Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

37837154 .. 37847120

Gene Structure 9967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGGAGCAGCTCAAGACGATCGGCCGGGAGCTCGCCATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAGCGCATCGTCCTCCACGAGATCGAAACCCTAAAACGCCGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGCCACGACGCGTCGTTCGCTTACATCCACGCCGTGAAGATGACGCACGACGACAATCTCGTCCTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACGACCTCATCATCCTTATCGTCAACACCATCCAGAAGGACTTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACTGTTCCCGCCGTTTTGCCCCAGGTCGTGGAGCTCCTAGGGCACCAGAAGGAGGCGGTGAGGAAGAAGGCGATCATGGCTCTTCATCGGTTTTATCAGAAGTCGCCGTCGTCGGTTTCGCATCTGGTGTCCAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTCATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATTGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCAAGTTGCAGAGCGTAGGTTGCCCAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGATCAGGTTGTTGAAGATTTTGGCATTGTTGGGGAGCGGGGATAAGCAATCGAGTGAGAAGATGTATATGGTAGTCGGCGACATATTTAAGAAGTGCGATTCCACGAGTAATATAGGAAATGCAGTTCTTTATGAGTGTATTTGTTGCGTTTCTGCAATATATCCTAATCCGAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATTGATGCTCTTGGTCGACTCATAAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTTTGAAGCGAAAAACATTTGAACTTTTATACAAGATGACCAAGTCCTCCAATGTGGAGGTTATTGTTGACCGTATGATTGATTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGGTGCGTGGAGCTTGCTGAGCAATTTGCTCCAAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAACATGCGGGAGATTTGGTGAATGTTAAGGTGGCACATAACTTGATGAAATTGATCGCCGAGGGATTTGGAGAGGATGACGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGGTTATTTGTTGGGTTTTGGGGGAATATGGAACTGCTGATGGAAAGTATTCTGCTTCATATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATCATGAAAATATATGCATTTGAAATATCAGCTGGAAGAAAAGTGGATATGCTACCTGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCGTGCATATGAATTGCAAGCTGTCATTGGCATAGATGCTCATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTCATTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCATATATTTCTGAGAATGAGCGCTCTGGAATGTCAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCACAGCCACTGGTGCCATCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTGCATCATTGCCATCTGTGTCAGATGCAGGATCGTCAGAACTTAAATTACGACTTGACGGTGTTCAAAAGAAATGGGGTAGGCCTACATATTCATCTTCTGCATCTTCGACCTCAACTTCTAGTTCCCACAAAACGACAAATGGGGTCACACAGGTAGATGGTGTGAGTACTTCAAATTCAAAAGCACATGATACTTATGACTTGAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTCTTTGGCGGTTCATCAAGAACTGAGAAGAGGCCATCTTCGGGCAACCATAAAGTGTCCAAGGCCGCCGAGAAGTCACAGGTATCGAAGGCAGCAGGTGCACACACTGACGCTGCAGTGGAGAAAACAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTAGTACTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAACCGAAGCTACATCAACTGTGAATAATGGTTCAGCAGGTGCTTCAAAAACATCTGAAATTATGGGATTATATGCTGATACTCCTGTCAGTGGGCTCAGTAGCAGTGTTGGCAACCCTGTGTTGACCAATAGGGATGACTTCAATCTTGCATCTGAATTATCAAATGCTACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAAGGGTCCTAACCCTAAAGATTCATTGGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACGCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

