Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8035246.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 309

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8035246.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

cctgacatccccaagcgcaagatgaaggagtacatcatccgcctcgtctacgtcgaaatgttaggccacgacgcgtcgttcacctacatccatgcggtgaagatgacgcacgatgacaatctcgtcttcaagcacaccggctacctcgccgtctctctcttcctcaacgacgatcactacctcatcattctcatcgtcaacaccatccagaaggacttgaagtctgacaattacctcgtcgtttgcaccgccctcaatgccgtctgcaagctcatcaacgatgagactgttcccaccgtttttccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

6.2

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	40, 95, 249
AfaI	GTAC	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	130, 220
AhdI	GACNNNNNGTC	1 cut(s)	220
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	157, 278
AoxI	GGCC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	73, 109
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	134, 245
BcoDI	GTCTC	2 cut(s)	157, 278
BmeRI	GACNNNNNGTC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	117
BseGI	GGATG	4 cut(s)	6, 36, 87, 204
BseJI	GATNNNNATC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	157, 278
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	40, 95, 249
BspANI	GGCC	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	289, 298
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	6, 36, 87, 204
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	157, 278
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	6, 36, 87, 204
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	137
CseI	GACGC	3 cut(s)	63, 80, 115
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	66, 141, 271
CviKI_1	RGCY	3 cut(s)	66, 141, 271
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	164
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 307
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	3 cut(s)	23, 74, 191
GlaI	GCGC	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	3 cut(s)	63, 80, 115
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	73, 109
Hpy166II	GTNNAC	3 cut(s)	49, 81, 199
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	49, 81, 199
Hpy99I	CGWCG	5 cut(s)	56, 74, 79, 173, 242
HpyAV	CCTTC	2 cut(s)	19, 205
HpyCH4III	ACNGT	2 cut(s)	289, 298
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	246, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	15, 151, 221
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	112, 118, 151
MluCI	AATT	1 cut(s)	229
MluI	ACGCGT	1 cut(s)	72
MnlI	CCTC	6 cut(s)	53, 155, 173, 191, 245, 263
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	172
SetI	ASST	6 cut(s)	54, 86, 147, 183, 237, 273
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	40, 95, 249
TaaI	ACNGT	2 cut(s)	289, 298
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.