Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8165622.1

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 667

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8165622.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ccaaggcggcttcggccaatccaaggagttcctcgacctcgtcaagtccatcggcgaagctcgatccaaggccgaagaggagcgcatcgtcctccacgagatcgaaaccctaaaacgacgcctctccgagcctgacatccccaagcgcaagatgaaggagtacatcatccgcctcgtctacgtcgaaatgctcggccacgacgcgtcgttcgcttacatccacgccgtgaagatgacgcacgacgacaatctcgtcctcaagcgcaccggctacctcgccgtctcgctcttcctcaacgacgatcacgacctcatcattctcatcgtcaacaccatccagaaggacctgaagtctgacaattacctcgtcgtttgcaccgccctcaatgccgtctgcaagctcatcaacgacgagaccgtgcccgccgttttgccccaggtcgtggagctcctagggcaccagaaggaggcggtgaggaagaaggcgatcatggctcttcatcggttttatcagaagtcgccgtcgtcggtttcgcatctggtgtccaatttccggaagcggctctgtgataacgatcctggagtcatgggagccacgctgtgcccgttgttcgatctcattaccatcgatgtgaatacgtataaggatttggtggttagctttgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

222

Amino Acids

25.15

Weight (kDa)

7.23

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	6 cut(s)	7, 170, 379, 424, 471, 560
AclWI	GGATC	2 cut(s)	58, 570
AcoI	YGGCCR	2 cut(s)	14, 194
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	119
AdeI	CACNNNGTG	2 cut(s)	227, 601
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	4 cut(s)	23, 443, 467, 553
AflIII	ACRYGT	1 cut(s)	202
AhdI	GACNNNNNGTC	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	436, 578
AluBI	AGCT	4 cut(s)	60, 401, 449, 661
AluI	AGCT	4 cut(s)	60, 401, 449, 661
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	287, 408
AlwI	GGATC	2 cut(s)	58, 570
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	3 cut(s)	14, 70, 194
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspA2I	CCTAGG	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	85, 148, 265
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	344
AvrII	CCTAGG	1 cut(s)	452
BaeGI	GKGCMC	3 cut(s)	424, 460, 606
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	3 cut(s)	57, 342, 633
BceAI	ACGGC	5 cut(s)	210, 264, 375, 411, 506
BciT130I	CCWGG	2 cut(s)	438, 580
BcoDI	GTCTC	2 cut(s)	287, 408
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	8, 561
BlnI	CCTAGG	1 cut(s)	452
BlsI	GCNGC	2 cut(s)	9, 562
Bme1390I	CCNGG	2 cut(s)	438, 580
Bme18I	GGWCC	1 cut(s)	344
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	459, 593
BmrFI	CCNGG	2 cut(s)	438, 580
BmsI	GCATC	2 cut(s)	94, 545
BpmI	CTGGAG	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	5 cut(s)	2, 22, 67, 436, 452
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 443, 467, 553
Bse118I	RCCGGY	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	574
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	438, 580
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	5 cut(s)	2, 22, 67, 436, 452
BseGI	GGATG	4 cut(s)	136, 166, 217, 334
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	4 cut(s)	23, 443, 467, 553
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	3 cut(s)	424, 460, 606
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	16, 72, 196
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	268, 554
BslI	CCNNNNNNNGG	4 cut(s)	23, 443, 467, 553
BsmAI	GTCTC	2 cut(s)	287, 408
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	16, 72, 196
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	4 cut(s)	424, 451, 460, 606
Bsp13I	TCCGGA	1 cut(s)	553
Bsp143I	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
BspACI	CCGC	6 cut(s)	7, 170, 379, 424, 471, 560
BspANI	GGCC	3 cut(s)	16, 72, 196
BspDI	ATCGAT	1 cut(s)	628
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	459, 593
BspPI	GGATC	2 cut(s)	58, 570
BspQI	GCTCTTC	2 cut(s)	294, 502
BspT107I	GGYRCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	5 cut(s)	2, 22, 67, 436, 452
BssMI	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	4 cut(s)	2, 22, 67, 452
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	438, 580
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	3 cut(s)	70, 294, 502
BstACI	GRCGYC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	399, 424
BstF5I	GGATG	4 cut(s)	136, 166, 217, 334
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	85, 148, 265
BstKTI	GATC	6 cut(s)	66, 103, 305, 490, 578, 617
BstMAI	GTCTC	2 cut(s)	287, 408
BstMBI	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 210, 387, 455, 492
BstNI	CCWGG	2 cut(s)	438, 580
BstSCI	CCNGG	2 cut(s)	436, 578
BstSLI	GKGCMC	3 cut(s)	424, 460, 606
BstSNI	TACGTA	1 cut(s)	640
BstUI	CGCG	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	628
BsuRI	GGCC	3 cut(s)	16, 72, 196
