Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

21042771 .. 21043790

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGCTTCACCGGTTTTATCAGAAATCGCCCTCCTCTGTTTCGCATCTAGTGTCGAATTTTCGGAAGCGGCTTTGCGATAACGATCCGGGCGTCATGGGTGCCACGCTCTGGCCGCTGTTTGATCTCATTACCATCGATGTGAATTCTTATAAGGATTTGGTGGTCAGCTTTGTCAGCATTCTCAAGCAGGTCGCCGAGCGCAGGTTGCCCAAGGCCTACGATTACCATCAGCTTCCGGCACCCTTTATTCAGATTAGGTTGTTGAAGATTTTGGCATTGTTGGGGAGTGGTGATAAGCAATCAAGTGAGAGCATGTATATGGTAGTCGGCGATATATTTCGGAAGAGCGAATCCACAAGTAATATTGGAAATGCTGTTCTTTATGAGTGCATTTGTTGCGTTTCTTCCATATATCCTAATCCTAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCACAATTTGAAATATATGGGCATTGATGCCCTTGGTCGACTGATAAAGATTAGTCCAGAGATTGCCGAGCAACACCAACTAGCCGTCATCGATTGCTTAGAGGACCCAGATGATACTCTGAAGCGAAAAACGTTTGAATTATTGTACAAGATGACCAAGTCCTCCAATGTGGAAGTAATTGTGGATCGTATGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

