Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

21042236 .. 21042637

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTAGCTATGGGCTCCCAGGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCAAAGGCGGAGGAGGAGCGCATAGTTCTCCTCGAGATCGAAACCCTTAAACGACGTCTCTCCGAGCCCGAAATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGTCACGACGGTTCCTTCGCCTACATTCACGCCGTTAAGATGACTCACGACGATAGCCTCCTCCTCAAGCGCACTGGTTACCTCGCCGTTTCCCTCTTCCTCAGTGACGATCGACGATCTGATCATCTTGATCGTCAACACCATCCAGAAGGATCTCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

134

Amino Acids

15.28

Weight (kDa)

6.6

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 114	1.2e-06	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	3 cut(s)	51, 116, 214
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	2 cut(s)	22, 58
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	24, 67
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	10, 31, 35, 104
AluI	AGCT	4 cut(s)	10, 31, 35, 104
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	22, 58
ApeKI	GCWGC	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspLEI	GCGC	3 cut(s)	129, 192, 309
AsuC2I	CCSGG	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	44, 177
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	26, 101, 387
BceAI	ACGGC	2 cut(s)	254, 308
BciT130I	CCWGG	1 cut(s)	47
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	8, 52
BlsI	GCNGC	2 cut(s)	9, 53
Bme1390I	CCNGG	2 cut(s)	26, 47
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	43, 250
BmrFI	CCNGG	2 cut(s)	26, 47
BmtI	GCTAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	45, 46, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 67
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	45, 46, 66
BseGI	GGATG	2 cut(s)	210, 379
BseLI	CCNNNNNNNGG	2 cut(s)	24, 67
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	5 cut(s)	128, 134, 137, 287, 290
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	19
Bsh1285I	CGRYCG	2 cut(s)	25, 349
BshFI	GGCC	2 cut(s)	24, 60
BsiEI	CGRYCG	2 cut(s)	25, 349
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	24, 67
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	24, 60
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	44, 177
Bsp143I	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
BspACI	CCGC	3 cut(s)	51, 116, 214
BspANI	GGCC	2 cut(s)	24, 60
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	43, 250
BspOI	GCTAGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	45, 46, 66
BssMI	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
BssNI	GRCGYC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	338, 393
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	210, 379
BstHHI	GCGC	3 cut(s)	129, 192, 309
BstKTI	GATC	7 cut(s)	110, 147, 349, 356, 361, 370, 392
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
BstMCI	CGRYCG	2 cut(s)	25, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 57
BstNI	CCWGG	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	24, 45
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	24, 60
BtsCI	GGATG	2 cut(s)	210, 379
BtsIMutI	CAGTG	2 cut(s)	309, 346
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	3 cut(s)	129, 192, 309
Csp6I	GTAC	1 cut(s)	205
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	338, 393
DpnI	GATC	7 cut(s)	109, 146, 348, 355, 360, 369, 391
DpnII	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
EaeI	YGGCCR	2 cut(s)	22, 58
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	2 cut(s)	131, 203
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	44, 177
Eco52I	CGGCCG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	44, 177
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	170
FaiI	YATR	2 cut(s)	38, 131
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	8, 52
FokI	GGATG	2 cut(s)	197, 366
FriOI	GRGCYC	2 cut(s)	44, 177
Fsp4HI	GCNGC	2 cut(s)	8, 52
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	3 cut(s)	128, 191, 308
GluI	GCNGC	2 cut(s)	8, 52
HaeIII	GGCC	2 cut(s)	24, 60
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	3 cut(s)	129, 192, 309
Hin1I	GRCGYC	1 cut(s)	163
Hin6I	GCGC	3 cut(s)	127, 190, 307
HinP1I	GCGC	3 cut(s)	127, 190, 307
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	223, 374
Hpy188I	TCNGA	3 cut(s)	172, 358, 401
Hpy188III	TCNNGA	6 cut(s)	13, 142, 242, 284, 365, 383
Hpy8I	GTNNAC	2 cut(s)	223, 374
Hpy99I	CGWCG	5 cut(s)	165, 230, 248, 290, 354
HpyAV	CCTTC	3 cut(s)	193, 262, 380
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	2 cut(s)	163, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 57
HpyF3I	CTNAG	2 cut(s)	338, 393
HpySE526I	ACGT	2 cut(s)	163, 225
Hsp92I	GRCGYC	1 cut(s)	163
HspAI	GCGC	3 cut(s)	127, 190, 307
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
LmnI	GCTCC	4 cut(s)	4, 28, 47, 124
LpnPI	CCDG	6 cut(s)	32, 38, 59, 297, 380, 396
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	163, 225
MaeIII	GTNAC	3 cut(s)	239, 314, 341
MalI	GATC	7 cut(s)	109, 146, 348, 355, 360, 369, 391
MboI	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
MboII	GAAGA	1 cut(s)	325
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	44, 177
MlyI	GAGTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	156, 273
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	26, 47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	48, 57
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
NheI	GCTAGC	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	43, 250
NmuCI	GTSAC	2 cut(s)	239, 341
PaeR7I	CTCGAG	1 cut(s)	140
PasI	CCCWGGG	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	9, 53
Ple19I	CGATCG	1 cut(s)	349
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	43, 250
PsuI	RGATCY	1 cut(s)	389
PsyI	GACNNNGTC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	156, 273
SatI	GCNGC	2 cut(s)	8, 52
Sau3AI	GATC	7 cut(s)	107, 144, 346, 353, 358, 367, 389
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	26, 47
SduI	GDGCHC	2 cut(s)	44, 177
SetI	ASST	9 cut(s)	12, 33, 37, 84, 106, 166, 228, 321, 399
Sfr274I	CTCGAG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	3 cut(s)	11, 140, 302
SmoI	CTYRAG	3 cut(s)	11, 140, 302
SsiI	CCGC	3 cut(s)	51, 116, 214
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	24, 45
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	2 cut(s)	166, 228
TaqI	TCGA	6 cut(s)	78, 106, 141, 147, 228, 349
TaqII	GACCGA	1 cut(s)	227
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	156, 273
Tru9I	TTAA	2 cut(s)	156, 273
TscAI	CASTG	2 cut(s)	316, 346
TseFI	GTSAC	2 cut(s)	239, 341
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	239, 341
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	316, 346
Tth111I	GACNNNGTC	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.