Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

31191644 .. 31202965

Gene Structure 11322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCCATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAGCGCATCGTCCTCCACGAGATCGAAACCCTAAAACGACGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGCCACGACGCGTCGTTCGCTTACATCCACGCCGTGAAGATGACGCACGACGACAATCTCGTCCTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACGACCTCATCATTCTCATCGTCAACACCATCCAGAAGGACCTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACCGTGCCCGCCGTTTTGCCCCAGGTCGTGGAGCTCCTAGGGCACCAGAAGGAGGCGGTGAGGAAGAAGGCGATCATGGCTCTTCATCGGTTTTATCAGAAGTCGCCGTCGTCGGTTTCGCATCTGGTGTCCAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTCATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCAAGTTGCAGAGCGTAGGTTGCCCAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGATTAGGTTGTTGAAGATTTTGGCATTGTTGGGGAGCGGGGATAAGCAATCGAGTGAGAAGATGTATATGGTAGTTGGCGACATATTTAAGAAGTGCGATTCCACGAGTAATATAGGAAATGCAGTTCTTTATGAGTGTATTTGTTGCGTTTCTGCAATACATCCTAATCCAAAATTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATTGATGCTCTTGGTCGACTGATAAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCGGATGATACTTTGAAGCGAAAAACATTTGAACTGTTATACAAGATGACAAAGTCCTCCAATGTGGAGGTGATTGTTGACCGTATGATTGATTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGATGTGTGGAGCTTGCTGAGCAATTTGCTCCGAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTCGAACATGCGGGAGATTTGGTGAATGTTAAGGTGGCACATAACTTGATGAAATTGATCGCCGAGGGATTTGGAGAGGATGATGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGGTCATTTGTTGGGTTTTGGGGGAATATGGAACTGCTGATGGAAAGTATTCTGCTTCGTATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATCATGAAAATATATGCATTTGAAATATCATCTGGAAGAAAAGTGGATATGCTATCTGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCGTGCGTATGAATTGCAAGCTGTCATTGGCATAGATGCTCATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTCATTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCATATATTTCTGAGAATGAGCGCTCTGGAATGTCAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCAAAGCCACTGGTGCCATCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTGCATCATTGCCATCTGTGTCAGATGCAGGATCGTCAGAACTTAAATTACGACTTGACGGTGTTCAAAAGAAATGGGGTAGGCCTACATACTCATCTTCTGCATCTTCGACCTCAACTTCTAGTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTTTTTGGCGGTTCATCAAGAACCGAGAAGAGGCCATCTTCGGGCAACCATAAAGTGTCCAAGGCCACCGAGAAGTCGCAGGTATCGAAGGCAGCAGGTGCACACACTGACGCTGCAGTGGAGAAAACAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTGGTACTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAACCGAAGCTACATCAACTGTGAATAATGGTCCAGCAGGTGCTTCAAAAACACCTGAAATTATGGGATTATATGCTGATACTCCTGTCAGTGGGCTCAGTAGCAGTGTTGGCAACCCTGTGTTGACCAATAGGGAAGACTTTAATCTTGCATCTGAGTTATCAAATGCTACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAGGGGTCCTAACCCTAAAGATTCATTGGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACCCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

973

Amino Acids

107.13

Weight (kDa)

5.72

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 593	2e-84	Adaptin N terminal region
