
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 6 cut(s) 160, 303, 344, 590, 772, 802
BstMBI GATC 6 cut(s) 157, 300, 341, 587, 769, 799
BstMWI GCNNNNNNNGC 7 cut(s) 211, 220, 248, 821, 842, 845, 912
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstSFI CTRYAG 2 cut(s) 243, 765
BstV1I GCAGC 5 cut(s) 229, 692, 695, 832, 848
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 3 cut(s) 300, 341, 769
BstYI RGATCY 3 cut(s) 300, 341, 769
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 394, 532, 610
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 224, 251, 943, 1048
BtsI GCAGTG 2 cut(s) 225, 913
BtsIMutI CAGTG 5 cut(s) 225, 575, 693, 762, 913
Cac8I GCNNGC 6 cut(s) 75, 216, 308, 312, 567, 896
CaiI CAGNNNCTG 2 cut(s) 278, 686
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 1013
Csp6I GTAC 4 cut(s) 150, 671, 689, 753
CviAII CATG 5 cut(s) 164, 179, 650, 707, 830
CviQI GTAC 4 cut(s) 150, 671, 689, 753
DdeI CTNAG 9 cut(s) 93, 108, 185, 534, 636, 849, 890, 899, 957
DpnI GATC 6 cut(s) 159, 302, 343, 589, 771, 801
DpnII GATC 6 cut(s) 157, 300, 341, 587, 769, 799
DraI TTTAAA 1 cut(s) 1099
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 178, 1032
Eco147I AGGCCT 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 1013
Eco47III AGCGCT 1 cut(s) 119
Eco57I CTGAAG 4 cut(s) 130, 639, 717, 828
Eco72I CACGTG 1 cut(s) 509
Eco81I CCTNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 2 cut(s) 178, 1032
ErhI CCWWGG 2 cut(s) 178, 1032
FaeI CATG 5 cut(s) 167, 182, 653, 710, 833
FalI AAGNNNNNCTT 3 cut(s) 780, 812, 1092
FatI CATG 5 cut(s) 163, 178, 649, 706, 829
FauI CCCGC 1 cut(s) 887
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 5 cut(s) 243, 681, 684, 837, 846
FokI GGATG 4 cut(s) 211, 238, 950, 1055
Fsp4HI GCNGC 5 cut(s) 243, 681, 684, 837, 846
FspBI CTAG 5 cut(s) 80, 365, 435, 441, 747
GlaI GCGC 1 cut(s) 119
GluI GCNGC 5 cut(s) 243, 681, 684, 837, 846
GsuI CTGGAG 4 cut(s) 222, 393, 534, 702
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 3 cut(s) 394, 532, 610
HhaI GCGC 1 cut(s) 120
Hin1II CATG 5 cut(s) 167, 182, 653, 710, 833
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 168, 563
HinfI GANTC 4 cut(s) 521, 740, 1028, 1084
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 2 cut(s) 575, 691
Hpy188I TCNGA 6 cut(s) 10, 334, 349, 658, 958, 1083
Hpy188III TCNNGA 8 cut(s) 107, 123, 228, 278, 551, 707, 719, 797
Hpy8I GTNNAC 2 cut(s) 575, 691
HpyAV CCTTC 2 cut(s) 782, 784
HpyCH4III ACNGT 2 cut(s) 579, 766
HpyCH4IV ACGT 3 cut(s) 398, 508, 712
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 220, 248, 821, 842, 845, 912
HpyF3I CTNAG 9 cut(s) 93, 108, 185, 534, 636, 849, 890, 899, 957
HpySE526I ACGT 3 cut(s) 398, 508, 712
Hsp92II CATG 5 cut(s) 167, 182, 653, 710, 833
HspAI GCGC 1 cut(s) 118
KpnI GGTACC 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 6 cut(s) 157, 300, 341, 587, 769, 799
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 5 cut(s) 229, 692, 695, 832, 848
LweI GCATC 5 cut(s) 260, 323, 325, 962, 1033
MaeI CTAG 5 cut(s) 80, 365, 435, 441, 747
MaeII ACGT 3 cut(s) 398, 508, 712
MaeIII GTNAC 5 cut(s) 357, 466, 737, 994, 1066
