Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

33001443 .. 33011646

Gene Structure 10204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG292400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2913 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCCATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAGCGCATCGTCCTCCACGAGATCGAAACCCTAAAACGACGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGCCACGACGCGTCGTTCGCTTACATCCACGCCGTGAAGATGACGCACGACGACAATCTCGTCCTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACGACCTCATCATTCTCATCGTCAACACCATCCAGAAGGACCTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACCGTGCCCGCCGTTTTGCCCCAGGTCGTGGAGCTCCTAGGGCACCAGAAGGAGGCGGTGAGGAAGAAGGCGATCATGGCTCTTCATCGGTTTTATCAGAAGTCGCCGTCGTCGGTTTCGCATCTGGTGTCCAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTCATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCAAGTCGCAGAGCGTAGGTTGCCCAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGATTAGGTTGTTGAAGATTTTGGCATTGTTGGGGAGCGGGGATAAGCAATCGAGTGAGAAGATGTATATGGTAGTTGGCGACATATTTAAGAAGTGCGATTCCACAAGTAATATAGGAAATGCAGTTCTTTATGAGTGTATTTGTTGCGTTTCTGCAATACATCCTAATCCAAAATTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATTGATGCTCTTGGTCGACTGATAAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCGGATGATACTTTGAAGCGAAAAACATTTGAACTGTTATACAAGATGACAAAGTCCTCCAATGTGGAGGTGATTGTTGACCGTATGATTGATTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGATGTGTGGAGCTTGCTGAGCAATTTGCTCCGAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTCGAACATGCGGGAGATTTGGTGAATGTTAAGGTGGCACATAACTTGATGAAATTGATCGCCGAGGGATTTGGAGAGGATGACGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGGTCATTTGTTGGGTTTTGGGGGAATATGGAACTGCTGATGGAAAGTATTCTGCTTCATATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATAATGAAAATATATGCATTTGAAATATCAGCTGGAAGAAAAGTGGATATGCTACCTGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCGTGCCTATGAATTGCAAGCTGTCATTGGCATAAATGCTCATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTTATTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCCTATATTTCTGAGAATGAGCGCTCTGGAATGTCAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCAAAGCCACTGGTGCCATCAAGAGTTCCTCCGGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTGCATCATTGCCATCTGTGTCAGATGCAGGATCTTCAGAACTTAAATTACGACTTGACGGTGTTCAAAAGAAATGGGGTAGGCCGACATACTCATCTTCGACCTCAACTTCTAGTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGTCATCAGTTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTTTTTGGCGGTTCATCAAGAACCGAGAAGAGGCCATCTTCGGGCAACCATAAAGTGTCCAAGGCCACCGAGAAGTCGCAGGTATCGAAGGCAGCAGGTGCACACACTGACGCTGCAGTGGAGAAAACAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTGGTACTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAACCGAAGCTACATCAACTGTGAATAATGGTCCAGCAGGTGCTTCAAAAACACCTGAAATTATGGGATTATATGCTGATACTCCTGTCAGTGGGCTCAGTAGCAGTGTTGGCAACCCTGTGTTGACCAATAGGGATGACTTTAATCTTGCATCTGAGTTATCAAATGCTACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAAGGGTCCTAACCCTAAAGATTCATTGGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACGCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

970

Amino Acids

106.85

Weight (kDa)

5.76

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 593	1.6e-84	Adaptin N terminal region