BsuTUI	ATCGAT	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	136, 166, 217, 334
Cac8I	GCNNGC	2 cut(s)	399, 424
CfoI	GCGC	3 cut(s)	85, 148, 265
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	628
CseI	GACGC	4 cut(s)	127, 193, 210, 245
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	491, 587
CviQI	GTAC	1 cut(s)	161
DpnI	GATC	6 cut(s)	65, 102, 304, 489, 577, 616
DpnII	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
DraIII	CACNNNGTG	2 cut(s)	227, 601
DrdI	GACNNNNNNGTC	1 cut(s)	252
DriI	GACNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	14, 194
Eam1104I	CTCTTC	3 cut(s)	70, 294, 502
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	3 cut(s)	70, 294, 502
EciI	GGCGGA	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	449
Eco105I	TACGTA	1 cut(s)	640
Eco130I	CCWWGG	4 cut(s)	2, 22, 67, 452
Eco24I	GRGCYC	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	436, 578
EcoT14I	CCWWGG	4 cut(s)	2, 22, 67, 452
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	4 cut(s)	2, 22, 67, 452
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	494, 590
FaiI	YATR	3 cut(s)	492, 588, 643
FatI	CATG	2 cut(s)	490, 586
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	8, 561
FokI	GGATG	4 cut(s)	123, 153, 204, 321
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	2 cut(s)	8, 561
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	3 cut(s)	84, 147, 264
GluI	GCNGC	2 cut(s)	8, 561
GsuI	CTGGAG	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	16, 72, 196
HapII	CCGG	2 cut(s)	268, 554
HgaI	GACGC	4 cut(s)	127, 193, 210, 245
HhaI	GCGC	3 cut(s)	85, 148, 265
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	494, 590
Hin6I	GCGC	3 cut(s)	83, 146, 263
HinP1I	GCGC	3 cut(s)	83, 146, 263
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	2 cut(s)	268, 554
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	179, 329
Hpy188I	TCNGA	3 cut(s)	128, 356, 514
Hpy188III	TCNNGA	3 cut(s)	306, 338, 554
Hpy8I	GTNNAC	2 cut(s)	179, 329
HpyAV	CCTTC	4 cut(s)	149, 335, 458, 476
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	2 cut(s)	181, 639
HpyCH4V	TGCA	2 cut(s)	376, 397
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 210, 387, 455, 492
HpySE526I	ACGT	2 cut(s)	181, 639
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	494, 590
HspAI	GCGC	3 cut(s)	83, 146, 263
Kpn2I	TCCGGA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
LguI	GCTCTTC	2 cut(s)	294, 502
LmnI	GCTCC	4 cut(s)	80, 446, 454, 591
LweI	GCATC	2 cut(s)	94, 545
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	2 cut(s)	181, 639
MalI	GATC	6 cut(s)	65, 102, 304, 489, 577, 616
MboI	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
MboII	GAAGA	5 cut(s)	87, 242, 281, 489, 491
MhlI	GDGCHC	4 cut(s)	424, 451, 460, 606
MluCI	AATT	2 cut(s)	359, 548
MluI	ACGCGT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	553
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	2 cut(s)	268, 554
MspR9I	CCNGG	2 cut(s)	438, 580
MvaI	CCWGG	2 cut(s)	438, 580
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	13, 210, 387, 455, 492
NdeII	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
NlaIII	CATG	2 cut(s)	494, 590
NlaIV	GGNNCC	2 cut(s)	459, 593
NmeAIII	GCCGAG	1 cut(s)	172
PciSI	GCTCTTC	2 cut(s)	294, 502
PcsI	WCGNNNNNNNCGW	6 cut(s)	94, 181, 250, 304, 415, 603
PflFI	GACNNNGTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	9, 562
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Ppu21I	YACGTR	1 cut(s)	640
PpuMI	RGGWCCY	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	436, 578
PspGI	CCWGG	2 cut(s)	436, 578
PspN4I	GGNNCC	2 cut(s)	459, 593
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	39
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	630
SacI	GAGCTC	1 cut(s)	451
SapI	GCTCTTC	2 cut(s)	294, 502
SatI	GCNGC	2 cut(s)	8, 561
Sau3AI	GATC	6 cut(s)	63, 100, 302, 487, 575, 614
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	438, 580
SduI	GDGCHC	4 cut(s)	424, 451, 460, 606
SfaNI	GCATC	2 cut(s)	94, 545
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	640
Sse9I	AATT	2 cut(s)	359, 548
SsiI	CCGC	6 cut(s)	7, 170, 379, 424, 471, 560
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	436, 578
StyI	CCWWGG	4 cut(s)	2, 22, 67, 452
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	2 cut(s)	184, 642
TaqI	TCGA	6 cut(s)	34, 62, 103, 184, 613, 628
TasI	AATT	2 cut(s)	359, 548
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	2 cut(s)	10, 563
TspDTI	ATGAA	2 cut(s)	168, 489
Tth111I	GACNNNGTC	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	344
XmaJI	CCTAGG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.