MalI GATC 6 cut(s) 159, 302, 343, 589, 771, 801
MboI GATC 6 cut(s) 157, 300, 341, 587, 769, 799
MboII GAAGA 3 cut(s) 35, 336, 606
MfeI CAATTG 1 cut(s) 1001
MflI RGATCY 3 cut(s) 300, 341, 769
MhlI GDGCHC 3 cut(s) 94, 491, 718
MluCI AATT 5 cut(s) 231, 427, 496, 543, 1001
MlyI GAGTC 2 cut(s) 530, 734
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 7 cut(s) 131, 173, 354, 702, 818, 945, 1098
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 4 cut(s) 242, 686, 839, 894
MspCI CTTAAG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 668
MunI CAATTG 1 cut(s) 1001
MvaI CCWGG 1 cut(s) 668
MwoI GCNNNNNNNGC 7 cut(s) 211, 220, 248, 821, 842, 845, 912
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 199
NdeII GATC 6 cut(s) 157, 300, 341, 587, 769, 799
NlaIII CATG 5 cut(s) 167, 182, 653, 710, 833
NlaIV GGNNCC 2 cut(s) 672, 1014
NmuCI GTSAC 3 cut(s) 466, 737, 1066
PagI TCATGA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 1028, 1084
PkrI GCNGC 5 cut(s) 244, 682, 685, 838, 847
PleI GAGTC 2 cut(s) 529, 734
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 2 cut(s) 529, 734
Ppu21I YACGTR 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 1013
Psp5II RGGWCCY 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 666
PspCI CACGTG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 2 cut(s) 672, 1014
PspPI GGNCC 1 cut(s) 1013
PspPPI RGGWCCY 1 cut(s) 1013
PsrI GAACNNNNNNTAC 2 cut(s) 342, 374
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 2 cut(s) 278, 686
PsuI RGATCY 3 cut(s) 300, 341, 769
PvuII CAGCTG 3 cut(s) 242, 686, 839
RsaI GTAC 4 cut(s) 151, 672, 690, 754
RsaNI GTAC 4 cut(s) 150, 671, 689, 753
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 7 cut(s) 131, 173, 354, 702, 818, 945, 1098
SatI GCNGC 5 cut(s) 243, 681, 684, 837, 846
Sau3AI GATC 6 cut(s) 157, 300, 341, 587, 769, 799
Sau96I GGNCC 1 cut(s) 1013
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 2 cut(s) 530, 734
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 3 cut(s) 94, 491, 718
SfaNI GCATC 5 cut(s) 260, 323, 325, 962, 1033
SfcI CTRYAG 2 cut(s) 243, 765
SinI GGWCC 1 cut(s) 1013
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 5 cut(s) 231, 427, 496, 543, 1001
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 2 cut(s) 304, 894
SspMI CTAG 5 cut(s) 80, 365, 435, 441, 747
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 2 cut(s) 178, 1032
TaaI ACNGT 2 cut(s) 579, 766
TaiI ACGT 3 cut(s) 401, 511, 715
TaqI TCGA 1 cut(s) 729
TasI AATT 5 cut(s) 231, 427, 496, 543, 1001
TatI WGTACW 2 cut(s) 688, 752
TfiI GAWTC 2 cut(s) 1028, 1084
Tru1I TTAA 7 cut(s) 131, 173, 354, 702, 818, 945, 1098
Tru9I TTAA 7 cut(s) 131, 173, 354, 702, 818, 945, 1098
TscAI CASTG 5 cut(s) 225, 582, 700, 769, 913
TseFI GTSAC 3 cut(s) 466, 737, 1066
TseI GCWGC 5 cut(s) 242, 680, 683, 836, 845
Tsp45I GTSAC 3 cut(s) 466, 737, 1066
TspDTI ATGAA 3 cut(s) 39, 180, 723
TspRI CASTG 5 cut(s) 225, 582, 700, 769, 913
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 1013
XapI RAATTY 4 cut(s) 231, 427, 496, 543
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 5 cut(s) 80, 365, 435, 441, 747
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.