Cnd1	PF12717	140 - 299	5.4e-06	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2453, 2627
AasI	GACNNNNNNGTC	2 cut(s)	296, 2116
Acc16I	TGCGCA	1 cut(s)	1463
Acc36I	ACCTGC	4 cut(s)	2254, 2437, 2453, 2627
AccB1I	GGYRCC	2 cut(s)	501, 2029
AccB7I	CCANNNNNTGG	2 cut(s)	487, 2581
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	222, 1051
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	2 cut(s)	597, 1069
AclWI	GGATC	5 cut(s)	102, 614, 2158, 2264, 2561
AcoI	YGGCCR	4 cut(s)	22, 58, 238, 2358
AcsI	RAATTY	2 cut(s)	2287, 2334
AcuI	CTGAAG	5 cut(s)	413, 740, 1484, 2139, 2512
AcvI	CACGTG	1 cut(s)	2300
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	2 cut(s)	271, 645
AfaI	GTAC	3 cut(s)	206, 2281, 2551
AfeI	AGCGCT	1 cut(s)	1928
AfiI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2397, 2408, 2581, 2690
AflIII	ACRYGT	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	480, 622
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
Alw21I	GWGCWC	4 cut(s)	33, 495, 1903, 2470
Alw26I	GTCTC	3 cut(s)	331, 452, 2102
Alw44I	GTGCAC	1 cut(s)	2466
AlwI	GGATC	5 cut(s)	102, 614, 2158, 2264, 2561
AlwNI	CAGNNNCTG	1 cut(s)	2087
Aor13HI	TCCGGA	2 cut(s)	597, 1069
Aor51HI	AGCGCT	1 cut(s)	1928
AoxI	GGCC	9 cut(s)	22, 58, 114, 238, 2004, 2201, 2358, 2399, 2430
ApaLI	GTGCAC	1 cut(s)	2466
ApeKI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2459, 2480
ApoI	RAATTY	2 cut(s)	2287, 2334
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1472, 1504
Asp700I	GAANNNNTTC	3 cut(s)	1549, 2076, 2589
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
AspS9I	GGNCC	4 cut(s)	388, 1117, 2630, 2810
AsuC2I	CCSGG	2 cut(s)	26, 1121
AsuHPI	GGTGA	3 cut(s)	529, 1201, 1363
AsuII	TTCGAA	1 cut(s)	1332
AvaII	GGWCC	4 cut(s)	388, 1117, 2630, 2810
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	4 cut(s)	468, 504, 650, 2470
BaeI	ACNNNNGTAYC	2 cut(s)	2670, 2703
BalI	TGGCCA	1 cut(s)	2360
BanI	GGYRCC	2 cut(s)	501, 2029
BanII	GRGCYC	4 cut(s)	33, 44, 495, 2697
BauI	CACGAG	1 cut(s)	140
BbrPI	CACGTG	1 cut(s)	2300
BbsI	GAAGAC	3 cut(s)	1321, 1839, 1985
Bbv12I	GWGCWC	4 cut(s)	33, 495, 1903, 2470
BbvI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2467, 2471
BceAI	ACGGC	5 cut(s)	254, 308, 419, 455, 550
BciT130I	CCWGG	2 cut(s)	482, 624
BclI	TGATCA	1 cut(s)	2596
BcnI	CCSGG	2 cut(s)	26, 1121
BcoDI	GTCTC	3 cut(s)	331, 452, 2102
BfaI	CTAG	4 cut(s)	497, 2103, 2232, 2911
BfmI	CTRYAG	4 cut(s)	1419, 2052, 2481, 2562
BfoI	RGCGCY	2 cut(s)	779, 1930
BfuAI	ACCTGC	4 cut(s)	2254, 2437, 2453, 2627
BglII	AGATCT	1 cut(s)	1741
BisI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2460, 2481
BlnI	CCTAGG	1 cut(s)	496
BlpI	GCTNAGC	3 cut(s)	1080, 1278, 1902
BlsI	GCNGC	8 cut(s)	9, 53, 606, 979, 1752, 2053, 2461, 2482
BmcAI	AGTACT	1 cut(s)	2281
Bme1390I	CCNGG	4 cut(s)	26, 482, 624, 1121
Bme18I	GGWCC	4 cut(s)	388, 1117, 2630, 2810
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	4 cut(s)	388, 1117, 2630, 2810
BmiI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2811
BmrFI	CCNGG	4 cut(s)	26, 482, 624, 1121
BmrI	ACTGGG	1 cut(s)	1578
BmuI	ACTGGG	1 cut(s)	1578
