Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015060.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

55799 .. 59678

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015060.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgtgtgggtggaatggaataaaaggatatttgaggaagctaggtgtgacttgtcaggaggtgtcttccaggaatagggttcaattttgggcatctctttggcgtcaatttcttcagggtttagagattgctcgtttcaacattctttatgacagggaacctgtatcgaaggcagcaggtgcacacacagatgctgcagtggagaaaataaatcatgaacctactccagacttgcttgacttcacaggtgcttcaaaaacacctgaaattatgggattatatgcagacactcctgtcagtgggttcagtagcagtgttgggaaccctgtgttggctaatagggatgactttgcatctgagttatcaaatgatacaaggacttctcaagttggggtatcacaatcgaataagggtcctaaccctaaagattcatttgaaaaggatgcacttgtaaggcagatgggcgttacccccacaagtcagaaccccaacttgtttagagatttgcttggcaactttacagtgccggagggtcagataagacgctgtgatctaaattgggagtgtgatctggatttctacaaacagtggattgcttattttctctgcgttcgtttaaggaggattgagaggtttttgttgcatcttttgcattggttgggttatagtttgaaaaagggtgagcgtatttgtcagtttttgattatctgtggacgaattttgagggatctttcaacaggagaagggagagacagaaacactgacagcgaagtagaggtcgatagcaaggtttggatccggtttgggagggatctttcagcaggagaagagatatcgggaacagcgtgcaatcaaattttcaaactgttttcaatttcgagatggcaagtgaaagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

299

Amino Acids

33.95

Weight (kDa)

8.09

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	167
AclWI	GGATC	4 cut(s)	735, 790, 803, 819
AcsI	RAATTY	2 cut(s)	717, 855
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	75, 299, 331
AgsI	TTSAA	8 cut(s)	83, 139, 255, 437, 673, 735, 862, 873
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	744
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	4 cut(s)	735, 790, 803, 819
AlwNI	CAGNNNCTG	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	173, 194
ApoI	RAATTY	2 cut(s)	717, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	181, 185
BccI	CCATC	2 cut(s)	454, 876
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	744
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	174, 195
BlsI	GCNGC	2 cut(s)	175, 196
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	4 cut(s)	159, 323, 414, 797
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	5 cut(s)	101, 181, 362, 433, 652
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 299, 331
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	349, 448
BseLI	CCNNNNNNNGG	3 cut(s)	75, 299, 331
BseMII	CTCAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	181, 185
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	527, 799
BslI	CCNNNNNNNGG	3 cut(s)	75, 299, 331
BsmAI	GTCTC	1 cut(s)	744
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	550, 568, 727, 795, 811
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	4 cut(s)	159, 323, 414, 797
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	4 cut(s)	735, 790, 803, 819
BssMI	GATC	5 cut(s)	550, 568, 727, 795, 811
BssNI	GRCGYC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	523, 588, 867
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	103
BstAPI	GCANNNNNTGC	2 cut(s)	179, 649
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	349, 448
BstKTI	GATC	5 cut(s)	553, 571, 730, 798, 814
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	5 cut(s)	550, 568, 727, 795, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 649
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	181, 185
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	3 cut(s)	727, 795, 811
BstYI	RGATCY	3 cut(s)	727, 795, 811
BtsCI	GGATG	2 cut(s)	349, 448
BtsI	GCAGTG	2 cut(s)	204, 319
BtsIMutI	CAGTG	6 cut(s)	204, 304, 319, 528, 593, 759
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	847
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	2 cut(s)	92, 552
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	2 cut(s)	40, 335
CviKI_1	RGCY	2 cut(s)	40, 335
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	5 cut(s)	552, 570, 729, 797, 813
DpnII	GATC	5 cut(s)	550, 568, 727, 795, 811
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	834
FaeI	CATG	1 cut(s)	218
FaiI	YATR	6 cut(s)	150, 216, 272, 280, 282, 666
FatI	CATG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	174, 195
FokI	GGATG	2 cut(s)	356, 455
Fsp4HI	GCNGC	2 cut(s)	174, 195
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	2 cut(s)	174, 195
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	2 cut(s)	527, 799
HgaI	GACGC	2 cut(s)	92, 552
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	2 cut(s)	527, 799
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	2 cut(s)	182, 713
Hpy188I	TCNGA	3 cut(s)	358, 483, 537
Hpy188III	TCNNGA	6 cut(s)	56, 215, 227, 572, 837, 879
Hpy8I	GTNNAC	2 cut(s)	182, 713
HpyAV	CCTTC	2 cut(s)	163, 737
HpyCH4III	ACNGT	3 cut(s)	523, 588, 867
HpyCH4V	TGCA	8 cut(s)	182, 197, 284, 353, 446, 643, 652, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 649
HpyF3I	CTNAG	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	5 cut(s)	550, 568, 727, 795, 811
Lsp1109I	GCAGC	2 cut(s)	181, 185
LweI	GCATC	5 cut(s)	101, 181, 362, 433, 652
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	46, 466
MalI	GATC	5 cut(s)	552, 570, 729, 797, 813
MboI	GATC	5 cut(s)	550, 568, 727, 795, 811
MboII	GAAGA	3 cut(s)	57, 104, 839
MflI	RGATCY	3 cut(s)	727, 795, 811
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	7 cut(s)	83, 107, 267, 556, 717, 855, 873
MnlI	CCTC	8 cut(s)	27, 52, 523, 615, 624, 717, 769, 801
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	2 cut(s)	527, 799
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	179, 649
NdeII	GATC	5 cut(s)	550, 568, 727, 795, 811
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	4 cut(s)	159, 323, 414, 797
NmuCI	GTSAC	1 cut(s)	46
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PfeI	GAWTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	175, 196
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	4 cut(s)	159, 323, 414, 797
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	3 cut(s)	727, 795, 811
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	2 cut(s)	174, 195
Sau3AI	GATC	5 cut(s)	550, 568, 727, 795, 811
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	5 cut(s)	101, 181, 362, 433, 652
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	7 cut(s)	83, 107, 267, 556, 717, 855, 873
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	523, 588, 867
TaqI	TCGA	4 cut(s)	167, 404, 780, 878
TasI	AATT	7 cut(s)	83, 107, 267, 556, 717, 855, 873
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	6 cut(s)	204, 304, 319, 528, 593, 766
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	173, 194
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	231, 420
TspRI	CASTG	6 cut(s)	204, 304, 319, 528, 593, 766
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	717, 855
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.