Cnd1	PF12717	140 - 299	5.4e-06	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2462, 2636
AasI	GACNNNNNNGTC	2 cut(s)	296, 2116
Acc16I	TGCGCA	1 cut(s)	1463
Acc36I	ACCTGC	4 cut(s)	2263, 2446, 2462, 2636
AccB1I	GGYRCC	2 cut(s)	501, 2029
AccB7I	CCANNNNNTGG	2 cut(s)	487, 2590
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	222, 1051
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	2 cut(s)	597, 1069
AclWI	GGATC	5 cut(s)	102, 614, 2158, 2273, 2570
AcoI	YGGCCR	4 cut(s)	22, 58, 238, 2367
AcsI	RAATTY	2 cut(s)	2296, 2343
AcuI	CTGAAG	4 cut(s)	413, 740, 1484, 2521
AcvI	CACGTG	1 cut(s)	2309
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	2 cut(s)	271, 645
AfaI	GTAC	3 cut(s)	206, 2290, 2560
AfeI	AGCGCT	1 cut(s)	1928
AfiI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2406, 2417, 2590, 2699
AflIII	ACRYGT	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	480, 622
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
Alw21I	GWGCWC	4 cut(s)	33, 495, 1903, 2479
Alw26I	GTCTC	3 cut(s)	331, 452, 2102
Alw44I	GTGCAC	1 cut(s)	2475
AlwI	GGATC	5 cut(s)	102, 614, 2158, 2273, 2570
AlwNI	CAGNNNCTG	1 cut(s)	2087
Aor13HI	TCCGGA	2 cut(s)	597, 1069
Aor51HI	AGCGCT	1 cut(s)	1928
AoxI	GGCC	9 cut(s)	22, 58, 114, 238, 2004, 2201, 2367, 2408, 2439
ApaLI	GTGCAC	1 cut(s)	2475
ApeKI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2468, 2489
ApoI	RAATTY	2 cut(s)	2296, 2343
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1472, 1504
Asp700I	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
AspS9I	GGNCC	4 cut(s)	388, 1117, 2639, 2819
AsuC2I	CCSGG	2 cut(s)	26, 1121
AsuHPI	GGTGA	3 cut(s)	529, 1201, 1363
AsuII	TTCGAA	1 cut(s)	1332
AvaII	GGWCC	4 cut(s)	388, 1117, 2639, 2819
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	4 cut(s)	468, 504, 650, 2479
BaeI	ACNNNNGTAYC	2 cut(s)	2679, 2712
BalI	TGGCCA	1 cut(s)	2369
BanI	GGYRCC	2 cut(s)	501, 2029
BanII	GRGCYC	4 cut(s)	33, 44, 495, 2706
BauI	CACGAG	2 cut(s)	140, 892
BbrPI	CACGTG	1 cut(s)	2309
BbsI	GAAGAC	4 cut(s)	1321, 1839, 1985, 2751
Bbv12I	GWGCWC	4 cut(s)	33, 495, 1903, 2479
BbvI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
BceAI	ACGGC	5 cut(s)	254, 308, 419, 455, 550
BciT130I	CCWGG	2 cut(s)	482, 624
BclI	TGATCA	1 cut(s)	2605
BcnI	CCSGG	2 cut(s)	26, 1121
BcoDI	GTCTC	3 cut(s)	331, 452, 2102
BfaI	CTAG	4 cut(s)	497, 2103, 2241, 2920
BfmI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
BfoI	RGCGCY	2 cut(s)	779, 1930
BfuAI	ACCTGC	4 cut(s)	2263, 2446, 2462, 2636
BglII	AGATCT	1 cut(s)	1741
BisI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2469, 2490
BlnI	CCTAGG	1 cut(s)	496
BlpI	GCTNAGC	3 cut(s)	1080, 1278, 1902
BlsI	GCNGC	8 cut(s)	9, 53, 606, 979, 1752, 2053, 2470, 2491
BmcAI	AGTACT	1 cut(s)	2290
Bme1390I	CCNGG	4 cut(s)	26, 482, 624, 1121
Bme18I	GGWCC	4 cut(s)	388, 1117, 2639, 2819
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	4 cut(s)	388, 1117, 2639, 2819
BmiI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
BmrFI	CCNGG	4 cut(s)	26, 482, 624, 1121
BmrI	ACTGGG	1 cut(s)	1578
BmuI	ACTGGG	1 cut(s)	1578
BpiI	GAAGAC	4 cut(s)	1321, 1839, 1985, 2751
