Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

3440841 .. 3448194

Gene Structure 7354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCGATGGGCTCCCAGGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCGGAGGAGGAGCGCATCGTCCTCCTCGAGATCGAAACCCTTAAACGACGTCTCTCCGAGCCCGATATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGCTCGGCCACGACGGCTCCTTCGCCTACATTCACGCCGTTAAGATGACTCACGACGATAACCTCCTCCTCAAGCGCACCGGTTACCTCGCCGTCTCCCTCTTCCTCAGCGACGATCACGATTTGATCATCTTGATCGTCAACACCATCCAGAAGGATCTCAGGTCTGACAATTACCTTGTCGTTTGCGCCGCCCTCAATGCCGTTTGCAAGCTCATCAACGACGAGACTGTGCCTGCCGTTTTGCCCCAGGTCGTCGACCTCCTCGGCCATCCCAAGGAGGCTGTCAGGAAGAAGGCCATCATGGCGCTTCACCGATTTTATCAGAAATCGCCCTCTTCTGTTTCGCATCTGGTGTCAAATTTTCGGAAGCGGCTCTGCGATAACGATCCGGGCGTCATGGGTGCCACGCTCTGCTCGATGATCGATCTAATTACCATCGATGCAAATTCTTTTAAGGATTTGGTGGTCAGCTTTGTCAGCATTCTCAAGCAGGTCGCCGAGCGCAGGTTGCCCAAGGCCTACGATTACCATCAGCTTCCGGCGCCTTTTATCCAGATTAGGTTGTTGAAAATTCTAGCATTGTTGGGGAGTGGTGATAAGCAATCGAGTGAGCAGATGTATACTGTAGTTGGCGATATATTTCGGAAGTGCGATTCCTCAAGTAATATTGGGAATGCTGTTCTTTATGAGTGCATTTGTTGCGTTTCTTCCATATATCCCAATCCTAGGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATCTGAAATATATGGGCATTGATGCCCTTGGTCGACTGATAAAGATTAGTCCAGAGATAGCTGAGCAACACCAACTAGCCGTCATCGATTGCTTAGAGGACCCAGATGATACTCTGAAACGAAAAACGTTTGAACTATTGTACAAGATGACCAAGTCCTCCAATGTGGAAGTGATTGTGGATCGTATGATTGATTACATGATTAGCATTAATGACAACCATTACAAAACTTACATAGCTTCGAGATGCGTGGAGCTTGCAGAGCAATTTGCCCCAAGTAATCAATGGTTTATCCTGACCATGAATAAAGTCTTTGAACATGCGGGGGATCTAGTGAATGTTAAGGTGGCACATAACTTGATGAAGTTGATCGCCGAGGGATTTGGAGAGGATGATGATAATGCAGATAGTCAGCTGAGATCATCTGCAGTGGAGTCATATTTGCGTATAATTGGTGAGCCAAAGCTTCCATCTGTATTTCTTCAGGTCATTTGTTGGGTTTTGGGAGAATATGGAACTGCTGATGGAAAATATTCTGCTTCCTATATCACTGGGAAGTTATGTGATGTTGCAGAGGCATATTCAAATGATGAATCCGTCAAGGCTTATGCCGTTACAGCAATCATGAAAATATATGCATTTGAAATATCAGCTCGGAGAAAAGTCGATATCCTACCTGAGTGTCAATCTTTGGTGGAAGAACTATCAGCTTCTCACTCAACAGATCTGCAGCAGCGTGCATATGAATTGCAAGCTGTCATTAGCTTAGATGCTCCTGCTGTTGAGAGTATAATTCCGCCAGACGCAAGTTGTGAAGATATTGAGATTGATAAAAACCTTTCATTCCTCAATGGCTATGTCCAAGAAGCACTAGAAAAAGGCGCTCAGCCCTATATTCCTGAGAATGAGCGCTCTGGAGTGTTAGATATCAGCAATTTCGGAAACCAAGATCACCATGAAGCTTTAACCCATAGTCTTAGGTTTGAGGCATATGAGCTTCCAAAGCCAGTAATGCCATCAAGAGTTCCTCCAGCTGCAGTTGCTTCCTCAACTGAGCTTGTTCCAGTGCCTGAACCATCTTATGCGAGGGAGACCCGCCAGCCTGCATCATTGCCATCTGCATCAGACGCAGGATCATCAGAACTTAAGCTACGACTTGACGGTGTTCAAAAAAAATGGGGCAGGCCAACATATTCTTCTTCTGCATCGCCGAGCACGAATTCTTCAAGTTCTACTTCCCACAAAACAACGAATGGGGTTACTCAAGTAGATAGTGTGGGCACTTCTAATTCAAAAGCCCGTGATACTTATGATTCAAGGCGGCCACAGGTTGAAATTTCTCCAGAAAAGCAGAAGCTTGCCTCTTCACTGTTTGGAGGTCCATCAAAAACCGAGAAGAGGCCATCTTCTGCCAACCATAAGGCGTCTAAGGCGAGTACCCATACTTCAGAGAAGTCCCAAGCGCCAAAGGCAGCAGCTGCACACACTGAAGTTAATCGTGAACCTGCTCCAGACTTGCTCGACTTGGGTGACTCAACTAGTAGTAGTTCTGCTCCGGCCATAGACCCTTTCAAGCAGTTAGAAGGGCTTCTTGATCAAACTGATGTCGCTTCGAATGTGAACCATGGTACAGCAGGTGCTGCTAAGACACCTGATTTTATGGGATTATATGCAGATACACCTGTCAGTGGGCTCGGTAGCAGTGTTGGGGATCTTTTGCCGACCAACAGAGATGAGTTTAATCTTACATCTGAGTTATCAAATGCCACAAGGACTGCTCAAGGCGGGGTAACACAGTTTAATAAGGGTCCTAACCCTAAAGATGCCTTGGAAAAGGATTCACTTGTAAGGCAGATGGGTGTGACGCCAACAAGTCCGAATCCCAACTTGTTTCGAGATTTGCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

976

Amino Acids

107.09

Weight (kDa)

5.61

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 595	1.1e-83	Adaptin N terminal region
Cnd1	PF12717	140 - 299	1.2e-06	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2642
AatII	GACGTC	1 cut(s)	166
Acc36I	ACCTGC	4 cut(s)	715, 729, 2530, 2642
AccB1I	GGYRCC	2 cut(s)	635, 775
AccI	GTMKAC	4 cut(s)	222, 489, 854, 1051
AccII	CGCG	1 cut(s)	35
AclI	AACGTT	1 cut(s)	1145
AclWI	GGATC	7 cut(s)	102, 396, 614, 1206, 1353, 2158, 2736
AcoI	YGGCCR	6 cut(s)	22, 58, 238, 499, 2339, 2574
AcsI	RAATTY	5 cut(s)	592, 679, 804, 2236, 2352
AcuI	CTGAAG	3 cut(s)	1484, 2448, 2526
AcyI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
AfaI	GTAC	4 cut(s)	206, 1160, 2455, 2647
AfeI	AGCGCT	1 cut(s)	1928
AfiI	CCNNNNNNNGG	7 cut(s)	24, 67, 508, 738, 960, 2415, 2705
AflII	CTTAAG	1 cut(s)	2162
AgeI	ACCGGT	1 cut(s)	311
AhlI	ACTAGT	1 cut(s)	2555
AjnI	CCWGG	2 cut(s)	45, 480
AjuI	GAANNNNNNNTTGG	2 cut(s)	2197, 2229
Alw21I	GWGCWC	2 cut(s)	33, 2234
Alw26I	GTCTC	4 cut(s)	170, 331, 452, 2102
AlwI	GGATC	7 cut(s)	102, 396, 614, 1206, 1353, 2158, 2736
AlwNI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
Ama87I	CYCGRG	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	1928
ApeKI	GCWGC	9 cut(s)	7, 977, 1747, 1750, 2051, 2489, 2492, 2495, 2657
ApoI	RAATTY	5 cut(s)	592, 679, 804, 2236, 2352
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AseI	ATTAAT	1 cut(s)	1227
AsiGI	ACCGGT	1 cut(s)	311
Asp700I	GAANNNNTTC	2 cut(s)	1549, 2604
AspA2I	CCTAGG	1 cut(s)	959
AspS9I	GGNCC	3 cut(s)	1117, 2396, 2825
AsuC2I	CCSGG	2 cut(s)	26, 624
AsuHPI	GGTGA	5 cut(s)	536, 839, 1484, 1961, 2558
AsuII	TTCGAA	1 cut(s)	2630
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	1117, 2396, 2825
AvrII	CCTAGG	1 cut(s)	959
BaeGI	GKGCMC	1 cut(s)	2300
BaeI	ACNNNNGTAYC	2 cut(s)	2685, 2718
BanI	GGYRCC	2 cut(s)	635, 775
BanII	GRGCYC	4 cut(s)	33, 44, 177, 2712
BarI	GAAGNNNNNNTAC	2 cut(s)	2446, 2478
Bbv12I	GWGCWC	2 cut(s)	33, 2234
