Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

33905277 .. 33916282

Gene Structure 11006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG317900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCCATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAACGCATCGTCCTCCACGAGATCGAAACCCTAAAACGCCGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGTTAGGCCACGACGCGTCGTTCGCCTACATCCATGCGGTGAAGATGACGCACGACGACAATCTCGTCTTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACTACCTCATCATTCTCATCGTCAACACCATCCAGAAGGACTTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACTGTTCCCGCCGTTTTTCCACAGGTTGTGGAGCTCCTAGGGCACCAGAAGGAGGCTGTGAGGAAGAAGGCGATCATGGCGCTTCATCGGTTTTATCAGAAATCGCCGTCGTCGGTTTCGCATCTGGTGTCGAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTGATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCGAGTTGCAGAGCGTAGGTTGCCTAAGACCTATGACTACCATCAGCTTCCAGGCCCTTTATTCAGGTTAGTTCTTTATGAGTGTATTTGTTGCGTTTCTGCAATACATCCTAATCTGAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATCGATATTCTTGGTCGACTGATGAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTTTGAAGCGAAAAACATTTGAACTGTTATACAAGATGACCAAGTCCTCCAATGTGGAGGTGATTGTCGACCGTATGATTGACTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGATGCGTGGAGCTTGCTGAGCAATTTGCTCCAAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAACATGCGGGAGATTTGGTGAATGTGAAGGTGGCACATAACTTGATGAAATTGATAGCCGAGGGATTTGGAGAGGATGACGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGATTCATATTTGCGCATCATCGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGGTACAGTCATTTGTTGGGTTTTGGGGGAATATGGAACCCCATAATGGAAAGTATTCTGCTTCATATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATCATGAAAATTTATGCATTTGAAATATCAGCTGGAAGAAAAGTGGATATGCTACCTGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCATGCTTATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTCTTTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCATATATTTCTGAGAATGAGCGCTCTGGAATTTTAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGTCTATGAGCTTCCAAAGCCACTGGTGCCATCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTACCTGAACCATCTTATGCTAGGGAGGCACACCAGTCTGCATCATTGCCATCTGTGTCTGATGGAGGATCGTCAGAACTTAAATTACGACTTGATGGTGTTCAAAAGAAATGGGGTAGGCCTGCATACTCATCTTCTGCATCTTCAACATCAACTTCTAGTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGCAGTTGGCCAGTTCACTTTTTGGCTGTTCATCAAGAACCGAGAAGAGGACATCTTCGGGCAACCATAAAGTGTCCAAGGCCTCTGAGAAGTCACAGGTATCGAAGGCAGCAGGTGCACACACAGATGCTGCAGTGGAGAAAATAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTAGTACTGCTCCGTCAATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAGCCGAAGCTACATCAACTGTGAATAATGGTCCAGCAGGTGCTTCAAAAACACCTGAAATTATGGGATTATTTGCAGACACTCCTGTCAGTGGGTTCAGCAGCAGTGTTGGGAACCCTGTGTTGACTAATAGGGATGACTTTGCATCTGAGTTATCAAATGATACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAAGGGTCCTAACCCTAAAGATTCATTTGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACCCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