974

Amino Acids

107.05

Weight (kDa)

5.63

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 593	2.8e-84	Adaptin N terminal region
Cnd1	PF12717	140 - 299	5.4e-06	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2462, 2636
AasI	GACNNNNNNGTC	2 cut(s)	296, 2116
Acc16I	TGCGCA	1 cut(s)	1463
Acc36I	ACCTGC	2 cut(s)	2462, 2636
AccB1I	GGYRCC	2 cut(s)	501, 2029
AccB7I	CCANNNNNTGG	2 cut(s)	487, 2590
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	222, 1051
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	2 cut(s)	597, 1069
AclWI	GGATC	4 cut(s)	102, 614, 2158, 2570
AcoI	YGGCCR	4 cut(s)	22, 58, 238, 2367
AcsI	RAATTY	2 cut(s)	2296, 2343
AcuI	CTGAAG	3 cut(s)	740, 1484, 2521
AdeI	CACNNNGTG	2 cut(s)	271, 645
AfaI	GTAC	3 cut(s)	206, 2290, 2560
AfeI	AGCGCT	1 cut(s)	1928
AfiI	CCNNNNNNNGG	7 cut(s)	67, 487, 511, 597, 2417, 2590, 2699
AflIII	ACRYGT	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	2555
AjnI	CCWGG	2 cut(s)	480, 622
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
Alw21I	GWGCWC	4 cut(s)	33, 495, 1903, 2479
Alw26I	GTCTC	3 cut(s)	331, 452, 2102
Alw44I	GTGCAC	1 cut(s)	2475
AlwI	GGATC	4 cut(s)	102, 614, 2158, 2570
AlwNI	CAGNNNCTG	2 cut(s)	2026, 2087
Aor13HI	TCCGGA	2 cut(s)	597, 1069
Aor51HI	AGCGCT	1 cut(s)	1928
AoxI	GGCC	9 cut(s)	22, 58, 114, 238, 2004, 2201, 2367, 2408, 2439
ApaLI	GTGCAC	1 cut(s)	2475
ApeKI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2468, 2489
ApoI	RAATTY	2 cut(s)	2296, 2343
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1472, 1504
Asp700I	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
AspS9I	GGNCC	2 cut(s)	1117, 2819
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	529, 1363
AvaII	GGWCC	2 cut(s)	1117, 2819
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	3 cut(s)	504, 650, 2479
BaeI	ACNNNNGTAYC	2 cut(s)	2679, 2712
BalI	TGGCCA	1 cut(s)	2369
BanI	GGYRCC	2 cut(s)	501, 2029
BanII	GRGCYC	4 cut(s)	33, 44, 495, 2706
BauI	CACGAG	2 cut(s)	140, 892
BbsI	GAAGAC	2 cut(s)	1839, 1985
Bbv12I	GWGCWC	4 cut(s)	33, 495, 1903, 2479
BbvI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
BceAI	ACGGC	5 cut(s)	254, 308, 419, 455, 550
BciT130I	CCWGG	2 cut(s)	482, 624
BclI	TGATCA	1 cut(s)	2605
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	331, 452, 2102
BcuI	ACTAGT	1 cut(s)	2555
BfaI	CTAG	5 cut(s)	497, 2103, 2241, 2556, 2920
BfmI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
BfoI	RGCGCY	2 cut(s)	779, 1930
BfuAI	ACCTGC	2 cut(s)	2462, 2636
BglII	AGATCT	1 cut(s)	1741
BlnI	CCTAGG	1 cut(s)	496
BlpI	GCTNAGC	3 cut(s)	1080, 1278, 1902
BmcAI	AGTACT	2 cut(s)	2290, 2560
Bme1390I	CCNGG	3 cut(s)	26, 482, 624
Bme18I	GGWCC	2 cut(s)	1117, 2819
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	1117, 2819
BmiI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