BpmI	CTGGAG	5 cut(s)	645, 1730, 2031, 2334, 2505
Bpu1102I	GCTNAGC	3 cut(s)	1080, 1278, 1902
Bpu14I	TTCGAA	1 cut(s)	1332
BpuEI	CTTGAG	5 cut(s)	287, 966, 976, 2344, 2775
BpuMI	CCSGG	2 cut(s)	26, 1121
Bsa29I	ATCGAT	2 cut(s)	672, 1845
BsaAI	YACGTR	2 cut(s)	684, 2309
BsaBI	GATNNNNATC	2 cut(s)	618, 1061
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BsaWI	WCCGGW	2 cut(s)	597, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	1335, 1365
Bsc4I	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2406, 2417, 2590, 2699
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2370, 2560
Bse3DI	GCAATG	1 cut(s)	2126
Bse8I	GATNNNNATC	2 cut(s)	618, 1061
BseAI	TCCGGA	2 cut(s)	597, 1069
BseBI	CCWGG	2 cut(s)	482, 624
BseCI	ATCGAT	2 cut(s)	672, 1845
BseDI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BseGI	GGATG	9 cut(s)	180, 210, 261, 378, 949, 1129, 1414, 2060, 2854
BseJI	GATNNNNATC	2 cut(s)	618, 1061
BseLI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2406, 2417, 2590, 2699
BseMI	GCAATG	1 cut(s)	2126
BseMII	CTCAG	7 cut(s)	1071, 1269, 1686, 1908, 1916, 2719, 2754
BseNI	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2370, 2560
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	4 cut(s)	468, 504, 650, 2479
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BshNI	GGYRCC	2 cut(s)	501, 2029
BshVI	ATCGAT	2 cut(s)	672, 1845
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	4 cut(s)	33, 495, 1903, 2479
BsiSI	CCGG	5 cut(s)	25, 312, 598, 1070, 1121
BslI	CCNNNNNNNGG	9 cut(s)	24, 67, 487, 511, 597, 2406, 2417, 2590, 2699
BsmAI	GTCTC	3 cut(s)	331, 452, 2102
BsmBI	CGTCTC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
Bso31I	GGTCTC	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	1332
Bsp1286I	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2479, 2706
Bsp13I	TCCGGA	2 cut(s)	597, 1069
Bsp1720I	GCTNAGC	3 cut(s)	1080, 1278, 1902
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BspCNI	CTCAG	7 cut(s)	1072, 1270, 1687, 1909, 1915, 2718, 2755
BspDI	ATCGAT	2 cut(s)	672, 1845
BspEI	TCCGGA	2 cut(s)	597, 1069
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	2 cut(s)	1641, 2509
BspLI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
BspMAI	CTGCAG	3 cut(s)	1423, 2056, 2494
BspMI	ACCTGC	4 cut(s)	2263, 2446, 2462, 2636
BspPI	GGATC	5 cut(s)	102, 614, 2158, 2273, 2570
BspQI	GCTCTTC	2 cut(s)	338, 546
BspT104I	TTCGAA	1 cut(s)	1332
BspT107I	GGYRCC	2 cut(s)	501, 2029
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	2126
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	7 cut(s)	1090, 1573, 2031, 2081, 2116, 2370, 2560
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	2 cut(s)	140, 892
BssT1I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Bst2BI	CACGAG	2 cut(s)	140, 892
Bst2UI	CCWGG	2 cut(s)	482, 624
Bst4CI	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2551, 2629
Bst6I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	2474
BstBAI	YACGTR	2 cut(s)	684, 2309
BstBI	TTCGAA	1 cut(s)	1332