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	9 cut(s)	19, 964, 1759, 1762, 2038, 2482, 2501, 2504, 2644
BceAI	ACGGC	7 cut(s)	254, 262, 308, 419, 455, 1082, 1613
BciT130I	CCWGG	2 cut(s)	47, 482
BclI	TGATCA	2 cut(s)	357, 2611
BcnI	CCSGG	2 cut(s)	26, 624
BcoDI	GTCTC	4 cut(s)	170, 331, 452, 2102
BcuI	ACTAGT	1 cut(s)	2555
BfaI	CTAG	6 cut(s)	809, 960, 1094, 1349, 1889, 2556
BfmI	CTRYAG	4 cut(s)	858, 1443, 1745, 2052
BfoI	RGCGCY	5 cut(s)	542, 779, 1902, 1930, 2483
BfrI	CTTAAG	1 cut(s)	2162
BfuAI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
BglI	GCCNNNNNGGC	2 cut(s)	246, 536
BglII	AGATCT	1 cut(s)	1741
BlnI	CCTAGG	1 cut(s)	959
BlpI	GCTNAGC	2 cut(s)	1080, 1902
Bme1390I	CCNGG	4 cut(s)	26, 47, 482, 624
Bme18I	GGWCC	3 cut(s)	1117, 2396, 2825
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	3 cut(s)	1117, 2396, 2825
BmiI	GGNNCC	6 cut(s)	43, 250, 637, 777, 1119, 2826
BmrFI	CCNGG	4 cut(s)	26, 47, 482, 624
BmrI	ACTGGG	1 cut(s)	1578
BmuI	ACTGGG	1 cut(s)	1578
BpmI	CTGGAG	4 cut(s)	1953, 2031, 2343, 2511
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	2 cut(s)	1080, 1902
Bpu14I	TTCGAA	1 cut(s)	2630
BpuEI	CTTGAG	7 cut(s)	287, 704, 877, 966, 976, 2265, 2781
BpuMI	CCSGG	2 cut(s)	26, 624
Bsa29I	ATCGAT	3 cut(s)	657, 672, 1104
BsaBI	GATNNNNATC	2 cut(s)	618, 762
BsaHI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BsaI	GGTCTC	1 cut(s)	2102
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 67, 508, 738, 960, 2415, 2705
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	1573, 2024, 2081
Bse3DI	GCAATG	1 cut(s)	2126
Bse8I	GATNNNNATC	2 cut(s)	618, 762
BseBI	CCWGG	2 cut(s)	47, 482
BseCI	ATCGAT	3 cut(s)	657, 672, 1104
BseGI	GGATG	4 cut(s)	210, 378, 502, 1414
BseJI	GATNNNNATC	2 cut(s)	618, 762
BseLI	CCNNNNNNNGG	7 cut(s)	24, 67, 508, 738, 960, 2415, 2705
BseMI	GCAATG	1 cut(s)	2126
BseMII	CTCAG	9 cut(s)	352, 406, 1071, 1424, 1686, 1908, 1916, 2061, 2760
BseNI	ACTGG	3 cut(s)	1573, 2024, 2081
BseRI	GAGGAG	6 cut(s)	128, 134, 137, 287, 290, 485
BseSI	GKGCMC	1 cut(s)	2300
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	9 cut(s)	19, 964, 1759, 1762, 2038, 2482, 2501, 2504, 2644
BsgI	GTGCAG	1 cut(s)	2481
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	25
BshNI	GGYRCC	2 cut(s)	635, 775
BshTI	ACCGGT	1 cut(s)	311
BshVI	ATCGAT	3 cut(s)	657, 672, 1104
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	33, 2234
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	5 cut(s)	25, 312, 623, 773, 2573
BslFI	GGGAC	1 cut(s)	2458
BslI	CCNNNNNNNGG	7 cut(s)	24, 67, 508, 738, 960, 2415, 2705
