Prupe.2G068200_v2.0.a1

AP-4 complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
9726003 .. 9732826
6824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G068200.1

Sequence Viewer

Length: 1239 bp
ATGAAGCAGCTCCCAGTGCACGCGATGTCCGATGACTGTTGCATCTCAGCGTCGGCAGAAAAATCACCGTCTTCTATTTCGCATCTGATCTCCAATTTCAGGAAGCGGCTTTGTGATAACGATCTAGGAGTCATGGGGGTCATGCTCTGCCCGTTGTTTGACCTCATTACCATCGATGTGAAAATTCTTATGAGGATTTGGTGGAAGTGTGATTCTACCAGTAATATAGGAAATGCTGTACTTTATGAGTGTATTTGTTGGGGAGTGGTCGAATTACTCATTTCAAGGCTTACAATGCCCTTTGTTTTTCATATTCCTCAACTCAAAGTGAATCTTTTGTCAGTGCACCAACTTTGTAAGGATAACAACTGCTATAGTGTGTTTGATGTCTTTGGTTTCTTAATACTGGACAAAGTCACTCATCAGTGTCAATCTTTGGTGGAAGAATTGTCAGCTTCTCACTCAACAGATCTGCAGCAGCGTGCATATGAATTGCAAGCTATCATTAGCTTAGATTCTCCTGCAGTTGAGAGTATTATGCTGTCAGACGCAAGTTTTGAAGACATTGAGATTGATAAAAGCCTTTCATTCCTCAATGGCTATGTCCAACAAGCACTAGAGAAAGGTGCTCAGCCCTATATTCCCGAGAACGAGCGCTCTGGAATGTTAAATATCAGCAACTTCAGTAACCAAGATCAGCATGAAGCTTTAACCCGTGGTCTTAGGTTTGAGGCATATGAGCATCCAAAGCCAGCAGTGCCATCAGGAATTCCTCCAGCTGCAGTTGCATCCTCAACCGAGCTTGTTCCAGTTCCTGAACCATCTTATGCTAGGGAGATCCGCCAGCAGCCTGCATCATTGCCACCTATGTCAGATGCAGGATTATCGGAACTTAAGTTACGGCTAGATTGTGTTCAAAGAAAATGGGCATTGTCGATCTCAAATTCCTCGAGTTGTAGTTCCCAGAAATCAGCGAATGGGGTCACACAAATAGATAGCATGAGCACTTCAAATCCAAAAGCACGTGATTCTTATGAGTCAAGGAGGCCCCAGGTGTCTAAGGCGAATATCCATGCTTCAGAGAAGACCCAGGTACCAAAGGCAGCAATTGTACACACTGAAGTTAATCATGAACCTGCTCCGGACTTGCTCGATTTGGGTGACTCAACTAGTAGTACTGCTTCCACTGTAGATCCTTTCAAGCAGTTAGAGAGCTTCTTGATCAAACTGAAGCATTAA

Protein Analysis

413

Amino Acids

45.54

Weight (kDa)