BstC8I	GCNNGC	6 cut(s)	33, 443, 468, 1275, 1755, 1770
BstDEI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2705, 2763
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	9 cut(s)	180, 210, 261, 378, 949, 1129, 1414, 2060, 2854
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	779, 1930
BstHHI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
BstMAI	GTCTC	3 cut(s)	331, 452, 2102
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	482, 624
BstNSI	RCATGY	1 cut(s)	1340
BstSCI	CCNGG	4 cut(s)	24, 480, 622, 1119
BstSFI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
BstSLI	GKGCMC	4 cut(s)	468, 504, 650, 2479
BstSNI	TACGTA	1 cut(s)	684
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
BstV2I	GAAGAC	4 cut(s)	1321, 1839, 1985, 2751
BstX2I	RGATCY	2 cut(s)	1741, 2575
BstYI	RGATCY	2 cut(s)	1741, 2575
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	2 cut(s)	672, 1845
BsuRI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BsuTUI	ATCGAT	2 cut(s)	672, 1845
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	9 cut(s)	180, 210, 261, 378, 949, 1129, 1414, 2060, 2854
BtsI	GCAGTG	2 cut(s)	2499, 2719
BtsIMutI	CAGTG	8 cut(s)	1566, 2024, 2088, 2481, 2499, 2545, 2704, 2719
BveI	ACCTGC	4 cut(s)	2263, 2446, 2462, 2636
Cac8I	GCNNGC	6 cut(s)	33, 443, 468, 1275, 1755, 1770
CaiI	CAGNNNCTG	1 cut(s)	2087
CciI	TCATGA	2 cut(s)	1641, 2509
CfoI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	4 cut(s)	388, 1117, 2639, 2819
ClaI	ATCGAT	2 cut(s)	672, 1845
CseI	GACGC	5 cut(s)	171, 237, 254, 289, 2495
Csp6I	GTAC	3 cut(s)	205, 2289, 2559
CviQI	GTAC	3 cut(s)	205, 2289, 2559
DdeI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2705, 2763
DraIII	CACNNNGTG	2 cut(s)	271, 645
DrdI	GACNNNNNNGTC	2 cut(s)	296, 2116
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	2 cut(s)	296, 2116
EaeI	YGGCCR	4 cut(s)	22, 58, 238, 2367
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	2 cut(s)	31, 493
EclXI	CGGCCG	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Eco147I	AGGCCT	2 cut(s)	2006, 2203
Eco24I	GRGCYC	4 cut(s)	33, 44, 495, 2706
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	4 cut(s)	388, 1117, 2639, 2819
Eco47III	AGCGCT	1 cut(s)	1928
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	31, 493
Eco57I	CTGAAG	4 cut(s)	413, 740, 1484, 2521
Eco72I	CACGTG	1 cut(s)	2309
EcoICRI	GAGCTC	2 cut(s)	31, 493
EcoO109I	RGGNCCY	3 cut(s)	388, 1117, 2819
EcoRII	CCWGG	2 cut(s)	480, 622
EcoT14I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
EcoT22I	ATGCAT	1 cut(s)	1657
EcoT38I	GRGCYC	4 cut(s)	33, 44, 495, 2706
ErhI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Esp3I	CGTCTC	1 cut(s)	331
FalI	AAGNNNNNCTT	2 cut(s)	2586, 2618
FauI	CCCGC	3 cut(s)	475, 818, 1333
FbaI	TGATCA	1 cut(s)	2605
FblI	GTMKAC	2 cut(s)	222, 1051
Fnu4HI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2469, 2490
FokI	GGATG	9 cut(s)	167, 197, 248, 365, 936, 1136, 1421, 2047, 2861
FriOI	GRGCYC	4 cut(s)	33, 44, 495, 2706
Fsp4HI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2469, 2490
FspBI	CTAG	4 cut(s)	497, 2103, 2241, 2920