BmrFI	CCNGG	3 cut(s)	26, 482, 624
BmrI	ACTGGG	1 cut(s)	1578
BmuI	ACTGGG	1 cut(s)	1578
BpiI	GAAGAC	2 cut(s)	1839, 1985
BpmI	CTGGAG	5 cut(s)	645, 1730, 2031, 2334, 2505
Bpu1102I	GCTNAGC	3 cut(s)	1080, 1278, 1902
BpuEI	CTTGAG	5 cut(s)	287, 966, 976, 2344, 2775
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	1845
BsaAI	YACGTR	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BsaWI	WCCGGW	2 cut(s)	597, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	1335, 1365
Bsc4I	CCNNNNNNNGG	7 cut(s)	67, 487, 511, 597, 2417, 2590, 2699
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	6 cut(s)	1090, 1573, 2031, 2081, 2116, 2370
Bse3DI	GCAATG	1 cut(s)	2126
Bse8I	GATNNNNATC	1 cut(s)	618
BseAI	TCCGGA	2 cut(s)	597, 1069
BseBI	CCWGG	2 cut(s)	482, 624
BseCI	ATCGAT	1 cut(s)	1845
BseDI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BseGI	GGATG	9 cut(s)	180, 210, 261, 360, 378, 1414, 2060, 2749, 2854
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	7 cut(s)	67, 487, 511, 597, 2417, 2590, 2699
BseMI	GCAATG	1 cut(s)	2126
BseMII	CTCAG	7 cut(s)	1071, 1269, 1686, 1908, 1916, 2391, 2719
BseNI	ACTGG	6 cut(s)	1090, 1573, 2031, 2081, 2116, 2370
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	3 cut(s)	504, 650, 2479
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	2 cut(s)	21, 25
BshFI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BshNI	GGYRCC	2 cut(s)	501, 2029
BshVI	ATCGAT	1 cut(s)	1845
BsiEI	CGRYCG	2 cut(s)	21, 25
BsiHKAI	GWGCWC	4 cut(s)	33, 495, 1903, 2479
BsiSI	CCGG	4 cut(s)	25, 312, 598, 1070
BslI	CCNNNNNNNGG	7 cut(s)	67, 487, 511, 597, 2417, 2590, 2699
BsmAI	GTCTC	3 cut(s)	331, 452, 2102
BsmBI	CGTCTC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
Bsp1286I	GDGCHC	8 cut(s)	33, 44, 495, 504, 650, 1903, 2479, 2706
Bsp13I	TCCGGA	2 cut(s)	597, 1069
Bsp1720I	GCTNAGC	3 cut(s)	1080, 1278, 1902
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BspCNI	CTCAG	7 cut(s)	1072, 1270, 1687, 1909, 1915, 2392, 2718
BspDI	ATCGAT	1 cut(s)	1845
BspEI	TCCGGA	2 cut(s)	597, 1069
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	2 cut(s)	1641, 2509
BspLI	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
BspMAI	CTGCAG	3 cut(s)	1423, 2056, 2494
BspMI	ACCTGC	2 cut(s)	2462, 2636
BspPI	GGATC	4 cut(s)	102, 614, 2158, 2570
BspQI	GCTCTTC	2 cut(s)	338, 546
BspT107I	GGYRCC	2 cut(s)	501, 2029
BsrBI	CCGCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	2126
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	6 cut(s)	1090, 1573, 2031, 2081, 2116, 2370
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	8 cut(s)	36, 46, 66, 111, 480, 496, 1392, 2436
BssSI	CACGAG	2 cut(s)	140, 892
BssT1I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Bst2BI	CACGAG	2 cut(s)	140, 892
Bst2UI	CCWGG	2 cut(s)	482, 624
Bst4CI	ACNGT	8 cut(s)	463, 1013, 1202, 1615, 1991, 2180, 2551, 2629
Bst6I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