5.48

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1144
Acc65I GGTACC 1 cut(s) 1093
AccB1I GGYRCC 1 cut(s) 1093
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 1141
AciI CCGC 2 cut(s) 106, 841
AclWI GGATC 2 cut(s) 832, 1187
AcsI RAATTY 3 cut(s) 183, 768, 943
AcuI CTGAAG 3 cut(s) 667, 1062, 1140
AcvI CACGTG 1 cut(s) 1025
AfaI GTAC 4 cut(s) 240, 1095, 1113, 1177
AfeI AGCGCT 1 cut(s) 656
AfiI CCNNNNNNNGG 1 cut(s) 99
AflII CTTAAG 1 cut(s) 893
AgsI TTSAA 5 cut(s) 285, 560, 917, 1011, 1201
AhlI ACTAGT 1 cut(s) 1169
AjnI CCWGG 2 cut(s) 1050, 1089
AluBI AGCT 8 cut(s) 10, 455, 500, 510, 707, 779, 802, 1215
AluI AGCT 8 cut(s) 10, 455, 500, 510, 707, 779, 802, 1215
Alw21I GWGCWC 4 cut(s) 21, 348, 631, 1007
Alw44I GTGCAC 2 cut(s) 17, 344
AlwI GGATC 2 cut(s) 832, 1187
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 2 cut(s) 644, 949
Aor13HI TCCGGA 1 cut(s) 1141
Aor51HI AGCGCT 1 cut(s) 656
AoxI GGCC 1 cut(s) 1046
ApaLI GTGCAC 2 cut(s) 17, 344
ApeKI GCWGC 6 cut(s) 7, 475, 478, 779, 847, 1103
ApoI RAATTY 3 cut(s) 183, 768, 943
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
Asp718I GGTACC 1 cut(s) 1093
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 1 cut(s) 1047
AsuHPI GGTGA 2 cut(s) 57, 1172
AvaI CYCGRG 2 cut(s) 644, 949
BaeGI GKGCMC 2 cut(s) 21, 348
BaeI ACNNNNGTAYC 2 cut(s) 1077, 1110
BanI GGYRCC 1 cut(s) 1093
BarI GAAGNNNNNNTAC 2 cut(s) 1165, 1197
BbrPI CACGTG 1 cut(s) 1025
BbsI GAAGAC 3 cut(s) 63, 567, 1091
Bbv12I GWGCWC 4 cut(s) 21, 348, 631, 1007
BbvI GCAGC 6 cut(s) 19, 487, 490, 766, 859, 1115
BccI CCATC 3 cut(s) 179, 769, 829
BceAI ACGGC 1 cut(s) 917
BcgI CGANNNNNNTGC 2 cut(s) 867, 901
BciT130I CCWGG 2 cut(s) 1052, 1091
BclI TGATCA 1 cut(s) 1221
BcuI ACTAGT 1 cut(s) 1169
BfaI CTAG 5 cut(s) 125, 617, 831, 905, 1170
BfmI CTRYAG 5 cut(s) 373, 473, 522, 780, 1188
BfoI RGCGCY 1 cut(s) 658
BfrI CTTAAG 1 cut(s) 893
BfuAI ACCTGC 1 cut(s) 1144
BglII AGATCT 1 cut(s) 469
BisI GCNGC 7 cut(s) 8, 107, 476, 479, 780, 848, 1104
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 7 cut(s) 9, 108, 477, 480, 781, 849, 1105
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 2 cut(s) 1052, 1091
BmeT110I CYCGRG 2 cut(s) 644, 949
BmgT120I GGNCC 1 cut(s) 1047
BmiI GGNNCC 2 cut(s) 1049, 1095
BmrFI CCNGG 2 cut(s) 1052, 1091
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 6 cut(s) 51, 91, 751, 797, 863, 865
BmuI ACTGGG 1 cut(s) 8
BpiI GAAGAC 3 cut(s) 63, 567, 1091
BpmI CTGGAG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 1025
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 715, 1050, 1089
BsaWI WCCGGW 1 cut(s) 1141
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 14, 219, 411, 809
Bse3DI GCAATG 1 cut(s) 857
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 1141
BseBI CCWGG 2 cut(s) 1052, 1091
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 715, 1050, 1089
BseGI GGATG 2 cut(s) 742, 788
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 2 cut(s) 60, 644
BseNI ACTGG 4 cut(s) 14, 219, 411, 809
BseSI GKGCMC 2 cut(s) 21, 348
BseXI GCAGC 6 cut(s) 19, 487, 490, 766, 859, 1115
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 1048
BshNI GGYRCC 1 cut(s) 1093
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 4 cut(s) 21, 348, 631, 1007
BsiHKCI CYCGRG 2 cut(s) 644, 949
BsiSI CCGG 1 cut(s) 1142
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 1048
BsoBI CYCGRG 2 cut(s) 644, 949
Bsp1286I GDGCHC 4 cut(s) 21, 348, 631, 1007
Bsp13I TCCGGA 1 cut(s) 1141
Bsp1407I TGTACA 1 cut(s) 1111
Bsp143I GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 2 cut(s) 106, 841
BspANI GGCC 1 cut(s) 1048
BspCNI CTCAG 2 cut(s) 59, 643
BspDI ATCGAT 1 cut(s) 174
BspEI TCCGGA 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 1129
BspLI GGNNCC 2 cut(s) 1049, 1095
BspMAI CTGCAG 3 cut(s) 477, 526, 784
