Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Forward (+)

32552641 .. 32553649

Gene Structure 1009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGCAGCTCAAGACCATCGGCCGGGAGCTCGCCATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAACGCATCGTCCTCCACGAGATCGAAACCCTAAAACGCCGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCGTCTACGTCGAAATGTTAGGCCACGACGCGTCGTTCGCCTACATCCATGCGGTGAAGATGACGCACGACGACAATCTCGTCTTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACTACCTCATCATTCTCATCGTCAACACCATCCAGAAGGACTTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACTACGAGACTGTTCCCGCCGTTTTTCCACAGGTTGTGGAGCTCCTAGGGCACCAGAAGGAGGCTGTGAGGAAGAAGGCGATCATGGCGCTTCATCGGTTTTATCAGAAATCGCCGTCGTCGGTTTCGCATCTGGTGTCGAATTTCCGGAAGCGGCTCTGTGATAGCGATCCTGGAGTGATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCGAGTTGCAGAGCGTAGGTTGCCTAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGGTTGGGTTGTTGAAGATTTTGGCATTGTTGGGGAGCGGGAATAAGCAATCGAGTGAGAAGATGTATATGGTAGTTGGCCACATCTTTAAGAAGTGCGATTCCACGAGTAATATAGGAAAATGCAGTTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

307

Amino Acids

34.72

Weight (kDa)

