Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

7148638 .. 7150979

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGCAGGTGAAGACCATAGGGCGAGAGCTTGCGATGGGCTCTCAAGGCAGCTTCGGCCATTTCAAGGAGTTCCTGGACCTCGTCAAGTCCATCGGCAAAGCTCGATCCAAGGCCGAAAAAGAGCGCATCTTGCTCCTCGAGATCGAAACCCTAAAACGATGTCTCTCCGAGCCCGAAATCCCCAAGTGCAAAATGAAGGAGTACATCATCCGCCTCATCTACGTCGAAATGCTCAACCACAACGGCTCCTTTGCCTACATCCACGCCTTCAAGATGACCCAAGATCTCTTGCTCAAATGCACTGGTTACCTCACCATTTTGCTCTTCCTCAGTGACGATCACGATTTGATCATCTTGATCGTTAACACCATCCAGAAGGATCTCAAGTCGGACAATTACCTTGTCATTTCCGCTGCTCTCAATGCCAAGCGGCTTTGTGATAACGATCGGGGAGTTATGGGTGCCACGGTCTGCCCCTTGTTCGATCCCATTACCATCGATGTGAATTCTTATAAGGATTTGGTGGTCAGCTTTGTCAGCATTCTCAAACAGGTCGCCGAGCGCAAGTTGCCCAACACCTACGATTACCATCAGTTCAGGTTTTACTTACTTTCAATGAAGTTGAGCTTATTAATGTGGGAAGTTTTTGCTTCTCCATGTGTGGAGCGTGCGGAGCAATTTCCACCAAGTAATCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAACATGCGGGAGATTTGGTAAATGTCAAGGTGGCACATAACTTGATGAAGTTGATTGCTGAGGGATTTGGAGAGGATGATGATTCTGCAGATAATCAAGAGGCATATTCAAATGATGAATCCGTCAAGGTATCCCTCAAACTCAGTTTGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

296

Amino Acids

33.72

Weight (kDa)