BpiI	GAAGAC	3 cut(s)	1321, 1839, 1985
BpmI	CTGGAG	4 cut(s)	645, 1730, 2325, 2496
Bpu1102I	GCTNAGC	3 cut(s)	1080, 1278, 1902
Bpu14I	TTCGAA	1 cut(s)	1332
BpuEI	CTTGAG	5 cut(s)	287, 966, 976, 2335, 2766
BpuMI	CCSGG	2 cut(s)	26, 1121
Bsa29I	ATCGAT	2 cut(s)	672, 1845
BsaAI	YACGTR	2 cut(s)	684, 2300
BsaBI	GATNNNNATC	2 cut(s)	618, 1061
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2427
BsaWI	WCCGGW	2 cut(s)	597, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	1335, 1365
Bsc4I	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2397, 2408, 2581, 2690
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2361, 2551
Bse3DI	GCAATG	1 cut(s)	2126
Bse8I	GATNNNNATC	2 cut(s)	618, 1061
BseAI	TCCGGA	2 cut(s)	597, 1069
BseBI	CCWGG	2 cut(s)	482, 624
BseCI	ATCGAT	2 cut(s)	672, 1845
BseDI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2427
BseJI	GATNNNNATC	2 cut(s)	618, 1061
BseLI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2397, 2408, 2581, 2690
BseMI	GCAATG	1 cut(s)	2126
BseMII	CTCAG	7 cut(s)	1071, 1269, 1686, 1908, 1916, 2710, 2745
BseNI	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2361, 2551
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	4 cut(s)	468, 504, 650, 2470
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2467, 2471
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2360, 2401, 2432
BshNI	GGYRCC	2 cut(s)	501, 2029
BshVI	ATCGAT	2 cut(s)	672, 1845
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	4 cut(s)	33, 495, 1903, 2470
BsiSI	CCGG	6 cut(s)	25, 312, 598, 1070, 1121, 2048
BslI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2397, 2408, 2581, 2690
BsmAI	GTCTC	3 cut(s)	331, 452, 2102
BsmBI	CGTCTC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2360, 2401, 2432
Bso31I	GGTCTC	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	1332
Bsp1286I	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2470, 2697
Bsp13I	TCCGGA	2 cut(s)	597, 1069
Bsp1720I	GCTNAGC	3 cut(s)	1080, 1278, 1902
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2360, 2401, 2432
BspCNI	CTCAG	7 cut(s)	1072, 1270, 1687, 1909, 1915, 2709, 2746
BspDI	ATCGAT	2 cut(s)	672, 1845
BspEI	TCCGGA	2 cut(s)	597, 1069
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	2500
BspLI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2811
BspMAI	CTGCAG	3 cut(s)	1423, 2056, 2485
BspMI	ACCTGC	4 cut(s)	2254, 2437, 2453, 2627
BspPI	GGATC	5 cut(s)	102, 614, 2158, 2264, 2561
BspQI	GCTCTTC	2 cut(s)	338, 546
BspT104I	TTCGAA	1 cut(s)	1332
BspT107I	GGYRCC	2 cut(s)	501, 2029
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	2126
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2361, 2551
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2427
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2427
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	482, 624
Bst4CI	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2542, 2620
Bst6I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2390
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	2465
BstBAI	YACGTR	2 cut(s)	684, 2300
BstBI	TTCGAA	1 cut(s)	1332
BstC8I	GCNNGC	6 cut(s)	33, 443, 468, 1275, 1755, 1770