BstAPI	GCANNNNNTGC	1 cut(s)	2474
BstBAI	YACGTR	1 cut(s)	684
BstC8I	GCNNGC	5 cut(s)	33, 443, 1275, 1755, 1770
BstDEI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2400, 2705
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	9 cut(s)	180, 210, 261, 360, 378, 1414, 2060, 2749, 2854
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	779, 1930
BstHHI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
BstMAI	GTCTC	3 cut(s)	331, 452, 2102
BstMCI	CGRYCG	2 cut(s)	21, 25
BstNI	CCWGG	2 cut(s)	482, 624
BstNSI	RCATGY	1 cut(s)	1340
BstSCI	CCNGG	3 cut(s)	24, 480, 622
BstSFI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
BstSLI	GKGCMC	3 cut(s)	504, 650, 2479
BstSNI	TACGTA	1 cut(s)	684
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
BstV2I	GAAGAC	2 cut(s)	1839, 1985
BstX2I	RGATCY	2 cut(s)	1741, 2575
BstYI	RGATCY	2 cut(s)	1741, 2575
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	1845
BsuRI	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
BsuTUI	ATCGAT	1 cut(s)	1845
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	9 cut(s)	180, 210, 261, 360, 378, 1414, 2060, 2749, 2854
BtsI	GCAGTG	2 cut(s)	2499, 2719
BtsIMutI	CAGTG	8 cut(s)	1566, 2024, 2088, 2481, 2499, 2545, 2704, 2719
BveI	ACCTGC	2 cut(s)	2462, 2636
Cac8I	GCNNGC	5 cut(s)	33, 443, 1275, 1755, 1770
CaiI	CAGNNNCTG	2 cut(s)	2026, 2087
CciI	TCATGA	2 cut(s)	1641, 2509
CfoI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	1117, 2819
ClaI	ATCGAT	1 cut(s)	1845
CseI	GACGC	4 cut(s)	237, 254, 289, 2495
Csp6I	GTAC	3 cut(s)	205, 2289, 2559
CviQI	GTAC	3 cut(s)	205, 2289, 2559
DdeI	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2400, 2705
DraIII	CACNNNGTG	2 cut(s)	271, 645
DrdI	GACNNNNNNGTC	2 cut(s)	296, 2116
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	2 cut(s)	296, 2116
EaeI	YGGCCR	4 cut(s)	22, 58, 238, 2367
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	5 cut(s)	114, 338, 546, 998, 2399
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	2 cut(s)	31, 493
EclXI	CGGCCG	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Eco147I	AGGCCT	2 cut(s)	2006, 2203
Eco24I	GRGCYC	4 cut(s)	33, 44, 495, 2706
Eco47I	GGWCC	2 cut(s)	1117, 2819
Eco47III	AGCGCT	1 cut(s)	1928
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	31, 493
Eco57I	CTGAAG	3 cut(s)	740, 1484, 2521
EcoICRI	GAGCTC	2 cut(s)	31, 493
EcoO109I	RGGNCCY	2 cut(s)	1117, 2819
EcoRII	CCWGG	2 cut(s)	480, 622
EcoT14I	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
EcoT22I	ATGCAT	1 cut(s)	1657
EcoT38I	GRGCYC	4 cut(s)	33, 44, 495, 2706
ErhI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
Esp3I	CGTCTC	1 cut(s)	331
FalI	AAGNNNNNCTT	2 cut(s)	2586, 2618
FauI	CCCGC	3 cut(s)	475, 818, 1333
FauNDI	CATATG	1 cut(s)	1759
FbaI	TGATCA	1 cut(s)	2605
FblI	GTMKAC	2 cut(s)	222, 1051
FokI	GGATG	9 cut(s)	167, 197, 248, 347, 365, 1421, 2047, 2756, 2861