922

Amino Acids

102.02

Weight (kDa)

5.78

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 244	9.4e-37	Adaptin N terminal region
Adaptin_N	PF01602	265 - 555	2.2e-28	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2315, 2489
AasI	GACNNNNNNGTC	2 cut(s)	296, 2546
Acc16I	TGCGCA	1 cut(s)	1343
Acc36I	ACCTGC	3 cut(s)	2116, 2315, 2489
AccB1I	GGYRCC	2 cut(s)	501, 1882
AccB7I	CCANNNNNTGG	1 cut(s)	2443
AccI	GTMKAC	3 cut(s)	222, 931, 1077
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	2 cut(s)	597, 949
AciI	CCGC	9 cut(s)	51, 163, 214, 269, 423, 468, 604, 1220, 1325
AclWI	GGATC	5 cut(s)	102, 614, 2011, 2126, 2423
AcoI	YGGCCR	3 cut(s)	22, 58, 2220
AcsI	RAATTY	5 cut(s)	592, 1533, 1788, 2149, 2196
AcuI	CTGAAG	4 cut(s)	740, 860, 1364, 2374
AcvI	CACGTG	1 cut(s)	2162
AdeI	CACNNNGTG	1 cut(s)	645
AfaI	GTAC	5 cut(s)	206, 1386, 1938, 2143, 2413
AfeI	AGCGCT	1 cut(s)	1781
AfiI	CCNNNNNNNGG	7 cut(s)	24, 67, 511, 1427, 2259, 2443, 2552
AflIII	ACRYGT	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	2408
AjnI	CCWGG	2 cut(s)	622, 772
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
Alw21I	GWGCWC	4 cut(s)	33, 495, 1756, 2332
Alw26I	GTCTC	2 cut(s)	331, 452
Alw44I	GTGCAC	1 cut(s)	2328
AlwI	GGATC	5 cut(s)	102, 614, 2011, 2126, 2423
AlwNI	CAGNNNCTG	2 cut(s)	1940, 2342
Aor13HI	TCCGGA	2 cut(s)	597, 949
Aor51HI	AGCGCT	1 cut(s)	1781
AoxI	GGCC	8 cut(s)	22, 58, 114, 238, 775, 2054, 2220, 2292
ApaLI	GTGCAC	1 cut(s)	2328
ApeKI	GCWGC	8 cut(s)	7, 857, 1636, 1904, 2212, 2321, 2342, 2562
ApoI	RAATTY	5 cut(s)	592, 1533, 1788, 2149, 2196
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1352, 1384
Asp700I	GAANNNNTTC	3 cut(s)	1435, 1929, 2451
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	5 cut(s)	192, 309, 541, 1344, 1782
AspS9I	GGNCC	4 cut(s)	776, 997, 2492, 2666
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	283, 1081, 1243
AvaII	GGWCC	3 cut(s)	997, 2492, 2666
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	3 cut(s)	504, 650, 2332
BalI	TGGCCA	1 cut(s)	2222
BanI	GGYRCC	2 cut(s)	501, 1882
BanII	GRGCYC	3 cut(s)	33, 44, 495
BauI	CACGAG	1 cut(s)	140
BbrPI	CACGTG	1 cut(s)	2162
BbsI	GAAGAC	3 cut(s)	292, 1692, 1838
Bbv12I	GWGCWC	4 cut(s)	33, 495, 1756, 2332
