Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

11073960 .. 11079861

Gene Structure 5902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTCCATTGCCTCTTCTGTTCTCCTTGGTGTTGATGAAGGCATATGCTGTTACAGCAATCATGAAAATATATGCATTTGAAATATCAGCTGCAAGAAAAGTGGATATGCTACCCGAGTGTCAATCTTTGGTGGAGGAATTATCAGCTTCTCATTCTACAGATCTCCAGCAGCGTGCATATGAATTGCAAGCTGTCATTGACATAGATGTTCATGCCATTGAGAGTATTATGCCGTCAGATGCAAGTTGTGAAGACATTGAGTCTTCGTTTGAGGCCTATGAGCTTCCCAAACCACTGGTGCCGTCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCGGTGCCTGAACCATATTATGCTAGGGAGACACACCAGGCTGCATCATTGCCATCTGTGTCAGATGCAGGATCATCACAACTTAAATTACGACTTGACGGTGTTCAGAAGAAATGGGGTAGGCCTACATACTCGTCATCTGCATCTTCGACCTCAACATCTAGTTCCCACAAAACGACAAACGGGGTAACACAGGTAGATGGTGTGAGTACTTCGAACTCAAAAGGACGTGATACTTATGATTCAAGGAAGCCATCAGTTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTTTTTGGAGGTTCATCAAGAACAGAGAAGAGGGCATCTTCGGGCAACCATAAAGTGTCAAAGGCCACAGAGAAATCGCACGTAGGGAAGGCACACAGTGACACTCAGTTGGAAGGGCTTCTTGATCAAACCGAAGCTACATCAACCATGAACAATGGTGCAGCAGGTGCTTCAAGAACACCTGAAATTATGGGATTATATGCAGATAATGCTGTGAGTGGGCTCAGCAGCAGTGTTGCCAATAGAGATGAATTTAATCTTGCATCTGAGTTATCAAATGCTGCAAGGACTTCTCAAGTTGGGGTGTCACAATTGAATAGGGTCCTAACCCTAAAGATTCATTGGAAAAGGATGCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

337

Amino Acids

36.04

Weight (kDa)