5.6

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	464
AciI	CCGC	5 cut(s)	214, 414, 433, 674, 737
AclWI	GGATC	3 cut(s)	102, 390, 482
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	5 cut(s)	67, 274, 618, 731, 840
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	31, 54, 104, 534, 630
AluI	AGCT	5 cut(s)	31, 54, 104, 534, 630
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	102, 390, 482
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	58, 114
ApeKI	GCWGC	2 cut(s)	51, 416
ApoI	RAATTY	1 cut(s)	508
AseI	ATTAAT	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	129, 567
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	22, 307
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	2 cut(s)	44, 177
BbsI	GAAGAC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	63, 403
BccI	CCATC	5 cut(s)	31, 101, 380, 506, 600
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	871
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	816
BfuI	GTATCC	1 cut(s)	871
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	3 cut(s)	52, 417, 434
BlsI	GCNGC	3 cut(s)	53, 418, 435
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	250, 466
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	30, 371
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	2 cut(s)	447, 591
BsaJI	CCNNGG	2 cut(s)	111, 468
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	2 cut(s)	447, 591
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	111, 468
BseGI	GGATG	4 cut(s)	210, 261, 372, 811
BseJI	GATNNNNATC	2 cut(s)	447, 591
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	3 cut(s)	346, 780, 886
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	63, 403
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	60, 116
BshNI	GGYRCC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	60, 116
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	44, 177
Bsp143I	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
BspACI	CCGC	5 cut(s)	214, 414, 433, 674, 737
BspANI	GGCC	2 cut(s)	60, 116
BspCNI	CTCAG	3 cut(s)	345, 781, 885
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	250, 466
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	3 cut(s)	102, 390, 482
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	111, 468
BssMI	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	33, 672
BstDEI	CTNAG	3 cut(s)	332, 789, 872
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	4 cut(s)	210, 261, 372, 811
BstHHI	GCGC	2 cut(s)	129, 567
BstKTI	GATC	9 cut(s)	110, 147, 289, 343, 354, 363, 385, 451, 490
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 57, 133, 425, 540, 571, 676
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	737
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	63, 403
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	2 cut(s)	286, 382
BstYI	RGATCY	2 cut(s)	286, 382
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	871
BsuRI	GGCC	2 cut(s)	60, 116
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	210, 261, 372, 811
BtsIMutI	CAGTG	2 cut(s)	303, 340
Cac8I	GCNNGC	2 cut(s)	33, 672
CfoI	GCGC	2 cut(s)	129, 567
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	660, 715, 734
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	332, 789, 872
DpnI	GATC	9 cut(s)	109, 146, 288, 342, 353, 362, 384, 450, 489
DpnII	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	44, 177
Eco47I	GGWCC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	44, 177
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	663, 718, 737
FaiI	YATR	8 cut(s)	20, 461, 516, 661, 716, 735, 768, 835
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	3 cut(s)	659, 714, 733
FauI	CCCGC	1 cut(s)	730
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	52, 417, 434
FokI	GGATG	4 cut(s)	197, 248, 359, 818
FriOI	GRGCYC	2 cut(s)	44, 177
Fsp4HI	GCNGC	3 cut(s)	52, 417, 434
GlaI	GCGC	2 cut(s)	128, 566
GluI	GCNGC	3 cut(s)	52, 417, 434
HaeIII	GGCC	2 cut(s)	60, 116
HhaI	GCGC	2 cut(s)	129, 567
Hin1II	CATG	3 cut(s)	663, 718, 737
Hin6I	GCGC	2 cut(s)	127, 565
HinP1I	GCGC	2 cut(s)	127, 565
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	812, 848
HpaI	GTTAAC	1 cut(s)	367
HphI	GGTGA	2 cut(s)	22, 307
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	172, 394
Hpy188III	TCNNGA	7 cut(s)	142, 274, 344, 358, 376, 709, 827
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	193, 280, 373
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	192, 303, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 57, 133, 425, 540, 571, 676
HpyF3I	CTNAG	3 cut(s)	332, 789, 872
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	663, 718, 737
HspAI	GCGC	2 cut(s)	127, 565
Ksp22I	TGATCA	1 cut(s)	351
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	5 cut(s)	4, 141, 254, 667, 676
LpnPI	CCDG	7 cut(s)	62, 89, 291, 389, 539, 586, 722
Lsp1109I	GCAGC	2 cut(s)	63, 403
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	308, 335
MalI	GATC	9 cut(s)	109, 146, 288, 342, 353, 362, 384, 450, 489
MboI	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
MboII	GAAGA	2 cut(s)	25, 319
MflI	RGATCY	2 cut(s)	286, 382
MhlI	GDGCHC	2 cut(s)	44, 177
MluCI	AATT	3 cut(s)	397, 508, 680
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	2 cut(s)	366, 635
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	7 cut(s)	48, 57, 133, 425, 540, 571, 676
NdeII	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
NlaIII	CATG	3 cut(s)	663, 718, 737
NlaIV	GGNNCC	2 cut(s)	250, 466
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	812, 848
PflFI	GACNNNGTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	53, 418, 435
Ple19I	CGATCG	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	635
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	250, 466
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	820
PsuI	RGATCY	2 cut(s)	286, 382
PsyI	GACNNNGTC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	366, 635
SatI	GCNGC	3 cut(s)	52, 417, 434
Sau3AI	GATC	9 cut(s)	107, 144, 286, 340, 351, 360, 382, 448, 487
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	44, 177
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	816
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	3 cut(s)	45, 140, 386
SmoI	CTYRAG	3 cut(s)	45, 140, 386
Sse9I	AATT	3 cut(s)	397, 508, 680
SsiI	CCGC	5 cut(s)	214, 414, 433, 674, 737
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	6 cut(s)	106, 141, 147, 228, 486, 501
TasI	AATT	3 cut(s)	397, 508, 680
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	2 cut(s)	812, 848
Tru1I	TTAA	2 cut(s)	366, 635
Tru9I	TTAA	2 cut(s)	366, 635
TscAI	CASTG	2 cut(s)	310, 340
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	51, 416
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	5 cut(s)	212, 635, 731, 791, 861
TspGWI	ACGGA	1 cut(s)	841
TspRI	CASTG	2 cut(s)	310, 340
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	635
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
XhoI	CTCGAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.