Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000542.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

38358 .. 38681

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000542.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaagcagttcaagaccatcggccgaaagctcgccataggctctcaaggcaccttcggccaatccaaggagttcctctacctcttgaagtccatcggcaaagccgaagaggaacgcatcgtcctccacaagatcgaaaccctaaaacgacgcctttctaagcctaacatccccaagcgcaagatgaaggagtacattacccgcctcatctatgttgaaattatcagccacaacgtgtctttcgcctacatccacgttgtcaagatgactcatgacgacaatctcatcctcaagcgaaatggcgtcttctgccttcatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

107

Amino Acids

12.57

Weight (kDa)

10.1

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	2 cut(s)	22, 58
AcyI	GRCGYC	2 cut(s)	151, 303
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	13, 88, 218
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AoxI	GGCC	2 cut(s)	22, 58
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	298
BccI	CCATC	2 cut(s)	26, 101
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	298
BpuEI	CTTGAG	2 cut(s)	30, 275
BsaHI	GRCGYC	2 cut(s)	151, 303
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	168, 249, 285
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseX3I	CGGCCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	24, 60
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	2 cut(s)	24, 60
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	24, 60
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	151, 303
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	2 cut(s)	151, 303
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	168, 249, 285
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 57, 309
BstV2I	GAAGAC	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	24, 60
BtsCI	GGATG	3 cut(s)	168, 249, 285
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	180
CseI	GACGC	2 cut(s)	159, 292
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	7 cut(s)	24, 31, 42, 60, 104, 163, 228
CviKI_1	RGCY	7 cut(s)	24, 31, 42, 60, 104, 163, 228
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	2 cut(s)	22, 58
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	275
FaiI	YATR	3 cut(s)	38, 213, 273
FatI	CATG	1 cut(s)	271
FauI	CCCGC	1 cut(s)	209
FokI	GGATG	3 cut(s)	155, 236, 272
GlaI	GCGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	24, 60
HgaI	GACGC	2 cut(s)	159, 292
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	151, 303
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	4 cut(s)	13, 85, 262, 272
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	64, 181, 323
HpyCH4IV	ACGT	2 cut(s)	234, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 57, 309
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	234, 255
Hsp92I	GRCGYC	2 cut(s)	151, 303
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	132
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	2 cut(s)	234, 255
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	2 cut(s)	119, 298
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	86, 92, 103, 134, 215, 299
MroXI	GAANNNNTTC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	48, 57, 309
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	262
SetI	ASST	5 cut(s)	33, 56, 84, 237, 258
SfaNI	GCATC	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	45, 290
SmoI	CTYRAG	2 cut(s)	45, 290
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	2 cut(s)	237, 258
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	192
TspDTI	ATGAA	3 cut(s)	17, 200, 305
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.