BbvI	GCAGC	8 cut(s)	19, 844, 1648, 1891, 2224, 2329, 2333, 2574
BceAI	ACGGC	4 cut(s)	308, 419, 455, 550
BciT130I	CCWGG	2 cut(s)	624, 774
BclI	TGATCA	1 cut(s)	2458
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	331, 452
BcuI	ACTAGT	1 cut(s)	2408
BfaI	CTAG	5 cut(s)	497, 1956, 2094, 2409, 2767
BfmI	CTRYAG	3 cut(s)	1299, 1905, 2343
BfoI	RGCGCY	2 cut(s)	542, 1783
BfuAI	ACCTGC	3 cut(s)	2116, 2315, 2489
BglII	AGATCT	1 cut(s)	1627
BlnI	CCTAGG	1 cut(s)	496
BlpI	GCTNAGC	3 cut(s)	960, 1158, 1755
BmcAI	AGTACT	2 cut(s)	2143, 2413
Bme1390I	CCNGG	3 cut(s)	26, 624, 774
Bme18I	GGWCC	3 cut(s)	997, 2492, 2666
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	4 cut(s)	776, 997, 2492, 2666
BmiI	GGNNCC	8 cut(s)	43, 503, 637, 999, 1419, 1884, 2576, 2667
BmrFI	CCNGG	3 cut(s)	26, 624, 774
BmrI	ACTGGG	1 cut(s)	1464
BmuI	ACTGGG	1 cut(s)	1464
BpiI	GAAGAC	3 cut(s)	292, 1692, 1838
BpmI	CTGGAG	5 cut(s)	645, 1616, 1884, 2187, 2358
Bpu1102I	GCTNAGC	3 cut(s)	960, 1158, 1755
BpuEI	CTTGAG	4 cut(s)	846, 856, 2197, 2622
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	3 cut(s)	672, 918, 1698
BsaAI	YACGTR	2 cut(s)	684, 2162
BsaBI	GATNNNNATC	2 cut(s)	618, 941
BsaJI	CCNNGG	7 cut(s)	36, 46, 66, 111, 496, 1272, 2289
BsaWI	WCCGGW	2 cut(s)	597, 949
BsaXI	ACNNNNNCTCC	2 cut(s)	1215, 1245
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 67, 511, 1427, 2259, 2443, 2552
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	6 cut(s)	970, 1459, 1884, 1934, 1969, 2223
Bse3DI	GCAATG	1 cut(s)	1979
Bse8I	GATNNNNATC	2 cut(s)	618, 941
BseAI	TCCGGA	2 cut(s)	597, 949
BseBI	CCWGG	2 cut(s)	624, 774
BseCI	ATCGAT	3 cut(s)	672, 918, 1698
BseDI	CCNNGG	7 cut(s)	36, 46, 66, 111, 496, 1272, 2289
BseGI	GGATG	9 cut(s)	180, 210, 261, 378, 829, 1294, 1913, 2602, 2701
BseJI	GATNNNNATC	2 cut(s)	618, 941
BseLI	CCNNNNNNNGG	7 cut(s)	24, 67, 511, 1427, 2259, 2443, 2552
BseMI	GCAATG	1 cut(s)	1979
BseMII	CTCAG	7 cut(s)	951, 1149, 1572, 1761, 1769, 2289, 2601
BseNI	ACTGG	6 cut(s)	970, 1459, 1884, 1934, 1969, 2223
BseSI	GKGCMC	3 cut(s)	504, 650, 2332
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	8 cut(s)	19, 844, 1648, 1891, 2224, 2329, 2333, 2574
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	2 cut(s)	25, 1081
BshFI	GGCC	8 cut(s)	24, 60, 116, 240, 777, 2056, 2222, 2294
BshNI	GGYRCC	2 cut(s)	501, 1882
BshVI	ATCGAT	3 cut(s)	672, 918, 1698
BsiEI	CGRYCG	2 cut(s)	25, 1081
BsiHKAI	GWGCWC	4 cut(s)	33, 495, 1756, 2332
BsiSI	CCGG	4 cut(s)	25, 312, 598, 950
BslI	CCNNNNNNNGG	7 cut(s)	24, 67, 511, 1427, 2259, 2443, 2552
BsmAI	GTCTC	2 cut(s)	331, 452
