Rmu_sc0005117.1_g000009

AP-4 complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005117.1
Physical Location & Seq
Reverse (-)
56691 .. 58246
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005117.1_g000009.1.cds

Sequence Viewer

Length: 1164 bp
atgtgtgggtggtgtgggtggaatggaataaaaggatatttgaggaagctaggtgtgacttgtcaggaggtgtcttccaggaatagggttcgattttgggcatctctttggcgtcaatttcttcagggtttagagattgctcgtttcaacattctttatgacagggaacctatcgataaaaacctttctttcctcaatggttatgtccaacaggcaatagaaaaaggtgctcagccatatatttctgagaatgagcgctctggaatgttaagtattaacaatttcagaagccaagatcagcatgaagctttaagtcacagtcttcagtttgaggcctatgagcttccaaagccactggtgccatcaagagttcctcgagctgcagttgcatcctcaactgaacttgttccagtgcctgaaccatcttatgctagggagacacaccagtctgcatcattgctatctgtgtctgatgcaggatcgtcagaacttaaattacgacttgatggtgttcaaaagaaatgggatggtgtgagtacttcaaattcaaaagcacgtgatacttatgacttgaggaagccatcagttgaaatttctccaaaaaagcagcagttggccagttcactttttggcggttcatcaagaaccgagaagaggacatcttcgggcaaccacaaagtgtccaaggcctctgagaagtcacaggtatcgaaggcagcaggtgcacacacagatggtgcagtggagaaaataaatcatgaacatactccagacttgcttgacttcagtgattcaacttttactagtactgctccgtctatagatcctttccagcagttggaagggcttcttgatcaagccgaagctacatcaactgtgaataatggtccagcaggtgcttcaaaaacacctgaaattatgggattatatgcagacactcctgtcagtgggttcagcagccgtgttgggaaccctgtgttgaataatagggatgactttgcatctgagttatcaaatgatacaaggacttctcaagttggggtatcacaatcgaataagggtcctaaccctaaagattcatttcaaaaggatgcacttgtaaggcagatgggcgttacccccacaagtcagaaccccaacttgtttagagatttgcttggctag

Protein Analysis

387

Amino Acids

42.37

Weight (kDa)