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 2 cut(s) 832, 1187
BspT107I GGYRCC 1 cut(s) 1093
BspTI CTTAAG 1 cut(s) 893
BsrDI GCAATG 1 cut(s) 857
BsrGI TGTACA 1 cut(s) 1111
BsrI ACTGG 4 cut(s) 14, 219, 411, 809
BssECI CCNNGG 3 cut(s) 715, 1050, 1089
BssMI GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
Bst2UI CCWGG 2 cut(s) 1052, 1091
Bst4CI ACNGT 3 cut(s) 38, 69, 1189
BstAFI CTTAAG 1 cut(s) 893
BstAUI TGTACA 1 cut(s) 1111
BstBAI YACGTR 1 cut(s) 1025
BstC8I GCNNGC 6 cut(s) 21, 483, 498, 753, 845, 852
BstDEI CTNAG 5 cut(s) 46, 511, 630, 722, 1059
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 2 cut(s) 742, 788
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 8 cut(s) 90, 124, 472, 697, 840, 939, 1195, 1224
BstMBI GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 16, 295, 748, 757, 785
BstNI CCWGG 2 cut(s) 1052, 1091
BstSCI CCNGG 2 cut(s) 1050, 1089
BstSFI CTRYAG 5 cut(s) 373, 473, 522, 780, 1188
BstSLI GKGCMC 2 cut(s) 21, 348
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 6 cut(s) 19, 487, 490, 766, 859, 1115
BstV2I GAAGAC 3 cut(s) 63, 567, 1091
BstX2I RGATCY 3 cut(s) 469, 837, 1192
BstYI RGATCY 3 cut(s) 469, 837, 1192
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 1048
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 715
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 742, 788
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 6 cut(s) 21, 348, 431, 762, 1116, 1185
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 6 cut(s) 21, 483, 498, 753, 845, 852
CaiI CAGNNNCTG 1 cut(s) 815
CciI TCATGA 1 cut(s) 1129
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 1047
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 2 cut(s) 39, 557
Csp6I GTAC 4 cut(s) 239, 1094, 1112, 1176
CviAII CATG 6 cut(s) 133, 142, 701, 1000, 1073, 1130
CviQI GTAC 4 cut(s) 239, 1094, 1112, 1176
DdeI CTNAG 5 cut(s) 46, 511, 630, 722, 1059
DpnI GATC 8 cut(s) 89, 123, 471, 696, 839, 938, 1194, 1223
DpnII GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
EciI GGCGGA 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 656
Eco57I CTGAAG 3 cut(s) 667, 1062, 1140
Eco72I CACGTG 1 cut(s) 1025
Eco88I CYCGRG 2 cut(s) 644, 949
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 2 cut(s) 1050, 1089
FaeI CATG 6 cut(s) 136, 145, 704, 1003, 1076, 1133
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 6 cut(s) 132, 141, 700, 999, 1072, 1129
FauNDI CATATG 2 cut(s) 487, 736
FbaI TGATCA 1 cut(s) 1221
Fnu4HI GCNGC 7 cut(s) 8, 107, 476, 479, 780, 848, 1104
FokI GGATG 2 cut(s) 729, 775
Fsp4HI GCNGC 7 cut(s) 8, 107, 476, 479, 780, 848, 1104
FspBI CTAG 5 cut(s) 125, 617, 831, 905, 1170
GlaI GCGC 1 cut(s) 656
GluI GCNGC 7 cut(s) 8, 107, 476, 479, 780, 848, 1104
GsuI CTGGAG 1 cut(s) 759
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 1 cut(s) 1048
HapII CCGG 1 cut(s) 1142
HgaI GACGC 2 cut(s) 39, 557
HhaI GCGC 1 cut(s) 657
Hin1II CATG 6 cut(s) 136, 145, 704, 1003, 1076, 1133
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 7 cut(s) 129, 212, 331, 515, 1028, 1037, 1163
HpaII CCGG 1 cut(s) 1142
HphI GGTGA 2 cut(s) 57, 1172
Hpy166II GTNNAC 3 cut(s) 19, 346, 1114
Hpy188I TCNGA 6 cut(s) 31, 87, 547, 874, 889, 1081
Hpy188III TCNNGA 8 cut(s) 100, 644, 660, 765, 815, 1130, 1142, 1219
Hpy8I GTNNAC 3 cut(s) 19, 346, 1114
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 38, 69, 1189
HpyCH4IV ACGT 1 cut(s) 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 295, 748, 757, 785
HpyF3I CTNAG 5 cut(s) 46, 511, 630, 722, 1059
HpySE526I ACGT 1 cut(s) 1024
Hsp92II CATG 6 cut(s) 136, 145, 704, 1003, 1076, 1133
HspAI GCGC 1 cut(s) 655
Kpn2I TCCGGA 1 cut(s) 1141
KpnI GGTACC 1 cut(s) 1097
Ksp22I TGATCA 1 cut(s) 1221
Kzo9I GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
LmnI GCTCC 2 cut(s) 15, 1144