BstDEI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2696, 2754
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	779, 1930
BstHHI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
BstMAI	GTCTC	3 cut(s)	331, 452, 2102
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	482, 624
BstNSI	RCATGY	1 cut(s)	1340
BstSCI	CCNGG	4 cut(s)	24, 480, 622, 1119
BstSFI	CTRYAG	4 cut(s)	1419, 2052, 2481, 2562
BstSLI	GKGCMC	4 cut(s)	468, 504, 650, 2470
BstSNI	TACGTA	1 cut(s)	684
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2467, 2471
BstV2I	GAAGAC	3 cut(s)	1321, 1839, 1985
BstX2I	RGATCY	3 cut(s)	1741, 2150, 2566
BstYI	RGATCY	3 cut(s)	1741, 2150, 2566
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	2 cut(s)	672, 1845
BsuRI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2360, 2401, 2432
BsuTUI	ATCGAT	2 cut(s)	672, 1845
BtgI	CCRYGG	1 cut(s)	36
BtsI	GCAGTG	2 cut(s)	2490, 2710
BtsIMutI	CAGTG	8 cut(s)	1566, 2024, 2088, 2472, 2490, 2536, 2695, 2710
BveI	ACCTGC	4 cut(s)	2254, 2437, 2453, 2627
Cac8I	GCNNGC	6 cut(s)	33, 443, 468, 1275, 1755, 1770
CaiI	CAGNNNCTG	1 cut(s)	2087
CciI	TCATGA	1 cut(s)	2500
CfoI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	4 cut(s)	388, 1117, 2630, 2810
ClaI	ATCGAT	2 cut(s)	672, 1845
CseI	GACGC	5 cut(s)	171, 237, 254, 289, 2486
Csp6I	GTAC	3 cut(s)	205, 2280, 2550
CviAII	CATG	9 cut(s)	37, 535, 631, 1216, 1318, 1337, 1793, 1973, 2501
CviQI	GTAC	3 cut(s)	205, 2280, 2550
DdeI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2696, 2754
DraIII	CACNNNGTG	2 cut(s)	271, 645
DrdI	GACNNNNNNGTC	2 cut(s)	296, 2116
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	2 cut(s)	296, 2116
EaeI	YGGCCR	4 cut(s)	22, 58, 238, 2358
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2390
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	5 cut(s)	114, 338, 546, 998, 2390
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	2 cut(s)	31, 493
EclXI	CGGCCG	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2427
Eco147I	AGGCCT	1 cut(s)	2006
Eco24I	GRGCYC	4 cut(s)	33, 44, 495, 2697
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	4 cut(s)	388, 1117, 2630, 2810
Eco47III	AGCGCT	1 cut(s)	1928
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	31, 493
Eco57I	CTGAAG	5 cut(s)	413, 740, 1484, 2139, 2512
Eco72I	CACGTG	1 cut(s)	2300
EcoICRI	GAGCTC	2 cut(s)	31, 493
EcoO109I	RGGNCCY	3 cut(s)	388, 1117, 2810
EcoRII	CCWGG	2 cut(s)	480, 622
EcoT14I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2427
EcoT22I	ATGCAT	1 cut(s)	1657
EcoT38I	GRGCYC	4 cut(s)	33, 44, 495, 2697
ErhI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2427
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	9 cut(s)	40, 538, 634, 1219, 1321, 1340, 1796, 1976, 2504
FalI	AAGNNNNNCTT	2 cut(s)	2577, 2609
FatI	CATG	9 cut(s)	36, 534, 630, 1215, 1317, 1336, 1792, 1972, 2500
FauI	CCCGC	3 cut(s)	475, 818, 1333
FbaI	TGATCA	1 cut(s)	2596
FblI	GTMKAC	2 cut(s)	222, 1051
Fnu4HI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2460, 2481
FriOI	GRGCYC	4 cut(s)	33, 44, 495, 2697
Fsp4HI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2460, 2481
FspBI	CTAG	4 cut(s)	497, 2103, 2232, 2911