BsmAI	GTCTC	4 cut(s)	170, 331, 452, 2102
BsmBI	CGTCTC	2 cut(s)	170, 331
BsmFI	GGGAC	1 cut(s)	2458
BsmI	GAATGC	2 cut(s)	714, 913
Bso31I	GGTCTC	1 cut(s)	2102
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	2630
Bsp1286I	GDGCHC	6 cut(s)	33, 44, 177, 2234, 2300, 2712
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp1720I	GCTNAGC	2 cut(s)	1080, 1902
Bsp19I	CCATGG	1 cut(s)	2641
Bsp68I	TCGCGA	1 cut(s)	35
BspCNI	CTCAG	9 cut(s)	351, 405, 1072, 1425, 1687, 1909, 1915, 2062, 2761
BspDI	ATCGAT	3 cut(s)	657, 672, 1104
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	1641
BspLI	GGNNCC	6 cut(s)	43, 250, 637, 777, 1119, 2826
BspMAI	CTGCAG	3 cut(s)	1447, 1749, 2056
BspMI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
BspPI	GGATC	7 cut(s)	102, 396, 614, 1206, 1353, 2158, 2736
BspT104I	TTCGAA	1 cut(s)	2630
BspT107I	GGYRCC	2 cut(s)	635, 775
BspTI	CTTAAG	1 cut(s)	2162
BspTNI	GGTCTC	1 cut(s)	2102
BsrDI	GCAATG	1 cut(s)	2126
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	3 cut(s)	1573, 2024, 2081
BssAI	RCCGGY	1 cut(s)	311
BssNAI	GTATAC	1 cut(s)	855
BssNI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BssT1I	CCWWGG	8 cut(s)	66, 111, 507, 747, 959, 1045, 2641, 2844
Bst1107I	GTATAC	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	47, 482
Bst4CI	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
Bst6I	CTCTTC	5 cut(s)	338, 574, 998, 2386, 2408
BstACI	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
BstAFI	CTTAAG	1 cut(s)	2162
BstAPI	GCANNNNNTGC	3 cut(s)	933, 2495, 2657
BstAUI	TGTACA	1 cut(s)	1158
BstBI	TTCGAA	1 cut(s)	2630
BstDSI	CCRYGG	1 cut(s)	2641
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	210, 378, 502, 1414
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	5 cut(s)	542, 779, 1902, 1930, 2483
BstMAI	GTCTC	4 cut(s)	170, 331, 452, 2102
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	47, 482
BstNSI	RCATGY	1 cut(s)	1340
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	4 cut(s)	24, 45, 480, 622
BstSFI	CTRYAG	4 cut(s)	858, 1443, 1745, 2052
BstSLI	GKGCMC	1 cut(s)	2300
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	9 cut(s)	19, 964, 1759, 1762, 2038, 2482, 2501, 2504, 2644
BstX2I	RGATCY	4 cut(s)	388, 1345, 1741, 2728
BstYI	RGATCY	4 cut(s)	388, 1345, 1741, 2728
BstZ17I	GTATAC	1 cut(s)	855
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	3 cut(s)	657, 672, 1104
BsuTUI	ATCGAT	3 cut(s)	657, 672, 1104
BtgI	CCRYGG	1 cut(s)	2641
BtgZI	GCGATG	2 cut(s)	50, 2208
BtsCI	GGATG	4 cut(s)	210, 378, 502, 1414
