Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

53681303 .. 53684366

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCAACACATAGTTGCTTTAGGAAAAGCTCCATCTGATGCGCCCAGAGAGGGTAGTTCTTCCCATAGAAACGGACAGGAATGTATTCATCTTGCGTCTCTGGATAATTGTGTTTGGGTAGGTGATCTGCTGCAACTGGACCAATCGTGCTTGGGTTTTGAGGATAATCGTGCTAGATCAACCAGGGTCCCAGAAGTGCTAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

5.43

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	139, 187
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	139, 187
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	174, 200
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	139, 187
BmgT120I	GGNCC	2 cut(s)	139, 187
BmiI	GGNNCC	2 cut(s)	188, 189
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	124, 176
BspLI	GGNNCC	2 cut(s)	188, 189
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	124, 176
Bst2UI	CCWGG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	127, 179
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	124, 176
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	139, 187
CseI	GACGC	1 cut(s)	84
CviJI	RGCY	1 cut(s)	29
CviKI_1	RGCY	1 cut(s)	29
DpnI	GATC	2 cut(s)	126, 178
DpnII	GATC	2 cut(s)	124, 176
Eco47I	GGWCC	2 cut(s)	139, 187
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	102
FaiI	YATR	2 cut(s)	11, 66
FaqI	GGGAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	174, 200
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	4, 133
HspAI	GCGC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	124, 176
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	58, 62, 86, 122, 169, 196, 204
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	174, 200
MalI	GATC	2 cut(s)	126, 178
MboI	GATC	2 cut(s)	124, 176
MboII	GAAGA	1 cut(s)	51
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	2 cut(s)	43, 154
MroXI	GAANNNNTTC	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	124, 176
NlaIV	GGNNCC	2 cut(s)	188, 189
PdmI	GAANNNNTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	188, 189
PspPI	GGNCC	2 cut(s)	139, 187
PspPPI	RGGWCCY	1 cut(s)	187
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	124, 176
Sau96I	GGNCC	2 cut(s)	139, 187
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	2 cut(s)	31, 124
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	2 cut(s)	139, 187
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	2 cut(s)	174, 200
StyD4I	CCNGG	1 cut(s)	182
TasI	AATT	1 cut(s)	106
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	87
VpaK11BI	GGWCC	2 cut(s)	139, 187
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	2 cut(s)	174, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.