FspI	TGCGCA	1 cut(s)	1463
GlaI	GCGC	6 cut(s)	128, 191, 308, 777, 1463, 1928
GluI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2460, 2481
GsuI	CTGGAG	4 cut(s)	645, 1730, 2325, 2496
HaeII	RGCGCY	2 cut(s)	779, 1930
HaeIII	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2360, 2401, 2432
HapII	CCGG	6 cut(s)	25, 312, 598, 1070, 1121, 2048
HgaI	GACGC	5 cut(s)	171, 237, 254, 289, 2486
HhaI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	9 cut(s)	40, 538, 634, 1219, 1321, 1340, 1796, 1976, 2504
Hin6I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HinP1I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HincII	GTYRAC	4 cut(s)	373, 1052, 1198, 2724
HindII	GTYRAC	4 cut(s)	373, 1052, 1198, 2724
HindIII	AAGCTT	2 cut(s)	1481, 1977
HinfI	GANTC	5 cut(s)	627, 887, 1451, 2534, 2825
HpaII	CCGG	6 cut(s)	25, 312, 598, 1070, 1121, 2048
HphI	GGTGA	3 cut(s)	529, 1201, 1363
Hpy166II	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2366, 2468, 2724
Hpy8I	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2366, 2468, 2724
HpyAV	CCTTC	6 cut(s)	193, 379, 502, 520, 2449, 2579
HpyCH4III	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2542, 2620
HpyCH4IV	ACGT	3 cut(s)	225, 683, 2299
HpyF3I	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2696, 2754
HpySE526I	ACGT	3 cut(s)	225, 683, 2299
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	9 cut(s)	40, 538, 634, 1219, 1321, 1340, 1796, 1976, 2504
HspAI	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
Kpn2I	TCCGGA	2 cut(s)	597, 1069
Ksp22I	TGATCA	1 cut(s)	2596
LguI	GCTCTTC	2 cut(s)	338, 546
Lsp1109I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2467, 2471
MaeI	CTAG	4 cut(s)	497, 2103, 2232, 2911
MaeII	ACGT	3 cut(s)	225, 683, 2299
MaeIII	GTNAC	5 cut(s)	1007, 1630, 1985, 2542, 2863
MbiI	CCGCTC	1 cut(s)	825
MflI	RGATCY	3 cut(s)	1741, 2150, 2566
MhlI	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2470, 2697
MlsI	TGGCCA	1 cut(s)	2360
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	2360
MlyI	GAGTC	2 cut(s)	636, 1460
MmeI	TCCRAC	2 cut(s)	1903, 2562
Mox20I	TGGCCA	1 cut(s)	2360
Mph1103I	ATGCAT	1 cut(s)	1657
MroI	TCCGGA	2 cut(s)	597, 1069
MroXI	GAANNNNTTC	3 cut(s)	1549, 2076, 2589
MscI	TGGCCA	1 cut(s)	2360
MseI	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2742
MslI	CAYNNNNRTG	2 cut(s)	674, 1261
Msp20I	TGGCCA	1 cut(s)	2360
MspA1I	CMGCKG	1 cut(s)	1670
MspI	CCGG	6 cut(s)	25, 312, 598, 1070, 1121, 2048
MspR9I	CCNGG	4 cut(s)	26, 482, 624, 1121
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	482, 624
MvnI	CGCG	1 cut(s)	248
NciI	CCSGG	2 cut(s)	26, 1121
NcoI	CCATGG	1 cut(s)	36
NlaIII	CATG	9 cut(s)	40, 538, 634, 1219, 1321, 1340, 1796, 1976, 2504
NlaIV	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2811
NmeAIII	GCCGAG	2 cut(s)	216, 1417
NmuCI	GTSAC	2 cut(s)	1007, 1985
NsbI	TGCGCA	1 cut(s)	1463
NsiI	ATGCAT	1 cut(s)	1657
NspI	RCATGY	1 cut(s)	1340
NspV	TTCGAA	1 cut(s)	1332
PagI	TCATGA	1 cut(s)	2500
PaqCI	CACCTGC	2 cut(s)	2453, 2627
PceI	AGGCCT	1 cut(s)	2006
PciSI	GCTCTTC	2 cut(s)	338, 546
PcsI	WCGNNNNNNNCGW	7 cut(s)	138, 225, 294, 348, 459, 647, 2450
