Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

38835600 .. 38836298

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCAAAGCCACTGGTGCCATCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTGCATCTTTGCCATCTGTGTCAGATGCAGGATCTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTTTTTGGTTCATCAAGAACCGAGAAGAGGCCATCTTCGGGCAACCATAAAGTGTCCAAGGCAGCCGAGAATTCGCAGGTATCGAAGGCAGCAGGTGTACACACTGATGCTGCAGTGGAGAAAACAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTTGTTCAACTGTTACTAGTACTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATGAAACTGAAGCTCACATCAACTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

202

Amino Acids

21.65

Weight (kDa)

5.61

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	434
AasI	GACNNNNNNGTC	1 cut(s)	181
Acc36I	ACCTGC	3 cut(s)	238, 418, 434
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	562
AclWI	GGATC	3 cut(s)	223, 248, 542
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	3 cut(s)	271, 318, 421
AcuI	CTGAAG	2 cut(s)	493, 606
AcvI	CACGTG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	265, 450, 532
AfiI	CCNNNNNNNGG	3 cut(s)	378, 389, 562
AgsI	TTSAA	4 cut(s)	270, 276, 317, 519
AhlI	ACTAGT	1 cut(s)	527
AluBI	AGCT	4 cut(s)	44, 79, 116, 590
AluI	AGCT	4 cut(s)	44, 79, 116, 590
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	223, 248, 542
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	69, 342, 380
ApeKI	GCWGC	4 cut(s)	116, 413, 440, 461
ApoI	RAATTY	3 cut(s)	271, 318, 421
Asp700I	GAANNNNTTC	2 cut(s)	141, 570
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	103, 425, 448, 452
BccI	CCATC	6 cut(s)	106, 166, 205, 248, 316, 391
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	168, 528
BfmI	CTRYAG	3 cut(s)	117, 462, 543
BfuAI	ACCTGC	3 cut(s)	238, 418, 434
BisI	GCNGC	4 cut(s)	117, 414, 441, 462
BlsI	GCNGC	4 cut(s)	118, 415, 442, 463
BmcAI	AGTACT	2 cut(s)	265, 532
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	4 cut(s)	134, 197, 199, 448
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	3 cut(s)	96, 309, 477
BpuEI	CTTGAG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 389, 562
Bse1I	ACTGG	4 cut(s)	96, 146, 181, 345
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	378, 389, 562
BseNI	ACTGG	4 cut(s)	96, 146, 181, 345
BseXI	GCAGC	4 cut(s)	103, 425, 448, 452
BshFI	GGCC	3 cut(s)	71, 344, 382
BshNI	GGYRCC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	378, 389, 562
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	71, 344, 382
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	31, 215, 240, 547
BspANI	GGCC	3 cut(s)	71, 344, 382
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	2 cut(s)	121, 466
BspMI	ACCTGC	3 cut(s)	238, 418, 434
BspPI	GGATC	3 cut(s)	223, 248, 542
BspT107I	GGYRCC	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	4 cut(s)	96, 146, 181, 345
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	31, 215, 240, 547
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	56, 523, 602
Bst6I	CTCTTC	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	34, 218, 243, 550
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	31, 215, 240, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 94, 122
BstSFI	CTRYAG	3 cut(s)	117, 462, 543
BstV1I	GCAGC	4 cut(s)	103, 425, 448, 452
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	215, 547
BstYI	RGATCY	2 cut(s)	215, 547
BsuRI	GGCC	3 cut(s)	71, 344, 382
BtsCI	GGATG	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	4 cut(s)	89, 153, 453, 471
BveI	ACCTGC	3 cut(s)	238, 418, 434
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	264, 449, 531
CviAII	CATG	2 cut(s)	38, 482