FspI	TGCGCA	1 cut(s)	1463
GlaI	GCGC	6 cut(s)	128, 191, 308, 777, 1463, 1928
GluI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2469, 2490
GsuI	CTGGAG	5 cut(s)	645, 1730, 2031, 2334, 2505
HaeII	RGCGCY	2 cut(s)	779, 1930
HaeIII	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
HapII	CCGG	5 cut(s)	25, 312, 598, 1070, 1121
HgaI	GACGC	5 cut(s)	171, 237, 254, 289, 2495
HhaI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Hin1I	GRCGYC	1 cut(s)	163
Hin6I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HinP1I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HincII	GTYRAC	4 cut(s)	373, 1052, 1198, 2733
HindII	GTYRAC	4 cut(s)	373, 1052, 1198, 2733
HindIII	AAGCTT	2 cut(s)	1481, 1977
HinfI	GANTC	5 cut(s)	627, 887, 1451, 2543, 2834
HpaII	CCGG	5 cut(s)	25, 312, 598, 1070, 1121
HphI	GGTGA	3 cut(s)	529, 1201, 1363
Hpy166II	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2375, 2477, 2733
Hpy8I	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2375, 2477, 2733
HpyAV	CCTTC	6 cut(s)	193, 379, 502, 520, 2458, 2588
HpyCH4III	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2551, 2629
HpyCH4IV	ACGT	3 cut(s)	225, 683, 2308
HpyF3I	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2705, 2763
HpySE526I	ACGT	3 cut(s)	225, 683, 2308
Hsp92I	GRCGYC	1 cut(s)	163
HspAI	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
Kpn2I	TCCGGA	2 cut(s)	597, 1069
Ksp22I	TGATCA	1 cut(s)	2605
LguI	GCTCTTC	2 cut(s)	338, 546
Lsp1109I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
MaeI	CTAG	4 cut(s)	497, 2103, 2241, 2920
MaeII	ACGT	3 cut(s)	225, 683, 2308
MaeIII	GTNAC	5 cut(s)	1007, 1630, 1985, 2551, 2872
MbiI	CCGCTC	1 cut(s)	825
MflI	RGATCY	2 cut(s)	1741, 2575
MhlI	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2479, 2706
MlsI	TGGCCA	1 cut(s)	2369
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	2369
MlyI	GAGTC	2 cut(s)	636, 1460
MmeI	TCCRAC	2 cut(s)	1903, 2571
Mox20I	TGGCCA	1 cut(s)	2369
Mph1103I	ATGCAT	1 cut(s)	1657
MroI	TCCGGA	2 cut(s)	597, 1069
MroXI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
MscI	TGGCCA	1 cut(s)	2369
MseI	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2751
MslI	CAYNNNNRTG	2 cut(s)	674, 1261
Msp20I	TGGCCA	1 cut(s)	2369
MspA1I	CMGCKG	1 cut(s)	2051
MspI	CCGG	5 cut(s)	25, 312, 598, 1070, 1121
MspR9I	CCNGG	4 cut(s)	26, 482, 624, 1121
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	482, 624
MvnI	CGCG	1 cut(s)	248
NciI	CCSGG	2 cut(s)	26, 1121
NcoI	CCATGG	1 cut(s)	36
NlaIV	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
NmeAIII	GCCGAG	2 cut(s)	216, 1417
NmuCI	GTSAC	2 cut(s)	1007, 1985
NsbI	TGCGCA	1 cut(s)	1463
NsiI	ATGCAT	1 cut(s)	1657
NspI	RCATGY	1 cut(s)	1340
NspV	TTCGAA	1 cut(s)	1332
PagI	TCATGA	2 cut(s)	1641, 2509
PaqCI	CACCTGC	2 cut(s)	2462, 2636
PceI	AGGCCT	2 cut(s)	2006, 2203
PciSI	GCTCTTC	2 cut(s)	338, 546
PcsI	WCGNNNNNNNCGW	7 cut(s)	138, 225, 294, 348, 459, 647, 2459
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
PfeI	GAWTC	3 cut(s)	887, 2543, 2834
PflFI	GACNNNGTC	2 cut(s)	83, 1171