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	1549, 2076, 2589
PfeI	GAWTC	3 cut(s)	887, 2534, 2825
PflFI	GACNNNGTC	2 cut(s)	83, 1171
PflMI	CCANNNNNTGG	2 cut(s)	487, 2581
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	8 cut(s)	9, 53, 606, 979, 1752, 2053, 2461, 2482
PleI	GAGTC	2 cut(s)	635, 1459
PmaCI	CACGTG	1 cut(s)	2300
PmlI	CACGTG	1 cut(s)	2300
PpsI	GAGTC	2 cut(s)	635, 1459
Ppu21I	YACGTR	2 cut(s)	684, 2300
PpuMI	RGGWCCY	3 cut(s)	388, 1117, 2810
Psp124BI	GAGCTC	2 cut(s)	33, 495
Psp5II	RGGWCCY	3 cut(s)	388, 1117, 2810
Psp6I	CCWGG	2 cut(s)	480, 622
PspCI	CACGTG	1 cut(s)	2300
PspGI	CCWGG	2 cut(s)	480, 622
PspN4I	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2811
PspPI	GGNCC	4 cut(s)	388, 1117, 2630, 2810
PspPPI	RGGWCCY	3 cut(s)	388, 1117, 2810
PsrI	GAACNNNNNNTAC	2 cut(s)	2151, 2183
PstI	CTGCAG	3 cut(s)	1423, 2056, 2485
PstNI	CAGNNNCTG	1 cut(s)	2087
PsuI	RGATCY	3 cut(s)	1741, 2150, 2566
PsyI	GACNNNGTC	2 cut(s)	83, 1171
PvuII	CAGCTG	1 cut(s)	1670
RsaI	GTAC	3 cut(s)	206, 2281, 2551
RsaNI	GTAC	3 cut(s)	205, 2280, 2550
RseI	CAYNNNNRTG	2 cut(s)	674, 1261
SacI	GAGCTC	2 cut(s)	33, 495
SalI	GTCGAC	1 cut(s)	1050
SapI	GCTCTTC	2 cut(s)	338, 546
SaqAI	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2742
SatI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2460, 2481
Sau96I	GGNCC	4 cut(s)	388, 1117, 2630, 2810
ScaI	AGTACT	1 cut(s)	2281
SchI	GAGTC	2 cut(s)	636, 1460
ScrFI	CCNGG	4 cut(s)	26, 482, 624, 1121
SduI	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2470, 2697
SfcI	CTRYAG	4 cut(s)	1419, 2052, 2481, 2562
SfuI	TTCGAA	1 cut(s)	1332
SinI	GGWCC	4 cut(s)	388, 1117, 2630, 2810
SmiMI	CAYNNNNRTG	2 cut(s)	674, 1261
SmlI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2314, 2781
SmoI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2314, 2781
SnaBI	TACGTA	1 cut(s)	684
SseBI	AGGCCT	1 cut(s)	2006
SspMI	CTAG	4 cut(s)	497, 2103, 2232, 2911
SstI	GAGCTC	2 cut(s)	33, 495
StuI	AGGCCT	1 cut(s)	2006
StyD4I	CCNGG	4 cut(s)	24, 480, 622, 1119
StyI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2427
TaaI	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2542, 2620
TaiI	ACGT	3 cut(s)	228, 686, 2302
TatI	WGTACW	2 cut(s)	204, 2279
TauI	GCSGC	2 cut(s)	54, 607
TfiI	GAWTC	3 cut(s)	887, 2534, 2825
Tru1I	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2742
Tru9I	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2742
TscAI	CASTG	8 cut(s)	1573, 2031, 2088, 2479, 2490, 2536, 2695, 2710
TseFI	GTSAC	2 cut(s)	1007, 1985
TseI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2459, 2480
Tsp45I	GTSAC	2 cut(s)	1007, 1985
TspGWI	ACGGA	2 cut(s)	1476, 2547
TspRI	CASTG	8 cut(s)	1573, 2031, 2088, 2479, 2490, 2536, 2695, 2710
Tth111I	GACNNNGTC	2 cut(s)	83, 1171
Van91I	CCANNNNNTGG	2 cut(s)	487, 2581
VneI	GTGCAC	1 cut(s)	2466
VpaK11BI	GGWCC	4 cut(s)	388, 1117, 2630, 2810
XapI	RAATTY	2 cut(s)	2287, 2334
XceI	RCATGY	1 cut(s)	1340
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	222, 1051
XmnI	GAANNNNTTC	3 cut(s)	1549, 2076, 2589
XspI	CTAG	4 cut(s)	497, 2103, 2232, 2911
ZrmI	AGTACT	1 cut(s)	2281
Zsp2I	ATGCAT	1 cut(s)	1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.