BsmBI	CGTCTC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	8 cut(s)	24, 60, 116, 240, 777, 2056, 2222, 2294
Bsp1286I	GDGCHC	7 cut(s)	33, 44, 495, 504, 650, 1756, 2332
Bsp13I	TCCGGA	2 cut(s)	597, 949
Bsp1720I	GCTNAGC	3 cut(s)	960, 1158, 1755
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	9 cut(s)	51, 163, 214, 269, 423, 468, 604, 1220, 1325
BspANI	GGCC	8 cut(s)	24, 60, 116, 240, 777, 2056, 2222, 2294
BspCNI	CTCAG	7 cut(s)	952, 1150, 1573, 1762, 1768, 2290, 2602
BspDI	ATCGAT	3 cut(s)	672, 918, 1698
BspEI	TCCGGA	2 cut(s)	597, 949
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	2 cut(s)	1527, 2362
BspLI	GGNNCC	8 cut(s)	43, 503, 637, 999, 1419, 1884, 2576, 2667
BspMAI	CTGCAG	3 cut(s)	1303, 1909, 2347
BspMI	ACCTGC	3 cut(s)	2116, 2315, 2489
BspPI	GGATC	5 cut(s)	102, 614, 2011, 2126, 2423
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	2 cut(s)	501, 1882
BsrDI	GCAATG	1 cut(s)	1979
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	6 cut(s)	970, 1459, 1884, 1934, 1969, 2223
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	7 cut(s)	36, 46, 66, 111, 496, 1272, 2289
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2289
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	624, 774
Bst4CI	ACNGT	9 cut(s)	463, 893, 1035, 1082, 1389, 1501, 1844, 2404, 2482
Bst6I	CTCTTC	4 cut(s)	114, 338, 878, 2252
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstBAI	YACGTR	2 cut(s)	684, 2162
BstC8I	GCNNGC	5 cut(s)	33, 443, 1155, 1641, 2058
BstDEI	CTNAG	9 cut(s)	747, 960, 991, 1158, 1581, 1755, 1770, 2298, 2610
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	9 cut(s)	180, 210, 261, 378, 829, 1294, 1913, 2602, 2701
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	542, 1783
BstHHI	GCGC	5 cut(s)	192, 309, 541, 1344, 1782
BstMAI	GTCTC	2 cut(s)	331, 452
BstMCI	CGRYCG	2 cut(s)	25, 1081
BstNI	CCWGG	2 cut(s)	624, 774
BstNSI	RCATGY	2 cut(s)	1220, 1643
BstSCI	CCNGG	3 cut(s)	24, 622, 772
BstSFI	CTRYAG	3 cut(s)	1299, 1905, 2343
BstSLI	GKGCMC	3 cut(s)	504, 650, 2332
BstSNI	TACGTA	1 cut(s)	684
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	8 cut(s)	19, 844, 1648, 1891, 2224, 2329, 2333, 2574
BstV2I	GAAGAC	3 cut(s)	292, 1692, 1838
BstX2I	RGATCY	2 cut(s)	1627, 2428
BstYI	RGATCY	2 cut(s)	1627, 2428
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	3 cut(s)	672, 918, 1698
BsuRI	GGCC	8 cut(s)	24, 60, 116, 240, 777, 2056, 2222, 2294
BsuTUI	ATCGAT	3 cut(s)	672, 918, 1698
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	9 cut(s)	180, 210, 261, 378, 829, 1294, 1913, 2602, 2701
BtsI	GCAGTG	2 cut(s)	2352, 2572
