Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

11089192 .. 11089577

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCGATGGGCTCGCAGGGCGGCTTCGAAAATGTCGGGTGGGGGGGGGATGGAGCGGGTTCTGGGTTTTATTTTATTTATTTATTTATTTTCACCATTGTTCTCGGCATCGAGAAGAAGTCCACCGCCAAGCTCCAGGACTCCAGGTACCGAGATCACACACACAAAGTGCTTTCTTTGCTTTTATCATTGAAGTGGGCTTTAGGGTTAGGGTTTTTTAATCGCATCGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

9.1

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	51, 86, 156
AcoI	YGGCCR	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	165, 173
AluBI	AGCT	3 cut(s)	10, 31, 163
AluI	AGCT	3 cut(s)	10, 31, 163
Alw21I	GWGCWC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	7
Asp718I	GGTACC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	33, 44
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	26, 31, 74
BciT130I	CCWGG	2 cut(s)	167, 175
BcnI	CCSGG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	8, 52
BlsI	GCNGC	2 cut(s)	9, 53
Bme1390I	CCNGG	3 cut(s)	26, 167, 175
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	3 cut(s)	26, 167, 175
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	149, 157
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	167, 175
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	33, 44
Bsp143I	GATC	1 cut(s)	184
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	3 cut(s)	51, 86, 156
BspANI	GGCC	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	86
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	167, 175
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	33, 44
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 208
BstNI	CCWGG	2 cut(s)	167, 175
BstSCI	CCNGG	3 cut(s)	24, 165, 173
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	85
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	33, 44
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	178
CviJI	RGCY	7 cut(s)	10, 24, 31, 42, 54, 163, 230
CviKI_1	RGCY	7 cut(s)	10, 24, 31, 42, 54, 163, 230
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	33, 44
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	165, 173
EcoT38I	GRGCYC	2 cut(s)	33, 44
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	8, 52
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	33, 44
Fsp4HI	GCNGC	2 cut(s)	8, 52
GluI	GCNGC	2 cut(s)	8, 52
GsuI	CTGGAG	2 cut(s)	149, 157
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	13, 34, 142
Hpy8I	GTNNAC	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 208
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	4 cut(s)	4, 28, 83, 168
LpnPI	CCDG	7 cut(s)	32, 38, 78, 152, 160, 179, 187
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	147
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	33, 44
MlyI	GAGTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	223
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	3 cut(s)	26, 167, 175
MvaI	CCWGG	2 cut(s)	167, 175
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	48, 208
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	114
NruI	TCGCGA	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	9, 53
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	165, 173
PspGI	CCWGG	2 cut(s)	165, 173
PspN4I	GGNNCC	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	8, 52
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	26, 167, 175
SduI	GDGCHC	2 cut(s)	33, 44
SetI	ASST	4 cut(s)	12, 33, 165, 179
SfaNI	GCATC	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	3 cut(s)	51, 86, 156
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	24, 165, 173
TaqI	TCGA	3 cut(s)	57, 141, 258
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.