6.32

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	301, 355
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	615, 899
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	1 cut(s)	562
AgsI	TTSAA	5 cut(s)	83, 597, 614, 822, 964
AhdI	GACNNNNNGTC	1 cut(s)	262
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	6 cut(s)	92, 149, 194, 286, 323, 785
AluI	AGCT	6 cut(s)	92, 149, 194, 286, 323, 785
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	4 cut(s)	276, 473, 639, 711
ApeKI	GCWGC	7 cut(s)	92, 172, 323, 392, 809, 876, 929
ApoI	RAATTY	2 cut(s)	615, 899
Asp700I	GAANNNNTTC	2 cut(s)	348, 765
AspS9I	GGNCC	1 cut(s)	970
AsuII	TTCGAA	1 cut(s)	566
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	970
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	301, 355
BanII	GRGCYC	1 cut(s)	873
BbsI	GAAGAC	2 cut(s)	258, 261
BbvI	GCAGC	7 cut(s)	79, 184, 310, 379, 821, 888, 916
BccI	CCATC	3 cut(s)	412, 545, 613
BceAI	ACGGC	2 cut(s)	220, 289
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	375, 513
BfmI	CTRYAG	2 cut(s)	159, 324
BfuAI	ACCTGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	7 cut(s)	93, 173, 324, 393, 810, 877, 930
BlpI	GCTNAGC	1 cut(s)	872
BlsI	GCNGC	7 cut(s)	94, 174, 325, 394, 811, 878, 931
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	970
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	970
BmiI	GGNNCC	4 cut(s)	6, 303, 357, 971
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	8 cut(s)	232, 341, 404, 406, 503, 692, 920, 990
BpiI	GAAGAC	2 cut(s)	258, 261
BpmI	CTGGAG	3 cut(s)	152, 303, 606
Bpu1102I	GCTNAGC	1 cut(s)	872
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	927
BsaAI	YACGTR	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	303, 642
Bse3DI	GCAATG	2 cut(s)	8, 398
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	332, 1005
BseMI	GCAATG	2 cut(s)	8, 398
BseMII	CTCAG	3 cut(s)	767, 886, 906
BseNI	ACTGG	2 cut(s)	303, 642
BseXI	GCAGC	7 cut(s)	79, 184, 310, 379, 821, 888, 916
BsgI	GTGCAG	1 cut(s)	828
BshFI	GGCC	4 cut(s)	278, 475, 641, 713
BshNI	GGYRCC	2 cut(s)	301, 355
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	278, 475, 641, 713
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	3 cut(s)	163, 422, 772
Bsp1720I	GCTNAGC	1 cut(s)	872
BspANI	GGCC	4 cut(s)	278, 475, 641, 713
BspCNI	CTCAG	3 cut(s)	766, 885, 907
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	4 cut(s)	6, 303, 357, 971
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	301, 355
BsrDI	GCAATG	2 cut(s)	8, 398
BsrI	ACTGG	2 cut(s)	303, 642
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	163, 422, 772
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	452, 746
Bst6I	CTCTTC	2 cut(s)	21, 671
BstAPI	GCANNNNNTGC	2 cut(s)	815, 857
BstBAI	YACGTR	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	177, 192
BstDEI	CTNAG	3 cut(s)	753, 872, 915
BstF5I	GGATG	2 cut(s)	332, 1005
BstKTI	GATC	3 cut(s)	166, 425, 775
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	163, 422, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 329, 815, 857
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	159, 324
BstV1I	GCAGC	7 cut(s)	79, 184, 310, 379, 821, 888, 916
BstV2I	GAAGAC	2 cut(s)	258, 261
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	278, 475, 641, 713
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	332, 1005
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	3 cut(s)	296, 751, 886
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	177, 192
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	970
Csp6I	GTAC	1 cut(s)	561
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	3 cut(s)	64, 215, 796
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	3 cut(s)	753, 872, 915
DpnI	GATC	3 cut(s)	165, 424, 774
DpnII	GATC	3 cut(s)	163, 422, 772
DraIII	CACNNNGTG	1 cut(s)	746
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	21, 671
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	2 cut(s)	21, 671
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	2 cut(s)	278, 475
Eco24I	GRGCYC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	970
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	67, 218, 799
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	3 cut(s)	63, 214, 795
FauNDI	CATATG	2 cut(s)	46, 181
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	7 cut(s)	93, 173, 324, 393, 810, 877, 930
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	7 cut(s)	93, 173, 324, 393, 810, 877, 930
FspBI	CTAG	2 cut(s)	375, 513
GluI	GCNGC	7 cut(s)	93, 173, 324, 393, 810, 877, 930
GsuI	CTGGAG	3 cut(s)	152, 303, 606
HaeIII	GGCC	4 cut(s)	278, 475, 641, 713
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	3 cut(s)	67, 218, 799
HinfI	GANTC	3 cut(s)	263, 593, 985
HpaII	CCGG	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	4 cut(s)	241, 415, 459, 916
Hpy188III	TCNNGA	6 cut(s)	64, 309, 623, 666, 770, 822
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	3 cut(s)	34, 730, 755
HpyCH4III	ACNGT	2 cut(s)	452, 746
HpyCH4IV	ACGT	2 cut(s)	580, 729
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 329, 815, 857
HpyF3I	CTNAG	3 cut(s)	753, 872, 915
HpySE526I	ACGT	2 cut(s)	580, 729
Hsp92II	CATG	3 cut(s)	67, 218, 799
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	163, 422, 772
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	7 cut(s)	79, 184, 310, 379, 821, 888, 916
LweI	GCATC	8 cut(s)	232, 341, 404, 406, 503, 692, 920, 990
MaeI	CTAG	2 cut(s)	375, 513
MaeII	ACGT	2 cut(s)	580, 729
MaeIII	GTNAC	4 cut(s)	52, 538, 746, 954
MalI	GATC	3 cut(s)	165, 424, 774
MboI	GATC	3 cut(s)	163, 422, 772
MboII	GAAGA	7 cut(s)	8, 258, 266, 472, 489, 678, 688
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	873
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	7 cut(s)	140, 185, 437, 615, 834, 899, 959
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	8 cut(s)	24, 130, 268, 327, 346, 514, 650, 672
Mox20I	TGGCCA	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	2 cut(s)	348, 765
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	2 cut(s)	435, 903
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	2 cut(s)	92, 323
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	959
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	56, 329, 815, 857
NdeI	CATATG	2 cut(s)	46, 181
NdeII	GATC	3 cut(s)	163, 422, 772
NlaIII	CATG	3 cut(s)	67, 218, 799
NlaIV	GGNNCC	4 cut(s)	6, 303, 357, 971
NmuCI	GTSAC	2 cut(s)	746, 954
NsiI	ATGCAT	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	566
PagI	TCATGA	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	803
PceI	AGGCCT	2 cut(s)	278, 475
PdmI	GAANNNNTTC	2 cut(s)	348, 765
PfeI	GAWTC	2 cut(s)	593, 985
PkrI	GCNGC	7 cut(s)	94, 174, 325, 394, 811, 878, 931
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	970
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	6, 303, 357, 971
PspPI	GGNCC	1 cut(s)	970
PspPPI	RGGWCCY	1 cut(s)	970
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	2 cut(s)	92, 323
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	435, 903
SatI	GCNGC	7 cut(s)	93, 173, 324, 393, 810, 877, 930
Sau3AI	GATC	3 cut(s)	163, 422, 772
Sau96I	GGNCC	1 cut(s)	970
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	8 cut(s)	232, 341, 404, 406, 503, 692, 920, 990
SfcI	CTRYAG	2 cut(s)	159, 324
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	1 cut(s)	970
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
Sse9I	AATT	7 cut(s)	140, 185, 437, 615, 834, 899, 959
SseBI	AGGCCT	2 cut(s)	278, 475
SspMI	CTAG	2 cut(s)	375, 513
StuI	AGGCCT	2 cut(s)	278, 475
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	452, 746
TaiI	ACGT	2 cut(s)	583, 732
TaqI	TCGA	2 cut(s)	500, 566
TasI	AATT	7 cut(s)	140, 185, 437, 615, 834, 899, 959
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	593, 985
Tru1I	TTAA	2 cut(s)	435, 903
Tru9I	TTAA	2 cut(s)	435, 903
TscAI	CASTG	3 cut(s)	303, 751, 886
TseFI	GTSAC	2 cut(s)	746, 954
TseI	GCWGC	7 cut(s)	92, 172, 323, 392, 809, 876, 929
Tsp45I	GTSAC	2 cut(s)	746, 954
TspDTI	ATGAA	8 cut(s)	53, 80, 198, 203, 651, 812, 912, 977
TspRI	CASTG	3 cut(s)	303, 751, 886
VpaK11BI	GGWCC	1 cut(s)	970
XapI	RAATTY	2 cut(s)	615, 899
XmnI	GAANNNNTTC	2 cut(s)	348, 765
XspI	CTAG	2 cut(s)	375, 513
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.