PflMI	CCANNNNNTGG	2 cut(s)	487, 2590
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	8 cut(s)	9, 53, 606, 979, 1752, 2053, 2470, 2491
PleI	GAGTC	2 cut(s)	635, 1459
PmaCI	CACGTG	1 cut(s)	2309
PmlI	CACGTG	1 cut(s)	2309
PpsI	GAGTC	2 cut(s)	635, 1459
Ppu21I	YACGTR	2 cut(s)	684, 2309
PpuMI	RGGWCCY	3 cut(s)	388, 1117, 2819
Psp124BI	GAGCTC	2 cut(s)	33, 495
Psp5II	RGGWCCY	3 cut(s)	388, 1117, 2819
Psp6I	CCWGG	2 cut(s)	480, 622
PspCI	CACGTG	1 cut(s)	2309
PspGI	CCWGG	2 cut(s)	480, 622
PspN4I	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
PspPI	GGNCC	4 cut(s)	388, 1117, 2639, 2819
PspPPI	RGGWCCY	3 cut(s)	388, 1117, 2819
PsrI	GAACNNNNNNTAC	2 cut(s)	2151, 2183
PstI	CTGCAG	3 cut(s)	1423, 2056, 2494
PstNI	CAGNNNCTG	1 cut(s)	2087
PsuI	RGATCY	2 cut(s)	1741, 2575
PsyI	GACNNNGTC	2 cut(s)	83, 1171
PvuII	CAGCTG	1 cut(s)	2051
RsaI	GTAC	3 cut(s)	206, 2290, 2560
RsaNI	GTAC	3 cut(s)	205, 2289, 2559
RseI	CAYNNNNRTG	2 cut(s)	674, 1261
SacI	GAGCTC	2 cut(s)	33, 495
SalI	GTCGAC	1 cut(s)	1050
SapI	GCTCTTC	2 cut(s)	338, 546
SaqAI	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2751
SatI	GCNGC	8 cut(s)	8, 52, 605, 978, 1751, 2052, 2469, 2490
Sau96I	GGNCC	4 cut(s)	388, 1117, 2639, 2819
ScaI	AGTACT	1 cut(s)	2290
SchI	GAGTC	2 cut(s)	636, 1460
ScrFI	CCNGG	4 cut(s)	26, 482, 624, 1121
SduI	GDGCHC	9 cut(s)	33, 44, 468, 495, 504, 650, 1903, 2479, 2706
SfcI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
SfuI	TTCGAA	1 cut(s)	1332
SinI	GGWCC	4 cut(s)	388, 1117, 2639, 2819
SmiMI	CAYNNNNRTG	2 cut(s)	674, 1261
SmlI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2323, 2790
SmoI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2323, 2790
SnaBI	TACGTA	1 cut(s)	684
SseBI	AGGCCT	2 cut(s)	2006, 2203
SspMI	CTAG	4 cut(s)	497, 2103, 2241, 2920
SstI	GAGCTC	2 cut(s)	33, 495
StuI	AGGCCT	2 cut(s)	2006, 2203
StyD4I	CCNGG	4 cut(s)	24, 480, 622, 1119
StyI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
TaaI	ACNGT	9 cut(s)	463, 1013, 1155, 1202, 1615, 1991, 2180, 2551, 2629
TaiI	ACGT	3 cut(s)	228, 686, 2311
TatI	WGTACW	2 cut(s)	204, 2288
TauI	GCSGC	2 cut(s)	54, 607
TfiI	GAWTC	3 cut(s)	887, 2543, 2834
Tru1I	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2751
Tru9I	TTAA	7 cut(s)	876, 1227, 1359, 1947, 1982, 2163, 2751
TscAI	CASTG	8 cut(s)	1573, 2031, 2088, 2488, 2499, 2545, 2704, 2719
TseFI	GTSAC	2 cut(s)	1007, 1985
TseI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2468, 2489
Tsp45I	GTSAC	2 cut(s)	1007, 1985
TspGWI	ACGGA	2 cut(s)	1476, 2556
TspRI	CASTG	8 cut(s)	1573, 2031, 2088, 2488, 2499, 2545, 2704, 2719
Tth111I	GACNNNGTC	2 cut(s)	83, 1171
Van91I	CCANNNNNTGG	2 cut(s)	487, 2590
VneI	GTGCAC	1 cut(s)	2475
VpaK11BI	GGWCC	4 cut(s)	388, 1117, 2639, 2819
XapI	RAATTY	2 cut(s)	2296, 2343
XceI	RCATGY	1 cut(s)	1340
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	222, 1051
XmnI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
XspI	CTAG	4 cut(s)	497, 2103, 2241, 2920
ZrmI	AGTACT	1 cut(s)	2290
Zsp2I	ATGCAT	1 cut(s)	1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.