CviQI	GTAC	3 cut(s)	264, 449, 531
DpnI	GATC	4 cut(s)	33, 217, 242, 549
DpnII	GATC	4 cut(s)	31, 215, 240, 547
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	493, 606
Eco72I	CACGTG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	41, 485
FaiI	YATR	7 cut(s)	39, 75, 165, 294, 399, 483, 545
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	2 cut(s)	37, 481
Fnu4HI	GCNGC	4 cut(s)	117, 414, 441, 462
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	117, 414, 441, 462
FspBI	CTAG	2 cut(s)	168, 528
GluI	GCNGC	4 cut(s)	117, 414, 441, 462
GsuI	CTGGAG	3 cut(s)	96, 309, 477
HaeIII	GGCC	3 cut(s)	71, 344, 382
Hin1II	CATG	2 cut(s)	41, 485
HindIII	AAGCTT	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	350, 449, 451
Hpy188I	TCNGA	2 cut(s)	23, 208
Hpy188III	TCNNGA	6 cut(s)	102, 326, 366, 482, 494, 575
Hpy8I	GTNNAC	3 cut(s)	350, 449, 451
HpyAV	CCTTC	2 cut(s)	430, 560
HpyCH4III	ACNGT	3 cut(s)	56, 523, 602
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	119, 125, 188, 212, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 94, 122
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	41, 485
Kzo9I	GATC	4 cut(s)	31, 215, 240, 547
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	4 cut(s)	103, 425, 448, 452
LweI	GCATC	4 cut(s)	134, 197, 199, 448
MaeI	CTAG	2 cut(s)	168, 528
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	50, 523
MalI	GATC	4 cut(s)	33, 217, 242, 549
MboI	GATC	4 cut(s)	31, 215, 240, 547
MboII	GAAGA	4 cut(s)	50, 210, 378, 388
MflI	RGATCY	2 cut(s)	215, 547
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	4 cut(s)	16, 271, 318, 421
MluNI	TGGCCA	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	5 cut(s)	61, 120, 139, 294, 372
Mox20I	TGGCCA	1 cut(s)	344
MroXI	GAANNNNTTC	2 cut(s)	141, 570
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	2 cut(s)	12, 47
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	85, 94, 122
NdeII	GATC	4 cut(s)	31, 215, 240, 547
NlaIII	CATG	2 cut(s)	41, 485
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PdmI	GAANNNNTTC	2 cut(s)	141, 570
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	118, 415, 442, 463
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	96
PstI	CTGCAG	2 cut(s)	121, 466
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	215, 547
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	3 cut(s)	265, 450, 532
RsaNI	GTAC	3 cut(s)	264, 449, 531
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	12, 47
SatI	GCNGC	4 cut(s)	117, 414, 441, 462
Sau3AI	GATC	4 cut(s)	31, 215, 240, 547
ScaI	AGTACT	2 cut(s)	265, 532
SetI	ASST	9 cut(s)	46, 81, 118, 252, 286, 432, 448, 490, 592
SfaNI	GCATC	4 cut(s)	134, 197, 199, 448
SfcI	CTRYAG	3 cut(s)	117, 462, 543
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	4 cut(s)	16, 271, 318, 421
SseBI	AGGCCT	1 cut(s)	71
SspMI	CTAG	2 cut(s)	168, 528
StuI	AGGCCT	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	56, 523, 602
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	434
TasI	AATT	4 cut(s)	16, 271, 318, 421
TatI	WGTACW	3 cut(s)	263, 448, 530
Tru1I	TTAA	2 cut(s)	12, 47
Tru9I	TTAA	2 cut(s)	12, 47
TscAI	CASTG	4 cut(s)	96, 153, 460, 471
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	4 cut(s)	116, 413, 440, 461
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	54, 351, 498, 594
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	4 cut(s)	96, 153, 460, 471
Van91I	CCANNNNNTGG	1 cut(s)	562
XapI	RAATTY	3 cut(s)	271, 318, 421
XmnI	GAANNNNTTC	2 cut(s)	141, 570
XspI	CTAG	2 cut(s)	168, 528
ZrmI	AGTACT	2 cut(s)	265, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.