BtsI	GCAGTG	2 cut(s)	1452, 2725
BtsIMutI	CAGTG	7 cut(s)	1452, 1566, 2088, 2384, 2502, 2710, 2725
BtuMI	TCGCGA	1 cut(s)	35
BveI	ACCTGC	4 cut(s)	715, 729, 2530, 2642
CaiI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
CciI	TCATGA	1 cut(s)	1641
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	1117, 2396, 2825
ClaI	ATCGAT	3 cut(s)	657, 672, 1104
CseI	GACGC	5 cut(s)	616, 1829, 2153, 2430, 2890
Csp6I	GTAC	4 cut(s)	205, 1159, 2454, 2646
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	8 cut(s)	535, 631, 1216, 1318, 1337, 1642, 1973, 2642
CviQI	GTAC	4 cut(s)	205, 1159, 2454, 2646
DinI	GGCGCC	1 cut(s)	777
EaeI	YGGCCR	6 cut(s)	22, 58, 238, 499, 2339, 2574
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	5 cut(s)	338, 574, 998, 2386, 2408
EarI	CTCTTC	5 cut(s)	338, 574, 998, 2386, 2408
EciI	GGCGGA	3 cut(s)	131, 203, 1803
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	8 cut(s)	66, 111, 507, 747, 959, 1045, 2641, 2844
Eco147I	AGGCCT	1 cut(s)	752
Eco24I	GRGCYC	4 cut(s)	33, 44, 177, 2712
Eco31I	GGTCTC	1 cut(s)	2102
Eco32I	GATATC	3 cut(s)	181, 1687, 1945
Eco47I	GGWCC	3 cut(s)	1117, 2396, 2825
Eco47III	AGCGCT	1 cut(s)	1928
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	3 cut(s)	1484, 2448, 2526
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	1117, 2825
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	2236
EcoRII	CCWGG	2 cut(s)	45, 480
EcoRV	GATATC	3 cut(s)	181, 1687, 1945
EcoT14I	CCWWGG	8 cut(s)	66, 111, 507, 747, 959, 1045, 2641, 2844
EcoT22I	ATGCAT	1 cut(s)	1657
EcoT38I	GRGCYC	4 cut(s)	33, 44, 177, 2712
EgeI	GGCGCC	1 cut(s)	777
EheI	GGCGCC	1 cut(s)	777
ErhI	CCWWGG	8 cut(s)	66, 111, 507, 747, 959, 1045, 2641, 2844
Esp3I	CGTCTC	2 cut(s)	170, 331
FaeI	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
FalI	AAGNNNNNCTT	4 cut(s)	2236, 2268, 2592, 2624
FaqI	GGGAC	1 cut(s)	2458
FatI	CATG	8 cut(s)	534, 630, 1215, 1317, 1336, 1641, 1972, 2641
FauI	CCCGC	3 cut(s)	1333, 2120, 2795
FauNDI	CATATG	2 cut(s)	1759, 2008
FbaI	TGATCA	2 cut(s)	357, 2611
FblI	GTMKAC	4 cut(s)	222, 489, 854, 1051
FokI	GGATG	4 cut(s)	197, 365, 489, 1421
FriOI	GRGCYC	4 cut(s)	33, 44, 177, 2712
FspBI	CTAG	6 cut(s)	809, 960, 1094, 1349, 1889, 2556
GsuI	CTGGAG	4 cut(s)	1953, 2031, 2343, 2511
HaeII	RGCGCY	5 cut(s)	542, 779, 1902, 1930, 2483
HapII	CCGG	5 cut(s)	25, 312, 623, 773, 2573
HgaI	GACGC	5 cut(s)	616, 1829, 2153, 2430, 2890
Hin1I	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
Hin1II	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
HincII	GTYRAC	3 cut(s)	373, 490, 1052