BtsIMutI	CAGTG	6 cut(s)	1452, 1877, 2352, 2398, 2557, 2572
BveI	ACCTGC	3 cut(s)	2116, 2315, 2489
Cac8I	GCNNGC	5 cut(s)	33, 443, 1155, 1641, 2058
CaiI	CAGNNNCTG	2 cut(s)	1940, 2342
CciI	TCATGA	2 cut(s)	1527, 2362
CfoI	GCGC	5 cut(s)	192, 309, 541, 1344, 1782
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	4 cut(s)	776, 997, 2492, 2666
ClaI	ATCGAT	3 cut(s)	672, 918, 1698
CseI	GACGC	3 cut(s)	237, 254, 289
Csp6I	GTAC	5 cut(s)	205, 1385, 1937, 2142, 2412
CviQI	GTAC	5 cut(s)	205, 1385, 1937, 2142, 2412
DdeI	CTNAG	9 cut(s)	747, 960, 991, 1158, 1581, 1755, 1770, 2298, 2610
DraIII	CACNNNGTG	1 cut(s)	645
DrdI	GACNNNNNNGTC	2 cut(s)	296, 2546
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	2 cut(s)	296, 2546
EaeI	YGGCCR	3 cut(s)	22, 58, 2220
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	4 cut(s)	114, 338, 878, 2252
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	4 cut(s)	114, 338, 878, 2252
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	2 cut(s)	31, 493
EclXI	CGGCCG	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2289
Eco147I	AGGCCT	2 cut(s)	2056, 2294
Eco24I	GRGCYC	3 cut(s)	33, 44, 495
Eco47I	GGWCC	3 cut(s)	997, 2492, 2666
Eco47III	AGCGCT	1 cut(s)	1781
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	31, 493
Eco57I	CTGAAG	4 cut(s)	740, 860, 1364, 2374
Eco72I	CACGTG	1 cut(s)	2162
EcoICRI	GAGCTC	2 cut(s)	31, 493
EcoO109I	RGGNCCY	3 cut(s)	776, 997, 2666
EcoRII	CCWGG	2 cut(s)	622, 772
EcoT14I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2289
EcoT22I	ATGCAT	1 cut(s)	1543
EcoT38I	GRGCYC	3 cut(s)	33, 44, 495
ErhI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2289
Esp3I	CGTCTC	1 cut(s)	331
FalI	AAGNNNNNCTT	2 cut(s)	2439, 2471
FauI	CCCGC	2 cut(s)	475, 1213
FbaI	TGATCA	1 cut(s)	2458
FblI	GTMKAC	3 cut(s)	222, 931, 1077
FokI	GGATG	9 cut(s)	167, 197, 248, 365, 816, 1301, 1900, 2609, 2708
FriOI	GRGCYC	3 cut(s)	33, 44, 495
FspBI	CTAG	5 cut(s)	497, 1956, 2094, 2409, 2767
FspI	TGCGCA	1 cut(s)	1343
GlaI	GCGC	5 cut(s)	191, 308, 540, 1343, 1781
GsuI	CTGGAG	5 cut(s)	645, 1616, 1884, 2187, 2358
HaeII	RGCGCY	2 cut(s)	542, 1783
HaeIII	GGCC	8 cut(s)	24, 60, 116, 240, 777, 2056, 2222, 2294
HapII	CCGG	4 cut(s)	25, 312, 598, 950
HgaI	GACGC	3 cut(s)	237, 254, 289
HhaI	GCGC	5 cut(s)	192, 309, 541, 1344, 1782
Hin6I	GCGC	5 cut(s)	190, 307, 539, 1342, 1780
HinP1I	GCGC	5 cut(s)	190, 307, 539, 1342, 1780
HincII	GTYRAC	4 cut(s)	373, 932, 1078, 2586
HindII	GTYRAC	4 cut(s)	373, 932, 1078, 2586
HindIII	AAGCTT	2 cut(s)	1361, 1830
HinfI	GANTC	3 cut(s)	1331, 2396, 2681
HpaII	CCGG	4 cut(s)	25, 312, 598, 950