FriOI	GRGCYC	4 cut(s)	33, 44, 495, 2706
FspBI	CTAG	5 cut(s)	497, 2103, 2241, 2556, 2920
FspI	TGCGCA	1 cut(s)	1463
GlaI	GCGC	6 cut(s)	128, 191, 308, 777, 1463, 1928
GsuI	CTGGAG	5 cut(s)	645, 1730, 2031, 2334, 2505
HaeII	RGCGCY	2 cut(s)	779, 1930
HaeIII	GGCC	9 cut(s)	24, 60, 116, 240, 2006, 2203, 2369, 2410, 2441
HapII	CCGG	4 cut(s)	25, 312, 598, 1070
HgaI	GACGC	4 cut(s)	237, 254, 289, 2495
HhaI	GCGC	6 cut(s)	129, 192, 309, 778, 1464, 1929
Hin6I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HinP1I	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
HincII	GTYRAC	4 cut(s)	373, 1052, 1198, 2733
HindII	GTYRAC	4 cut(s)	373, 1052, 1198, 2733
HindIII	AAGCTT	2 cut(s)	1481, 1977
HinfI	GANTC	6 cut(s)	627, 887, 1053, 1451, 2543, 2834
HpaII	CCGG	4 cut(s)	25, 312, 598, 1070
HphI	GGTGA	2 cut(s)	529, 1363
Hpy166II	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2375, 2477, 2733
Hpy8I	GTNNAC	7 cut(s)	223, 373, 1052, 1198, 2375, 2477, 2733
Hpy99I	CGWCG	9 cut(s)	230, 248, 253, 290, 347, 416, 458, 571, 574
HpyAV	CCTTC	6 cut(s)	193, 379, 502, 520, 2458, 2588
HpyCH4III	ACNGT	8 cut(s)	463, 1013, 1202, 1615, 1991, 2180, 2551, 2629
HpyCH4IV	ACGT	2 cut(s)	225, 683
HpyF3I	CTNAG	8 cut(s)	1080, 1111, 1278, 1695, 1902, 1917, 2400, 2705
HpySE526I	ACGT	2 cut(s)	225, 683
HspAI	GCGC	6 cut(s)	127, 190, 307, 776, 1462, 1927
Kpn2I	TCCGGA	2 cut(s)	597, 1069
Ksp22I	TGATCA	1 cut(s)	2605
LguI	GCTCTTC	2 cut(s)	338, 546
Lsp1109I	GCAGC	6 cut(s)	19, 964, 1762, 2038, 2476, 2480
MaeI	CTAG	5 cut(s)	497, 2103, 2241, 2556, 2920
MaeII	ACGT	2 cut(s)	225, 683
MaeIII	GTNAC	7 cut(s)	1007, 1630, 1985, 2266, 2451, 2551, 2872
MbiI	CCGCTC	1 cut(s)	825
MflI	RGATCY	2 cut(s)	1741, 2575
MhlI	GDGCHC	8 cut(s)	33, 44, 495, 504, 650, 1903, 2479, 2706
MlsI	TGGCCA	1 cut(s)	2369
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	2369
MlyI	GAGTC	3 cut(s)	636, 1047, 1460
MmeI	TCCRAC	2 cut(s)	1903, 2571
Mox20I	TGGCCA	1 cut(s)	2369
Mph1103I	ATGCAT	1 cut(s)	1657
MroI	TCCGGA	2 cut(s)	597, 1069
MroXI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
MscI	TGGCCA	1 cut(s)	2369
MseI	TTAA	6 cut(s)	876, 1227, 1359, 1947, 1982, 2163
MslI	CAYNNNNRTG	2 cut(s)	674, 1261
Msp20I	TGGCCA	1 cut(s)	2369
MspA1I	CMGCKG	2 cut(s)	1670, 2051
MspI	CCGG	4 cut(s)	25, 312, 598, 1070
MspR9I	CCNGG	3 cut(s)	26, 482, 624
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	482, 624
MvnI	CGCG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	1759
NlaIV	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
NmeAIII	GCCGAG	3 cut(s)	216, 1417, 2470
NmuCI	GTSAC	4 cut(s)	1007, 1985, 2266, 2451
NsbI	TGCGCA	1 cut(s)	1463
NsiI	ATGCAT	1 cut(s)	1657
NspI	RCATGY	1 cut(s)	1340
PagI	TCATGA	2 cut(s)	1641, 2509
PaqCI	CACCTGC	2 cut(s)	2462, 2636
PceI	AGGCCT	2 cut(s)	2006, 2203
PciSI	GCTCTTC	2 cut(s)	338, 546
PcsI	WCGNNNNNNNCGW	5 cut(s)	138, 225, 294, 348, 647
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