7.72

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 710, 884
AasI GACNNNNNNGTC 2 cut(s) 445, 941
Acc36I ACCTGC 2 cut(s) 710, 884
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 838
AciI CCGC 1 cut(s) 633
AclWI GGATC 2 cut(s) 487, 818
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 2 cut(s) 544, 591
AcuI CTGAAG 3 cut(s) 107, 308, 769
AcvI CACGTG 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 2 cut(s) 538, 808
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 84, 654, 838, 947
AgsI TTSAA 9 cut(s) 148, 515, 543, 549, 590, 795, 903, 982, 1085
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 5 cut(s) 49, 308, 343, 380, 866
AluI AGCT 5 cut(s) 49, 308, 343, 380, 866
Alw21I GWGCWC 2 cut(s) 232, 727
Alw26I GTCTC 1 cut(s) 431
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 2 cut(s) 487, 818
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 375
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 3 cut(s) 333, 615, 687
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 4 cut(s) 380, 607, 716, 957
ApoI RAATTY 2 cut(s) 544, 591
Asp700I GAANNNNTTC 2 cut(s) 405, 846
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 887, 1061
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 2 cut(s) 887, 1061
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 617
BanI GGYRCC 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 66, 314
Bbv12I GWGCWC 2 cut(s) 232, 727
BbvI GCAGC 4 cut(s) 367, 619, 728, 969
BccI CCATC 7 cut(s) 370, 430, 500, 521, 589, 728, 1102
BceAI ACGGC 1 cut(s) 945
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 4 cut(s) 50, 432, 804, 1162
BfmI CTRYAG 2 cut(s) 381, 819
BfoI RGCGCY 1 cut(s) 259
BfuAI ACCTGC 2 cut(s) 710, 884
BisI GCNGC 4 cut(s) 381, 608, 717, 958
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 4 cut(s) 382, 609, 718, 959
BmcAI AGTACT 2 cut(s) 538, 808
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 2 cut(s) 887, 1061
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 2 cut(s) 887, 1061
BmiI GGNNCC 4 cut(s) 168, 360, 971, 1062
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 6 cut(s) 110, 398, 461, 463, 1010, 1081
BpiI GAAGAC 2 cut(s) 66, 314
BpmI CTGGAG 1 cut(s) 753
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 592, 1017
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 684
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 654, 838, 947
Bse1I ACTGG 4 cut(s) 360, 410, 445, 618
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 4 cut(s) 389, 532, 997, 1096
BseLI CCNNNNNNNGG 4 cut(s) 84, 654, 838, 947
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 4 cut(s) 237, 245, 684, 996
BseNI ACTGG 4 cut(s) 360, 410, 445, 618
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 4 cut(s) 367, 619, 728, 969
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 3 cut(s) 335, 617, 689
BshNI GGYRCC 1 cut(s) 358
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 232, 727
BsiHKCI CYCGRG 1 cut(s) 375
BslI CCNNNNNNNGG 4 cut(s) 84, 654, 838, 947
BsmAI GTCTC 1 cut(s) 431
BsnI GGCC 3 cut(s) 335, 617, 689
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 232, 727
Bsp143I GATC 4 cut(s) 295, 479, 823, 853
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 1 cut(s) 633
BspANI GGCC 3 cut(s) 335, 617, 689
BspCNI CTCAG 4 cut(s) 238, 244, 685, 997
BspDI ATCGAT 1 cut(s) 174
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 4 cut(s) 168, 360, 971, 1062
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 2 cut(s) 710, 884
BspPI GGATC 2 cut(s) 487, 818
BspT107I GGYRCC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 4 cut(s) 360, 410, 445, 618
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 4 cut(s) 295, 479, 823, 853
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 320, 877
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 557
BstDEI CTNAG 4 cut(s) 231, 246, 693, 1005
BstF5I GGATG 4 cut(s) 389, 532, 997, 1096
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 4 cut(s) 298, 482, 826, 856
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 4 cut(s) 295, 479, 823, 853
BstMWI GCNNNNNNNGC 4 cut(s) 349, 358, 386, 722
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 2 cut(s) 381, 819
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 4 cut(s) 367, 619, 728, 969
BstV2I GAAGAC 2 cut(s) 66, 314
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 3 cut(s) 335, 617, 689
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 4 cut(s) 389, 532, 997, 1096
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 5 cut(s) 353, 417, 747, 793, 952
BveI ACCTGC 2 cut(s) 710, 884
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 887, 1061
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 537, 807
CviAII CATG 2 cut(s) 302, 758
CviQI GTAC 2 cut(s) 537, 807
DdeI CTNAG 4 cut(s) 231, 246, 693, 1005
DpnI GATC 4 cut(s) 297, 481, 825, 855
DpnII GATC 4 cut(s) 295, 479, 823, 853
DraIII CACNNNGTG 1 cut(s) 679
DrdI GACNNNNNNGTC 2 cut(s) 445, 941
DseDI GACNNNNNNGTC 2 cut(s) 445, 941