HindII	GTYRAC	3 cut(s)	373, 490, 1052
HindIII	AAGCTT	3 cut(s)	1481, 1977, 2372
HinfI	GANTC	8 cut(s)	280, 887, 1451, 1610, 2330, 2549, 2855, 2896
HpaII	CCGG	5 cut(s)	25, 312, 623, 773, 2573
HphI	GGTGA	5 cut(s)	536, 839, 1484, 1961, 2558
Hpy166II	GTNNAC	7 cut(s)	223, 373, 490, 855, 1052, 2519, 2638
Hpy8I	GTNNAC	7 cut(s)	223, 373, 490, 855, 1052, 2519, 2638
Hpy99I	CGWCG	7 cut(s)	165, 230, 248, 290, 347, 458, 491
HpyAV	CCTTC	5 cut(s)	193, 262, 379, 520, 2594
HpyCH4III	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
HpyCH4IV	ACGT	3 cut(s)	163, 225, 1145
HpySE526I	ACGT	3 cut(s)	163, 225, 1145
Hsp92I	GRCGYC	5 cut(s)	163, 627, 776, 2441, 2882
Hsp92II	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
KasI	GGCGCC	1 cut(s)	775
Ksp22I	TGATCA	2 cut(s)	357, 2611
LmnI	GCTCC	9 cut(s)	4, 28, 47, 124, 254, 1270, 1795, 2530, 2575
Lsp1109I	GCAGC	9 cut(s)	19, 964, 1759, 1762, 2038, 2482, 2501, 2504, 2644
MaeI	CTAG	6 cut(s)	809, 960, 1094, 1349, 1889, 2556
MaeII	ACGT	3 cut(s)	163, 225, 1145
MaeIII	GTNAC	7 cut(s)	314, 1007, 1630, 2275, 2546, 2806, 2878
MflI	RGATCY	4 cut(s)	388, 1345, 1741, 2728
MhlI	GDGCHC	6 cut(s)	33, 44, 177, 2234, 2300, 2712
Mly113I	GGCGCC	1 cut(s)	776
MlyI	GAGTC	3 cut(s)	274, 1460, 2543
Mph1103I	ATGCAT	1 cut(s)	1657
MroXI	GAANNNNTTC	2 cut(s)	1549, 2604
MspA1I	CMGCKG	3 cut(s)	1432, 2051, 2495
MspCI	CTTAAG	1 cut(s)	2162
MspI	CCGG	5 cut(s)	25, 312, 623, 773, 2573
MspR9I	CCNGG	4 cut(s)	26, 47, 482, 624
Mva1269I	GAATGC	2 cut(s)	714, 913
MvaI	CCWGG	2 cut(s)	47, 482
MvnI	CGCG	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	776
NciI	CCSGG	2 cut(s)	26, 624
NcoI	CCATGG	1 cut(s)	2641
NdeI	CATATG	2 cut(s)	1759, 2008
NlaIII	CATG	8 cut(s)	538, 634, 1219, 1321, 1340, 1645, 1976, 2645
NlaIV	GGNNCC	6 cut(s)	43, 250, 637, 777, 1119, 2826
NmeAIII	GCCGAG	5 cut(s)	216, 477, 757, 1417, 2253
NmuCI	GTSAC	3 cut(s)	1007, 2546, 2878
NruI	TCGCGA	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	1657
NspI	RCATGY	1 cut(s)	1340
NspV	TTCGAA	1 cut(s)	2630
PaeR7I	CTCGAG	1 cut(s)	140
PagI	TCATGA	1 cut(s)	1641
PaqCI	CACCTGC	1 cut(s)	2642
PasI	CCCWGGG	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	5 cut(s)	138, 225, 624, 647, 2231
PctI	GAATGC	2 cut(s)	714, 913
PdmI	GAANNNNTTC	2 cut(s)	1549, 2604
PfeI	GAWTC	5 cut(s)	887, 1610, 2330, 2855, 2896
PflFI	GACNNNGTC	2 cut(s)	83, 1171
PinAI	ACCGGT	1 cut(s)	311
PleI	GAGTC	3 cut(s)	274, 1459, 2543
PluTI	GGCGCC	1 cut(s)	779
PpsI	GAGTC	3 cut(s)	274, 1459, 2543
PpuMI	RGGWCCY	2 cut(s)	1117, 2825
PshBI	ATTAAT	1 cut(s)	1227