9.12

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	51 - 282	5.7e-41	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	8 cut(s)	51, 163, 214, 269, 423, 468, 604, 825
AclWI	GGATC	2 cut(s)	102, 614
AcoI	YGGCCR	3 cut(s)	22, 58, 865
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	740
AdeI	CACNNNGTG	1 cut(s)	645
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	24, 67, 511
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	304, 394, 802
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	622
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	7 cut(s)	10, 31, 104, 445, 493, 705, 769
AluI	AGCT	7 cut(s)	10, 31, 104, 445, 493, 705, 769
Alw21I	GWGCWC	2 cut(s)	33, 495
Alw26I	GTCTC	2 cut(s)	331, 452
AlwI	GGATC	2 cut(s)	102, 614
Aor13HI	TCCGGA	1 cut(s)	597
AoxI	GGCC	5 cut(s)	22, 58, 114, 238, 865
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspA2I	CCTAGG	1 cut(s)	496
AspLEI	GCGC	4 cut(s)	192, 309, 541, 778
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	2 cut(s)	504, 650
BalI	TGGCCA	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	501
BanII	GRGCYC	3 cut(s)	33, 44, 495
BauI	CACGAG	2 cut(s)	140, 892
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	33, 495
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	6 cut(s)	26, 101, 386, 625, 677, 771
BceAI	ACGGC	4 cut(s)	308, 419, 455, 550
BciT130I	CCWGG	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	331, 452
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	2 cut(s)	542, 779
BisI	GCNGC	4 cut(s)	8, 52, 163, 605
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	4 cut(s)	9, 53, 164, 606
Bme1390I	CCNGG	2 cut(s)	26, 624
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmiI	GGNNCC	3 cut(s)	43, 503, 637
BmrFI	CCNGG	2 cut(s)	26, 624
BmsI	GCATC	2 cut(s)	138, 589
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	36, 46, 66, 111, 496
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 67, 511
Bse118I	RCCGGY	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	618
BseAI	TCCGGA	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	624
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	5 cut(s)	36, 46, 66, 111, 496
BseGI	GGATG	4 cut(s)	180, 210, 261, 378
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	3 cut(s)	24, 67, 511
BseSI	GKGCMC	2 cut(s)	504, 650
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	24, 60, 116, 240, 867
BshNI	GGYRCC	1 cut(s)	501
BshVI	ATCGAT	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	33, 495
BsiSI	CCGG	3 cut(s)	25, 312, 598
BslI	CCNNNNNNNGG	3 cut(s)	24, 67, 511
BsmAI	GTCTC	2 cut(s)	331, 452
BsmBI	CGTCTC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	5 cut(s)	24, 60, 116, 240, 867
Bsp1286I	GDGCHC	5 cut(s)	33, 44, 495, 504, 650
Bsp13I	TCCGGA	1 cut(s)	597
Bsp143I	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	8 cut(s)	51, 163, 214, 269, 423, 468, 604, 825
BspANI	GGCC	5 cut(s)	24, 60, 116, 240, 867
BspDI	ATCGAT	1 cut(s)	672
BspEI	TCCGGA	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	43, 503, 637
BspPI	GGATC	2 cut(s)	102, 614
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	36, 46, 66, 111, 496
BssMI	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
BssSI	CACGAG	2 cut(s)	140, 892
BssT1I	CCWWGG	5 cut(s)	36, 46, 66, 111, 496
Bst2BI	CACGAG	2 cut(s)	140, 892
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	114, 338
BstBAI	YACGTR	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	33, 443
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	4 cut(s)	180, 210, 261, 378
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	542, 779
BstHHI	GCGC	4 cut(s)	192, 309, 541, 778
BstKTI	GATC	6 cut(s)	110, 147, 349, 534, 622, 661
BstMAI	GTCTC	2 cut(s)	331, 452
BstMBI	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	9 cut(s)	48, 57, 254, 431, 499, 536, 711, 742, 775
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	24, 622
BstSLI	GKGCMC	2 cut(s)	504, 650
BstSNI	TACGTA	1 cut(s)	684
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	5 cut(s)	24, 60, 116, 240, 867
BsuTUI	ATCGAT	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	180, 210, 261, 378
Cac8I	GCNNGC	2 cut(s)	33, 443
CfoI	GCGC	4 cut(s)	192, 309, 541, 778
Cfr10I	RCCGGY	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	3 cut(s)	237, 254, 289
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	37, 266, 535
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	6 cut(s)	109, 146, 348, 533, 621, 660
DpnII	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
DraIII	CACNNNGTG	1 cut(s)	645
DrdI	GACNNNNNNGTC	1 cut(s)	296
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	3 cut(s)	22, 58, 865
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	114, 338
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	2 cut(s)	114, 338
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	2 cut(s)	31, 493
EclXI	CGGCCG	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	5 cut(s)	36, 46, 66, 111, 496
Eco24I	GRGCYC	3 cut(s)	33, 44, 495
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	31, 493
Eco57I	CTGAAG	1 cut(s)	740
EcoICRI	GAGCTC	2 cut(s)	31, 493
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	5 cut(s)	36, 46, 66, 111, 496
EcoT38I	GRGCYC	3 cut(s)	33, 44, 495
ErhI	CCWWGG	5 cut(s)	36, 46, 66, 111, 496
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	3 cut(s)	40, 269, 538
FaiI	YATR	9 cut(s)	38, 267, 536, 687, 756, 855, 857, 902, 922
FatI	CATG	3 cut(s)	36, 265, 534
FauI	CCCGC	2 cut(s)	475, 818
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	8, 52, 163, 605
FokI	GGATG	4 cut(s)	167, 197, 248, 365
FriOI	GRGCYC	3 cut(s)	33, 44, 495
Fsp4HI	GCNGC	4 cut(s)	8, 52, 163, 605
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	4 cut(s)	191, 308, 540, 777
GluI	GCNGC	4 cut(s)	8, 52, 163, 605
GsuI	CTGGAG	1 cut(s)	645
HaeII	RGCGCY	2 cut(s)	542, 779
HaeIII	GGCC	5 cut(s)	24, 60, 116, 240, 867
HapII	CCGG	3 cut(s)	25, 312, 598
HgaI	GACGC	3 cut(s)	237, 254, 289
HhaI	GCGC	4 cut(s)	192, 309, 541, 778
Hin1II	CATG	3 cut(s)	40, 269, 538
Hin6I	GCGC	4 cut(s)	190, 307, 539, 776
HinP1I	GCGC	4 cut(s)	190, 307, 539, 776
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	887
HpaII	CCGG	3 cut(s)	25, 312, 598
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	223, 373
Hpy188I	TCNGA	4 cut(s)	172, 400, 558, 720
Hpy188III	TCNNGA	3 cut(s)	13, 382, 598
Hpy8I	GTNNAC	2 cut(s)	223, 373
Hpy99I	CGWCG	8 cut(s)	230, 248, 253, 290, 347, 416, 571, 574
HpyAV	CCTTC	4 cut(s)	193, 379, 502, 520
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	225, 683
HpyCH4V	TGCA	4 cut(s)	420, 441, 731, 912
HpyF10VI	GCNNNNNNNGC	9 cut(s)	48, 57, 254, 431, 499, 536, 711, 742, 775
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	2 cut(s)	225, 683
Hsp92II	CATG	3 cut(s)	40, 269, 538
HspAI	GCGC	4 cut(s)	190, 307, 539, 776
Kpn2I	TCCGGA	1 cut(s)	597
Kzo9I	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	7 cut(s)	4, 28, 47, 490, 498, 635, 822
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	138, 589
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	2 cut(s)	225, 683
MalI	GATC	6 cut(s)	109, 146, 348, 533, 621, 660
MbiI	CCGCTC	1 cut(s)	825
MboI	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
MboII	GAAGA	7 cut(s)	131, 286, 292, 325, 535, 814, 859
MhlI	GDGCHC	5 cut(s)	33, 44, 495, 504, 650
MlsI	TGGCCA	1 cut(s)	867
MluCI	AATT	2 cut(s)	403, 592
MluI	ACGCGT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	867
Mox20I	TGGCCA	1 cut(s)	867
MroI	TCCGGA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	867
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	867
MspI	CCGG	3 cut(s)	25, 312, 598
MspR9I	CCNGG	2 cut(s)	26, 624
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	9 cut(s)	48, 57, 254, 431, 499, 536, 711, 742, 775
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
NlaIII	CATG	3 cut(s)	40, 269, 538
NlaIV	GGNNCC	3 cut(s)	43, 503, 637
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 225, 294, 647
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	887
PflFI	GACNNNGTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	9, 53, 164, 606
Ppu21I	YACGTR	1 cut(s)	684
Psp124BI	GAGCTC	2 cut(s)	33, 495
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	43, 503, 637
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	2 cut(s)	33, 495
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	4 cut(s)	8, 52, 163, 605
Sau3AI	GATC	6 cut(s)	107, 144, 346, 531, 619, 658
ScrFI	CCNGG	2 cut(s)	26, 624
SduI	GDGCHC	5 cut(s)	33, 44, 495, 504, 650
SfaNI	GCATC	2 cut(s)	138, 589
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SnaBI	TACGTA	1 cut(s)	684
Sse9I	AATT	2 cut(s)	403, 592
SsiI	CCGC	8 cut(s)	51, 163, 214, 269, 423, 468, 604, 825
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	2 cut(s)	33, 495
StyD4I	CCNGG	2 cut(s)	24, 622
StyI	CCWWGG	5 cut(s)	36, 46, 66, 111, 496
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	2 cut(s)	228, 686
TaqI	TCGA	8 cut(s)	78, 106, 147, 228, 590, 657, 672, 839
TasI	AATT	2 cut(s)	403, 592
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	3 cut(s)	54, 165, 607
TfiI	GAWTC	1 cut(s)	887
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	212, 533
Tth111I	GACNNNGTC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.