HphI	GGTGA	3 cut(s)	283, 1081, 1243
Hpy166II	GTNNAC	7 cut(s)	223, 373, 932, 1078, 2228, 2330, 2586
Hpy8I	GTNNAC	7 cut(s)	223, 373, 932, 1078, 2228, 2330, 2586
Hpy99I	CGWCG	9 cut(s)	230, 248, 253, 290, 347, 416, 458, 571, 574
HpyAV	CCTTC	7 cut(s)	193, 379, 502, 520, 1234, 2311, 2441
HpyCH4III	ACNGT	9 cut(s)	463, 893, 1035, 1082, 1389, 1501, 1844, 2404, 2482
HpyCH4IV	ACGT	3 cut(s)	225, 683, 2161
HpyF3I	CTNAG	9 cut(s)	747, 960, 991, 1158, 1581, 1755, 1770, 2298, 2610
HpySE526I	ACGT	3 cut(s)	225, 683, 2161
HspAI	GCGC	5 cut(s)	190, 307, 539, 1342, 1780
Kpn2I	TCCGGA	2 cut(s)	597, 949
Ksp22I	TGATCA	1 cut(s)	2458
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	9 cut(s)	4, 28, 47, 490, 498, 635, 1150, 1174, 2422
Lsp1109I	GCAGC	8 cut(s)	19, 844, 1648, 1891, 2224, 2329, 2333, 2574
MaeI	CTAG	5 cut(s)	497, 1956, 2094, 2409, 2767
MaeII	ACGT	3 cut(s)	225, 683, 2161
MaeIII	GTNAC	6 cut(s)	887, 1516, 1838, 2304, 2404, 2719
MflI	RGATCY	2 cut(s)	1627, 2428
MhlI	GDGCHC	7 cut(s)	33, 44, 495, 504, 650, 1756, 2332
MlsI	TGGCCA	1 cut(s)	2222
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	2222
MmeI	TCCRAC	2 cut(s)	1756, 2424
Mox20I	TGGCCA	1 cut(s)	2222
Mph1103I	ATGCAT	1 cut(s)	1543
MroI	TCCGGA	2 cut(s)	597, 949
MroXI	GAANNNNTTC	3 cut(s)	1435, 1929, 2451
MscI	TGGCCA	1 cut(s)	2222
MseI	TTAA	5 cut(s)	1107, 1793, 1800, 1835, 2016
MslI	CAYNNNNRTG	4 cut(s)	674, 1141, 1644, 2337
Msp20I	TGGCCA	1 cut(s)	2222
MspA1I	CMGCKG	2 cut(s)	1556, 1904
MspI	CCGG	4 cut(s)	25, 312, 598, 950
MspR9I	CCNGG	3 cut(s)	26, 624, 774
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	624, 774
MvnI	CGCG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	36
NlaIV	GGNNCC	8 cut(s)	43, 503, 637, 999, 1419, 1884, 2576, 2667
NmeAIII	GCCGAG	1 cut(s)	1297
NmuCI	GTSAC	3 cut(s)	887, 1838, 2304
NsbI	TGCGCA	1 cut(s)	1343
NsiI	ATGCAT	1 cut(s)	1543
NspI	RCATGY	2 cut(s)	1220, 1643
PaeI	GCATGC	1 cut(s)	1643
PagI	TCATGA	2 cut(s)	1527, 2362
PaqCI	CACCTGC	2 cut(s)	2315, 2489
PceI	AGGCCT	2 cut(s)	2056, 2294
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 225, 294, 647
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	1435, 1929, 2451
PfeI	GAWTC	3 cut(s)	1331, 2396, 2681
PflFI	GACNNNGTC	2 cut(s)	83, 1051
PflMI	CCANNNNNTGG	1 cut(s)	2443
PfoI	TCCNGGA	1 cut(s)	622
PmaCI	CACGTG	1 cut(s)	2162
PmlI	CACGTG	1 cut(s)	2162
Ppu21I	YACGTR	2 cut(s)	684, 2162
PpuMI	RGGWCCY	2 cut(s)	997, 2666
Psp124BI	GAGCTC	2 cut(s)	33, 495
Psp5II	RGGWCCY	2 cut(s)	997, 2666
Psp6I	CCWGG	2 cut(s)	622, 772
PspCI	CACGTG	1 cut(s)	2162
PspGI	CCWGG	2 cut(s)	622, 772