Lsp1109I GCAGC 6 cut(s) 19, 487, 490, 766, 859, 1115
LweI GCATC 6 cut(s) 51, 91, 751, 797, 863, 865
MaeI CTAG 5 cut(s) 125, 617, 831, 905, 1170
MaeII ACGT 1 cut(s) 1024
MaeIII GTNAC 5 cut(s) 415, 686, 897, 982, 1160
MalI GATC 8 cut(s) 89, 123, 471, 696, 839, 938, 1194, 1223
MboI GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
MboII GAAGA 4 cut(s) 63, 455, 572, 1096
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 3 cut(s) 469, 837, 1192
MhlI GDGCHC 4 cut(s) 21, 348, 631, 1007
MluCI AATT 8 cut(s) 94, 183, 272, 446, 491, 768, 943, 1107
MlyI GAGTC 3 cut(s) 138, 1046, 1157
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 9 cut(s) 173, 186, 327, 602, 724, 783, 802, 958, 1038
MroI TCCGGA 1 cut(s) 1141
MseI TTAA 6 cut(s) 401, 668, 710, 894, 1125, 1237
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 893
MspI CCGG 1 cut(s) 1142
MspR9I CCNGG 2 cut(s) 1052, 1091
MunI CAATTG 1 cut(s) 1107
MvaI CCWGG 2 cut(s) 1052, 1091
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 16, 295, 748, 757, 785
NdeI CATATG 2 cut(s) 487, 736
NdeII GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
NlaIII CATG 6 cut(s) 136, 145, 704, 1003, 1076, 1133
NlaIV GGNNCC 2 cut(s) 1049, 1095
NmuCI GTSAC 3 cut(s) 415, 982, 1160
PaeR7I CTCGAG 1 cut(s) 949
PagI TCATGA 1 cut(s) 1129
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 4 cut(s) 212, 331, 515, 1028
PflFI GACNNNGTC 1 cut(s) 413
PkrI GCNGC 7 cut(s) 9, 108, 477, 480, 781, 849, 1105
PleI GAGTC 3 cut(s) 137, 1045, 1157
PmaCI CACGTG 1 cut(s) 1025
PmlI CACGTG 1 cut(s) 1025
PpsI GAGTC 3 cut(s) 137, 1045, 1157
Ppu21I YACGTR 1 cut(s) 1025
Psp6I CCWGG 2 cut(s) 1050, 1089
PspCI CACGTG 1 cut(s) 1025
PspGI CCWGG 2 cut(s) 1050, 1089
PspN4I GGNNCC 2 cut(s) 1049, 1095
PspPI GGNCC 1 cut(s) 1047
PspXI VCTCGAGB 1 cut(s) 949
PsrI GAACNNNNNNTAC 2 cut(s) 882, 914
PstI CTGCAG 3 cut(s) 477, 526, 784
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 469, 837, 1192
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 4 cut(s) 240, 1095, 1113, 1177
RsaNI GTAC 4 cut(s) 239, 1094, 1112, 1176
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 6 cut(s) 401, 668, 710, 894, 1125, 1237
SatI GCNGC 7 cut(s) 8, 107, 476, 479, 780, 848, 1104
Sau3AI GATC 8 cut(s) 87, 121, 469, 694, 837, 936, 1192, 1221
Sau96I GGNCC 1 cut(s) 1047
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 3 cut(s) 138, 1046, 1157
ScrFI CCNGG 2 cut(s) 1052, 1091
SduI GDGCHC 4 cut(s) 21, 348, 631, 1007
SfaNI GCATC 6 cut(s) 51, 91, 751, 797, 863, 865
SfcI CTRYAG 5 cut(s) 373, 473, 522, 780, 1188
Sfr274I CTCGAG 1 cut(s) 949
SlaI CTCGAG 1 cut(s) 949
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 893, 949
SmoI CTYRAG 2 cut(s) 893, 949
SpeI ACTAGT 1 cut(s) 1169
Sse9I AATT 8 cut(s) 94, 183, 272, 446, 491, 768, 943, 1107
SsiI CCGC 2 cut(s) 106, 841
SspMI CTAG 5 cut(s) 125, 617, 831, 905, 1170
StyD4I CCNGG 2 cut(s) 1050, 1089
TaaI ACNGT 3 cut(s) 38, 69, 1189
TaiI ACGT 1 cut(s) 1027
TaqI TCGA 5 cut(s) 174, 270, 935, 950, 1152
TasI AATT 8 cut(s) 94, 183, 272, 446, 491, 768, 943, 1107
TatI WGTACW 3 cut(s) 238, 1111, 1175
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 4 cut(s) 212, 331, 515, 1028
Tru1I TTAA 6 cut(s) 401, 668, 710, 894, 1125, 1237
Tru9I TTAA 6 cut(s) 401, 668, 710, 894, 1125, 1237
TscAI CASTG 6 cut(s) 21, 348, 431, 762, 1123, 1192
TseFI GTSAC 3 cut(s) 415, 982, 1160
TseI GCWGC 6 cut(s) 7, 475, 478, 779, 847, 1103
Tsp45I GTSAC 3 cut(s) 415, 982, 1160
TspDTI ATGAA 6 cut(s) 17, 299, 504, 576, 717, 1146
TspRI CASTG 6 cut(s) 21, 348, 431, 762, 1123, 1192
Tth111I GACNNNGTC 1 cut(s) 413
Vha464I CTTAAG 1 cut(s) 893
VneI GTGCAC 2 cut(s) 17, 344
XapI RAATTY 3 cut(s) 183, 768, 943
XhoI CTCGAG 1 cut(s) 949
XspI CTAG 5 cut(s) 125, 617, 831, 905, 1170
ZrmI AGTACT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.