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	1145
Psp5II	RGGWCCY	2 cut(s)	1117, 2825
Psp6I	CCWGG	2 cut(s)	45, 480
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	45, 480
PspN4I	GGNNCC	6 cut(s)	43, 250, 637, 777, 1119, 2826
PspPI	GGNCC	3 cut(s)	1117, 2396, 2825
PspPPI	RGGWCCY	2 cut(s)	1117, 2825
PsrI	GAACNNNNNNTAC	2 cut(s)	2151, 2183
PstI	CTGCAG	3 cut(s)	1447, 1749, 2056
PstNI	CAGNNNCTG	3 cut(s)	2087, 2495, 2657
PsuI	RGATCY	4 cut(s)	388, 1345, 1741, 2728
PsyI	GACNNNGTC	2 cut(s)	83, 1171
PvuII	CAGCTG	3 cut(s)	1432, 2051, 2495
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	4 cut(s)	206, 1160, 2455, 2647
RsaNI	GTAC	4 cut(s)	205, 1159, 2454, 2646
SacI	GAGCTC	1 cut(s)	33
SalI	GTCGAC	2 cut(s)	488, 1050
Sau96I	GGNCC	3 cut(s)	1117, 2396, 2825
SchI	GAGTC	3 cut(s)	274, 1460, 2543
ScrFI	CCNGG	4 cut(s)	26, 47, 482, 624
SduI	GDGCHC	6 cut(s)	33, 44, 177, 2234, 2300, 2712
SfcI	CTRYAG	4 cut(s)	858, 1443, 1745, 2052
SfoI	GGCGCC	1 cut(s)	777
Sfr274I	CTCGAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	2630
SinI	GGWCC	3 cut(s)	1117, 2396, 2825
SlaI	CTCGAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	2555
SseBI	AGGCCT	1 cut(s)	752
SspDI	GGCGCC	1 cut(s)	775
SspI	AATATT	2 cut(s)	901, 1550
SspMI	CTAG	6 cut(s)	809, 960, 1094, 1349, 1889, 2556
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	4 cut(s)	24, 45, 480, 622
StyI	CCWWGG	8 cut(s)	66, 111, 507, 747, 959, 1045, 2641, 2844
TaaI	ACNGT	6 cut(s)	463, 859, 1013, 2180, 2388, 2814
TaiI	ACGT	3 cut(s)	166, 228, 1148
TatI	WGTACW	2 cut(s)	204, 1158
TauI	GCSGC	4 cut(s)	54, 425, 607, 2341
TfiI	GAWTC	5 cut(s)	887, 1610, 2330, 2855, 2896
TscAI	CASTG	7 cut(s)	1452, 1573, 2088, 2391, 2509, 2710, 2725
TseFI	GTSAC	3 cut(s)	1007, 2546, 2878
TseI	GCWGC	9 cut(s)	7, 977, 1747, 1750, 2051, 2489, 2492, 2495, 2657
Tsp45I	GTSAC	3 cut(s)	1007, 2546, 2878
TspDTI	ATGAA	8 cut(s)	212, 1334, 1394, 1623, 1658, 1776, 1848, 1989
TspGWI	ACGGA	1 cut(s)	1603
TspRI	CASTG	7 cut(s)	1452, 1573, 2088, 2391, 2509, 2710, 2725
Tth111I	GACNNNGTC	2 cut(s)	83, 1171
Vha464I	CTTAAG	1 cut(s)	2162
VpaK11BI	GGWCC	3 cut(s)	1117, 2396, 2825
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	5 cut(s)	592, 679, 804, 2236, 2352
XceI	RCATGY	1 cut(s)	1340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1299
XhoI	CTCGAG	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	959
XmiI	GTMKAC	4 cut(s)	222, 489, 854, 1051
XmnI	GAANNNNTTC	2 cut(s)	1549, 2604
XspI	CTAG	6 cut(s)	809, 960, 1094, 1349, 1889, 2556
ZraI	GACGTC	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.