7.63

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	2 - 224	5.5e-29	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
Acc36I	ACCTGC	2 cut(s)	181, 195
AccB1I	GGYRCC	2 cut(s)	101, 241
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	2 cut(s)	70, 116
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	2 cut(s)	80, 672
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	58, 145
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	111, 204
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	268, 469, 490, 617
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	2 cut(s)	171, 235
AluI	AGCT	2 cut(s)	171, 235
AlwI	GGATC	2 cut(s)	80, 672
AoxI	GGCC	2 cut(s)	113, 216
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	58, 145
AsiGI	ACCGGT	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	7, 204
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	2 cut(s)	101, 241
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	143, 237
BceAI	ACGGC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	90
BfaI	CTAG	2 cut(s)	50, 560
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	2 cut(s)	181, 195
BisI	GCNGC	3 cut(s)	71, 116, 444
BlsI	GCNGC	3 cut(s)	72, 117, 445
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	3 cut(s)	103, 243, 585
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	55, 496
BpuEI	CTTGAG	3 cut(s)	170, 432, 442
BpuMI	CCSGG	1 cut(s)	90
Bsa29I	ATCGAT	2 cut(s)	138, 570
BsaBI	GATNNNNATC	2 cut(s)	84, 228
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	213, 511
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 204
Bse118I	RCCGGY	1 cut(s)	12
Bse8I	GATNNNNATC	2 cut(s)	84, 228
BseCI	ATCGAT	2 cut(s)	138, 570
BseDI	CCNNGG	2 cut(s)	213, 511
BseJI	GATNNNNATC	2 cut(s)	84, 228
BseLI	CCNNNNNNNGG	2 cut(s)	111, 204
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	115, 218
BshNI	GGYRCC	2 cut(s)	101, 241
BshTI	ACCGGT	1 cut(s)	12
BshVI	ATCGAT	2 cut(s)	138, 570
BsiSI	CCGG	3 cut(s)	13, 89, 239
BslI	CCNNNNNNNGG	2 cut(s)	111, 204
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	115, 218
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	85, 124, 664
BspACI	CCGC	2 cut(s)	70, 116
BspANI	GGCC	2 cut(s)	115, 218
BspDI	ATCGAT	2 cut(s)	138, 570
BspLI	GGNNCC	3 cut(s)	103, 243, 585
BspMI	ACCTGC	2 cut(s)	181, 195
BspPI	GGATC	2 cut(s)	80, 672
BspQI	GCTCTTC	1 cut(s)	341
BspT107I	GGYRCC	2 cut(s)	101, 241
BsrFI	RCCGGY	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	213, 511
BssMI	GATC	3 cut(s)	85, 124, 664
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	213, 511
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	341, 464
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	624
BstDEI	CTNAG	2 cut(s)	426, 577
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 204
BstKTI	GATC	3 cut(s)	88, 127, 667
BstMBI	GATC	3 cut(s)	85, 124, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 177, 208, 399
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	430
Bsu15I	ATCGAT	2 cut(s)	138, 570
BsuRI	GGCC	2 cut(s)	115, 218
BsuTUI	ATCGAT	2 cut(s)	138, 570
BveI	ACCTGC	2 cut(s)	181, 195
CfoI	GCGC	2 cut(s)	7, 204
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	583
ClaI	ATCGAT	2 cut(s)	138, 570
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	625
CspAI	ACCGGT	1 cut(s)	12
CviAII	CATG	2 cut(s)	97, 316
CviJI	RGCY	7 cut(s)	73, 115, 171, 218, 235, 443, 563
CviKI_1	RGCY	7 cut(s)	73, 115, 171, 218, 235, 443, 563
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	2 cut(s)	426, 577
DpnI	GATC	3 cut(s)	87, 126, 666
DpnII	GATC	3 cut(s)	85, 124, 664
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	341, 464
EarI	CTCTTC	2 cut(s)	341, 464
Eco130I	CCWWGG	2 cut(s)	213, 511
Eco147I	AGGCCT	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	213, 511
ErhI	CCWWGG	2 cut(s)	213, 511
FaeI	CATG	2 cut(s)	100, 319
FatI	CATG	2 cut(s)	96, 315
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	71, 116, 444
Fsp4HI	GCNGC	3 cut(s)	71, 116, 444
FspBI	CTAG	2 cut(s)	50, 560
GlaI	GCGC	2 cut(s)	6, 203
GluI	GCNGC	3 cut(s)	71, 116, 444
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	115, 218
HapII	CCGG	3 cut(s)	13, 89, 239
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	7, 204
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	100, 319
Hin6I	GCGC	2 cut(s)	5, 202
HinP1I	GCGC	2 cut(s)	5, 202
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	3 cut(s)	13, 89, 239
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	5 cut(s)	24, 66, 255, 345, 600
Hpy188III	TCNNGA	2 cut(s)	459, 536
Hpy8I	GTNNAC	1 cut(s)	518
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	1 cut(s)	393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 177, 208, 399
HpyF3I	CTNAG	2 cut(s)	426, 577
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	100, 319
HspAI	GCGC	2 cut(s)	5, 202
Kzo9I	GATC	3 cut(s)	85, 124, 664
LguI	GCTCTTC	1 cut(s)	341
LpnPI	CCDG	9 cut(s)	26, 97, 102, 176, 190, 252, 425, 549, 600
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	2 cut(s)	55, 496
MaeI	CTAG	2 cut(s)	50, 560
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	473, 479
MalI	GATC	3 cut(s)	87, 126, 666
MboI	GATC	3 cut(s)	85, 124, 664
MboII	GAAGA	4 cut(s)	280, 358, 399, 481
MluCI	AATT	5 cut(s)	58, 145, 484, 617, 657
MnlI	CCTC	4 cut(s)	43, 46, 574, 652
MslI	CAYNNNNRTG	2 cut(s)	140, 320
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	3 cut(s)	13, 89, 239
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	115, 177, 208, 399
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	85, 124, 664
NlaIII	CATG	2 cut(s)	100, 319
NlaIV	GGNNCC	3 cut(s)	103, 243, 585
NmeAIII	GCCGAG	2 cut(s)	223, 571
NmuCI	GTSAC	2 cut(s)	473, 479
NspI	RCATGY	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	72, 117, 445
PpuMI	RGGWCCY	1 cut(s)	583
PsiI	TTATAA	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	103, 243, 585
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	637
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	140, 320
SalI	GTCGAC	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	341
SatI	GCNGC	3 cut(s)	71, 116, 444
Sau3AI	GATC	3 cut(s)	85, 124, 664
Sau96I	GGNCC	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	6 cut(s)	173, 195, 209, 237, 263, 614
SfaNI	GCATC	2 cut(s)	55, 496
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	140, 320
SmlI	CTYRAG	3 cut(s)	185, 447, 457
SmoI	CTYRAG	3 cut(s)	185, 447, 457
Sse9I	AATT	5 cut(s)	58, 145, 484, 617, 657
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	70, 116
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	2 cut(s)	50, 560
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	213, 511
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	4 cut(s)	56, 138, 517, 570
TasI	AATT	5 cut(s)	58, 145, 484, 617, 657
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	2 cut(s)	73, 118
TfiI	GAWTC	1 cut(s)	353
TseFI	GTSAC	2 cut(s)	473, 479
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	473, 479
Tth111I	GACNNNGTC	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	58, 145
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	517
XspI	CTAG	2 cut(s)	50, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.