PfeI	GAWTC	3 cut(s)	887, 2543, 2834
PflFI	GACNNNGTC	2 cut(s)	83, 1171
PflMI	CCANNNNNTGG	2 cut(s)	487, 2590
PfoI	TCCNGGA	1 cut(s)	622
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	3 cut(s)	635, 1047, 1459
PpsI	GAGTC	3 cut(s)	635, 1047, 1459
Ppu21I	YACGTR	1 cut(s)	684
PpuMI	RGGWCCY	2 cut(s)	1117, 2819
Psp124BI	GAGCTC	2 cut(s)	33, 495
Psp5II	RGGWCCY	2 cut(s)	1117, 2819
Psp6I	CCWGG	2 cut(s)	480, 622
PspGI	CCWGG	2 cut(s)	480, 622
PspN4I	GGNNCC	6 cut(s)	43, 503, 637, 1119, 2031, 2820
PspPI	GGNCC	2 cut(s)	1117, 2819
PspPPI	RGGWCCY	2 cut(s)	1117, 2819
PsrI	GAACNNNNNNTAC	2 cut(s)	2151, 2183
PstI	CTGCAG	3 cut(s)	1423, 2056, 2494
PstNI	CAGNNNCTG	2 cut(s)	2026, 2087
PsuI	RGATCY	2 cut(s)	1741, 2575
PsyI	GACNNNGTC	2 cut(s)	83, 1171
PvuI	CGATCG	1 cut(s)	21
PvuII	CAGCTG	2 cut(s)	1670, 2051
RsaI	GTAC	3 cut(s)	206, 2290, 2560
RsaNI	GTAC	3 cut(s)	205, 2289, 2559
RseI	CAYNNNNRTG	2 cut(s)	674, 1261
SacI	GAGCTC	2 cut(s)	33, 495
SalI	GTCGAC	1 cut(s)	1050
SapI	GCTCTTC	2 cut(s)	338, 546
SaqAI	TTAA	6 cut(s)	876, 1227, 1359, 1947, 1982, 2163
Sau96I	GGNCC	2 cut(s)	1117, 2819
ScaI	AGTACT	2 cut(s)	2290, 2560
SchI	GAGTC	3 cut(s)	636, 1047, 1460
ScrFI	CCNGG	3 cut(s)	26, 482, 624
SduI	GDGCHC	8 cut(s)	33, 44, 495, 504, 650, 1903, 2479, 2706
SfcI	CTRYAG	4 cut(s)	1419, 2052, 2490, 2571
SinI	GGWCC	2 cut(s)	1117, 2819
SmiMI	CAYNNNNRTG	2 cut(s)	674, 1261
SmlI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2323, 2790
SmoI	CTYRAG	6 cut(s)	11, 302, 981, 991, 2323, 2790
SnaBI	TACGTA	1 cut(s)	684
SpeI	ACTAGT	1 cut(s)	2555
SseBI	AGGCCT	2 cut(s)	2006, 2203
SspMI	CTAG	5 cut(s)	497, 2103, 2241, 2556, 2920
SstI	GAGCTC	2 cut(s)	33, 495
StuI	AGGCCT	2 cut(s)	2006, 2203
StyD4I	CCNGG	3 cut(s)	24, 480, 622
StyI	CCWWGG	6 cut(s)	36, 46, 66, 111, 496, 2436
TaaI	ACNGT	8 cut(s)	463, 1013, 1202, 1615, 1991, 2180, 2551, 2629
TaiI	ACGT	2 cut(s)	228, 686
TatI	WGTACW	3 cut(s)	204, 2288, 2558
TauI	GCSGC	4 cut(s)	54, 165, 607, 2444
TfiI	GAWTC	3 cut(s)	887, 2543, 2834
Tru1I	TTAA	6 cut(s)	876, 1227, 1359, 1947, 1982, 2163
Tru9I	TTAA	6 cut(s)	876, 1227, 1359, 1947, 1982, 2163
TscAI	CASTG	8 cut(s)	1573, 2031, 2088, 2488, 2499, 2545, 2704, 2719
TseFI	GTSAC	4 cut(s)	1007, 1985, 2266, 2451
TseI	GCWGC	6 cut(s)	7, 977, 1750, 2051, 2468, 2489
Tsp45I	GTSAC	4 cut(s)	1007, 1985, 2266, 2451
TspGWI	ACGGA	2 cut(s)	1476, 2556
TspRI	CASTG	8 cut(s)	1573, 2031, 2088, 2488, 2499, 2545, 2704, 2719
Tth111I	GACNNNGTC	2 cut(s)	83, 1171
Van91I	CCANNNNNTGG	2 cut(s)	487, 2590
VneI	GTGCAC	1 cut(s)	2475
VpaK11BI	GGWCC	2 cut(s)	1117, 2819
XapI	RAATTY	2 cut(s)	2296, 2343
XceI	RCATGY	1 cut(s)	1340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1299
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	222, 1051
XmnI	GAANNNNTTC	3 cut(s)	1549, 2076, 2598
XspI	CTAG	5 cut(s)	497, 2103, 2241, 2556, 2920
ZrmI	AGTACT	2 cut(s)	2290, 2560
Zsp2I	ATGCAT	1 cut(s)	1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.