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 684
Eco147I AGGCCT 2 cut(s) 335, 689
Eco47I GGWCC 2 cut(s) 887, 1061
Eco47III AGCGCT 1 cut(s) 257
Eco57I CTGAAG 3 cut(s) 107, 308, 769
Eco72I CACGTG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 1061
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 2 cut(s) 305, 761
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FatI CATG 2 cut(s) 301, 757
FbaI TGATCA 1 cut(s) 853
Fnu4HI GCNGC 4 cut(s) 381, 608, 717, 958
FokI GGATG 4 cut(s) 376, 539, 1004, 1103
Fsp4HI GCNGC 4 cut(s) 381, 608, 717, 958
FspBI CTAG 4 cut(s) 50, 432, 804, 1162
GlaI GCGC 1 cut(s) 257
GluI GCNGC 4 cut(s) 381, 608, 717, 958
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 3 cut(s) 335, 617, 689
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 2 cut(s) 305, 761
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 791, 1076
Hpy166II GTNNAC 2 cut(s) 623, 725
Hpy188I TCNGA 7 cut(s) 247, 287, 472, 487, 694, 1006, 1131
Hpy188III TCNNGA 7 cut(s) 65, 261, 366, 642, 758, 770, 851
Hpy8I GTNNAC 2 cut(s) 623, 725
HpyAV CCTTC 2 cut(s) 706, 836
HpyCH4III ACNGT 2 cut(s) 320, 877
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 9 cut(s) 383, 389, 452, 476, 725, 740, 932, 1001, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 358, 386, 722
HpyF3I CTNAG 4 cut(s) 231, 246, 693, 1005
HpySE526I ACGT 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 2 cut(s) 305, 761
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 4 cut(s) 295, 479, 823, 853
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 4 cut(s) 367, 619, 728, 969
LweI GCATC 6 cut(s) 110, 398, 461, 463, 1010, 1081
MaeI CTAG 4 cut(s) 50, 432, 804, 1162
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 4 cut(s) 55, 314, 699, 1114
MalI GATC 4 cut(s) 297, 481, 825, 855
MboI GATC 4 cut(s) 295, 479, 823, 853
MboII GAAGA 5 cut(s) 66, 113, 314, 654, 664
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 232, 727
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 6 cut(s) 116, 280, 494, 544, 591, 915
MluNI TGGCCA 1 cut(s) 617
MmeI TCCRAC 2 cut(s) 232, 819
MnlI CCTC 9 cut(s) 36, 61, 203, 325, 384, 403, 567, 648, 700
Mox20I TGGCCA 1 cut(s) 617
MroXI GAANNNNTTC 2 cut(s) 405, 846
MscI TGGCCA 1 cut(s) 617
MseI TTAA 4 cut(s) 269, 276, 311, 492
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 617
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 4 cut(s) 349, 358, 386, 722
NdeII GATC 4 cut(s) 295, 479, 823, 853
NlaIII CATG 2 cut(s) 305, 761
NlaIV GGNNCC 4 cut(s) 168, 360, 971, 1062
NmuCI GTSAC 3 cut(s) 55, 314, 699
PaeR7I CTCGAG 1 cut(s) 375
PagI TCATGA 1 cut(s) 757
PaqCI CACCTGC 2 cut(s) 710, 884
PceI AGGCCT 2 cut(s) 335, 689
PdmI GAANNNNTTC 2 cut(s) 405, 846
PfeI GAWTC 2 cut(s) 791, 1076
PflMI CCANNNNNTGG 1 cut(s) 838
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 4 cut(s) 382, 609, 718, 959
PmaCI CACGTG 1 cut(s) 557
PmlI CACGTG 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 1061
Psp6I CCWGG 1 cut(s) 77
PspCI CACGTG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 4 cut(s) 168, 360, 971, 1062
PspPI GGNCC 2 cut(s) 887, 1061
PspPPI RGGWCCY 1 cut(s) 1061
PspXI VCTCGAGB 1 cut(s) 375
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 2 cut(s) 538, 808
RsaNI GTAC 2 cut(s) 537, 807
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 4 cut(s) 269, 276, 311, 492
SatI GCNGC 4 cut(s) 381, 608, 717, 958
Sau3AI GATC 4 cut(s) 295, 479, 823, 853
Sau96I GGNCC 2 cut(s) 887, 1061
ScaI AGTACT 2 cut(s) 538, 808
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 2 cut(s) 232, 727
SfaNI GCATC 6 cut(s) 110, 398, 461, 463, 1010, 1081
SfcI CTRYAG 2 cut(s) 381, 819
Sfr274I CTCGAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 887, 1061
SlaI CTCGAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 375, 571, 1032
SmoI CTYRAG 3 cut(s) 375, 571, 1032
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 6 cut(s) 116, 280, 494, 544, 591, 915
SseBI AGGCCT 2 cut(s) 335, 689
SsiI CCGC 1 cut(s) 633
SspMI CTAG 4 cut(s) 50, 432, 804, 1162
StuI AGGCCT 2 cut(s) 335, 689
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 2 cut(s) 320, 877
TaiI ACGT 1 cut(s) 559
TaqI TCGA 5 cut(s) 91, 174, 376, 710, 1052
TasI AATT 6 cut(s) 116, 280, 494, 544, 591, 915
TatI WGTACW 2 cut(s) 536, 806
TfiI GAWTC 2 cut(s) 791, 1076
Tru1I TTAA 4 cut(s) 269, 276, 311, 492
Tru9I TTAA 4 cut(s) 269, 276, 311, 492
TscAI CASTG 5 cut(s) 360, 417, 747, 793, 952
TseFI GTSAC 3 cut(s) 55, 314, 699
TseI GCWGC 4 cut(s) 380, 607, 716, 957
Tsp45I GTSAC 3 cut(s) 55, 314, 699
TspDTI ATGAA 4 cut(s) 318, 627, 774, 1068
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 5 cut(s) 360, 417, 747, 793, 952
Van91I CCANNNNNTGG 1 cut(s) 838
VneI GTGCAC 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 887, 1061
XapI RAATTY 2 cut(s) 544, 591
XhoI CTCGAG 1 cut(s) 375
XmnI GAANNNNTTC 2 cut(s) 405, 846
XspI CTAG 4 cut(s) 50, 432, 804, 1162
ZrmI AGTACT 2 cut(s) 538, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.