Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9272422 .. 9274383

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGATTATATGCAAATACATCTCTTAAGGGGCTCAGTAGCAGTGTTGGCGACCCTTTACCGACCAATAGTGATGAGTTTAATCTTGCATCTGAGTTATCAAATGCTACAAGAACTGCTCAAAGTGGGGTAACACAATTGAATAAGGGTCCTAACCCTAAAGATTCCTTGGAAAAGGATGCACTTGTAAGGCAGATGGGTGTGACCCTAAAGATTTGCTTGGTTAAAACTGTTCAGAATGGCAAACTTTCGATCATGATTGTTCGGATTATTTGCTTTGTGACCATTGCCCGGAAATTTGGTTCGTTTCGACAGCTGAACCTGGGGCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

112

Amino Acids

11.94

Weight (kDa)

9.76

Isoelectric Point (pI)

18.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	321
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	36, 330
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	292
BfrI	CTTAAG	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	292, 323
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	292, 323
BmsI	GCATC	2 cut(s)	98, 169
BpuMI	CCSGG	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	168, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	168, 322
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	49, 84
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	36, 330
Bsp143I	GATC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	48, 85
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	168, 322
BssMI	GATC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	35, 93
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	290, 321
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	149
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	3 cut(s)	34, 316, 328
CviKI_1	RGCY	3 cut(s)	34, 316, 328
DdeI	CTNAG	2 cut(s)	35, 93
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	36, 330
Eco47I	GGWCC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	36, 330
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	10, 12, 257, 334
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	1 cut(s)	255
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	36, 330
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	94, 237, 267
Hpy188III	TCNNGA	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	14, 89, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	35, 93
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	2 cut(s)	305, 308
LweI	GCATC	2 cut(s)	98, 169
MaeIII	GTNAC	3 cut(s)	130, 202, 280
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	36, 330
MluCI	AATT	2 cut(s)	137, 296
MseI	TTAA	3 cut(s)	27, 81, 225
MspA1I	CMGCKG	1 cut(s)	316
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	292, 323
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	202, 280
PagI	TCATGA	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	27, 81, 225
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	292, 323
SduI	GDGCHC	2 cut(s)	36, 330
SetI	ASST	2 cut(s)	318, 324
SfaNI	GCATC	2 cut(s)	98, 169
SgeI	CNNG	8 cut(s)	98, 123, 181, 197, 232, 268, 303, 304
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	137, 296
StyD4I	CCNGG	2 cut(s)	290, 321
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	251, 310
TasI	AATT	2 cut(s)	137, 296
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	27, 81, 225
Tru9I	TTAA	3 cut(s)	27, 81, 225
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	202, 280
Tsp45I	GTSAC	2 cut(s)	202, 280
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.