Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

21629589 .. 21632690

Gene Structure 3102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGATGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAATTCGTGCTGGCTATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAAGAGGAGGCGACAGTAAAAAGAGAGAGAGAGAAGAGAACAGGGAAACAAGAGAAAGAAGAAAGAAGAAGAAGACGGGAAGCTGTGTGTGTTTTCTTTGATCAGTTGATTGTGTTAGACGGAATTTTGTATTGTTTCACTGCCATTGTTCTCCTGCACTGGGAACAGTGTGCTATCAGCTTCTGTTACTTTGGATTCAGATTCCAGGGAGAAACAAGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGGTTGCTGCTCATAATTTTGCTCCTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGTCATCCATGGAGAAGTGGAAGTTGCAAATATCATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.92

Weight (kDa)

7.95

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 55	1.6e-06	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	106, 109, 111, 506
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	3 cut(s)	165, 209, 369
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	2 cut(s)	329, 426
AluI	AGCT	2 cut(s)	329, 426
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	479, 512
ApoI	RAATTY	3 cut(s)	165, 209, 369
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	16, 200
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	491, 499
BccI	CCATC	2 cut(s)	108, 563
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	2 cut(s)	566, 625
BisI	GCNGC	3 cut(s)	109, 480, 513
BlsI	GCNGC	3 cut(s)	110, 481, 514
Bme1390I	CCNGG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	38, 47
BsaBI	GATNNNNATC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	109, 451, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	109, 451, 593
BseGI	GGATG	3 cut(s)	44, 119, 589
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	491, 499
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	346, 574
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	4 cut(s)	106, 109, 111, 506
BspANI	GGCC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	471
BsrBI	CCGCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	109, 451, 593
BssMI	GATC	2 cut(s)	346, 574
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	593
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	3 cut(s)	200, 262, 414
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	2 cut(s)	109, 593
BstF5I	GGATG	3 cut(s)	44, 119, 589
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	349, 577
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	346, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	491, 499
BstV2I	GAAGAC	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	2 cut(s)	109, 593
BtsCI	GGATG	3 cut(s)	44, 119, 589
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	4 cut(s)	196, 384, 403, 419
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	5 cut(s)	139, 145, 471, 594, 620
CviJI	RGCY	5 cut(s)	68, 177, 329, 426, 482
CviKI_1	RGCY	5 cut(s)	68, 177, 329, 426, 482
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	348, 576
DpnII	GATC	2 cut(s)	346, 574
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	5 cut(s)	142, 148, 474, 597, 623
FatI	CATG	5 cut(s)	138, 144, 470, 593, 619
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	109, 480, 513
FokI	GGATG	3 cut(s)	51, 126, 576
Fsp4HI	GCNGC	3 cut(s)	109, 480, 513
FspBI	CTAG	2 cut(s)	566, 625
GluI	GCNGC	3 cut(s)	109, 480, 513
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	5 cut(s)	142, 148, 474, 597, 623
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	230, 441, 447
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	16, 200
Hpy166II	GTNNAC	4 cut(s)	100, 160, 203, 244
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	5 cut(s)	26, 36, 234, 493, 566
Hpy8I	GTNNAC	4 cut(s)	100, 160, 203, 244
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	3 cut(s)	200, 262, 414
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	148, 403, 474, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	142, 148, 474, 597, 623
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	346, 574
LmnI	GCTCC	3 cut(s)	19, 503, 532
Lsp1109I	GCAGC	2 cut(s)	491, 499
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	566, 625
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	348, 576
MbiI	CCGCTC	1 cut(s)	506
MboI	GATC	2 cut(s)	346, 574
MboII	GAAGA	8 cut(s)	94, 97, 239, 292, 317, 324, 327, 330
MluCI	AATT	5 cut(s)	165, 209, 237, 369, 520
MnlI	CCTC	3 cut(s)	148, 244, 247
Mph1103I	ATGCAT	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	2 cut(s)	346, 574
NlaIII	CATG	5 cut(s)	142, 148, 474, 597, 623
NsiI	ATGCAT	1 cut(s)	476
NspI	RCATGY	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	230, 441, 447
PkrI	GCNGC	3 cut(s)	110, 481, 514
Psp6I	CCWGG	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	112
SatI	GCNGC	3 cut(s)	109, 480, 513
Sau3AI	GATC	2 cut(s)	346, 574
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	452
SetI	ASST	5 cut(s)	159, 208, 331, 428, 467
SfaNI	GCATC	1 cut(s)	31
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	165, 209, 237, 369, 520
SsiI	CCGC	4 cut(s)	106, 109, 111, 506
SspMI	CTAG	2 cut(s)	566, 625
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	3 cut(s)	200, 262, 414
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	233
TasI	AATT	5 cut(s)	165, 209, 237, 369, 520
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	230, 441, 447
TscAI	CASTG	4 cut(s)	203, 391, 410, 419
TseI	GCWGC	2 cut(s)	479, 512
TspDTI	ATGAA	3 cut(s)	62, 155, 526
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	4 cut(s)	203, 391, 410, 419
XapI	RAATTY	3 cut(s)	165, 209, 369
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	566, 625
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.