PspN4I	GGNNCC	8 cut(s)	43, 503, 637, 999, 1419, 1884, 2576, 2667
PspPI	GGNCC	4 cut(s)	776, 997, 2492, 2666
PspPPI	RGGWCCY	2 cut(s)	997, 2666
PsrI	GAACNNNNNNTAC	2 cut(s)	2004, 2036
PstI	CTGCAG	3 cut(s)	1303, 1909, 2347
PstNI	CAGNNNCTG	2 cut(s)	1940, 2342
PsuI	RGATCY	2 cut(s)	1627, 2428
PsyI	GACNNNGTC	2 cut(s)	83, 1051
PvuII	CAGCTG	2 cut(s)	1556, 1904
RsaI	GTAC	5 cut(s)	206, 1386, 1938, 2143, 2413
RsaNI	GTAC	5 cut(s)	205, 1385, 1937, 2142, 2412
RseI	CAYNNNNRTG	4 cut(s)	674, 1141, 1644, 2337
SacI	GAGCTC	2 cut(s)	33, 495
SalI	GTCGAC	2 cut(s)	930, 1076
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	1107, 1793, 1800, 1835, 2016
Sau96I	GGNCC	4 cut(s)	776, 997, 2492, 2666
ScaI	AGTACT	2 cut(s)	2143, 2413
ScrFI	CCNGG	3 cut(s)	26, 624, 774
SduI	GDGCHC	7 cut(s)	33, 44, 495, 504, 650, 1756, 2332
SfcI	CTRYAG	3 cut(s)	1299, 1905, 2343
SinI	GGWCC	3 cut(s)	997, 2492, 2666
SmiMI	CAYNNNNRTG	4 cut(s)	674, 1141, 1644, 2337
SmlI	CTYRAG	5 cut(s)	11, 861, 871, 2176, 2637
SmoI	CTYRAG	5 cut(s)	11, 861, 871, 2176, 2637
SnaBI	TACGTA	1 cut(s)	684
SpeI	ACTAGT	1 cut(s)	2408
SphI	GCATGC	1 cut(s)	1643
SseBI	AGGCCT	2 cut(s)	2056, 2294
SsiI	CCGC	9 cut(s)	51, 163, 214, 269, 423, 468, 604, 1220, 1325
SspMI	CTAG	5 cut(s)	497, 1956, 2094, 2409, 2767
SstI	GAGCTC	2 cut(s)	33, 495
StuI	AGGCCT	2 cut(s)	2056, 2294
StyD4I	CCNGG	3 cut(s)	24, 622, 772
StyI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2289
TaaI	ACNGT	9 cut(s)	463, 893, 1035, 1082, 1389, 1501, 1844, 2404, 2482
TaiI	ACGT	3 cut(s)	228, 686, 2164
TatI	WGTACW	3 cut(s)	204, 2141, 2411
TauI	GCSGC	3 cut(s)	54, 165, 607
TfiI	GAWTC	3 cut(s)	1331, 2396, 2681
Tru1I	TTAA	5 cut(s)	1107, 1793, 1800, 1835, 2016
Tru9I	TTAA	5 cut(s)	1107, 1793, 1800, 1835, 2016
TscAI	CASTG	6 cut(s)	1459, 1884, 2352, 2398, 2557, 2572
TseFI	GTSAC	3 cut(s)	887, 1838, 2304
TseI	GCWGC	8 cut(s)	7, 857, 1636, 1904, 2212, 2321, 2342, 2562
Tsp45I	GTSAC	3 cut(s)	887, 1838, 2304
TspGWI	ACGGA	2 cut(s)	1356, 2409
TspRI	CASTG	6 cut(s)	1459, 1884, 2352, 2398, 2557, 2572
Tth111I	GACNNNGTC	2 cut(s)	83, 1051
Van91I	CCANNNNNTGG	1 cut(s)	2443
VneI	GTGCAC	1 cut(s)	2328
VpaK11BI	GGWCC	3 cut(s)	997, 2492, 2666
XapI	RAATTY	5 cut(s)	592, 1533, 1788, 2149, 2196
XceI	RCATGY	2 cut(s)	1220, 1643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1179
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	3 cut(s)	222, 931, 1077
XmnI	GAANNNNTTC	3 cut(s)	1435, 1929, 2451
XspI	CTAG	5 cut(s)	497, 1956, 2094, 2409, 2767
ZrmI	AGTACT	2 cut(s)	2143, 2413
Zsp2I	ATGCAT	1 cut(s)	1543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.