Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001658

Physical Location & Seq

Genomic Coordinates Reverse (-)

36923807 .. 36934389

Gene Structure 10583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2886 bp

ATGGGCTCCCAAGGCGGCTTCGGCCAATCCAAGGAGTTCCTCGACCTCGTCAAGTCCATCGGCGAAGCTCGATCCAAGGCCGAAGAGGAGCGCATCGTCCTCCACGAGATCGAAACCCTAAAACGACGCCTCTCCGAGCCTGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTTGTCTACGTCGAAATGCTCGGCCACGACGCGTCGTTCGCTTACATCCACGCCGTGAAAATGACGCACGACGACAATCTCGTCCTCAAGCGCACCGGCTACCTCGCCGTCTCGCTCTTCCTCAACGACGATCACGACCTCATCATCCTCATCGTCAACACCATCCAGAAGGACTTGAAGTCTGACAATTACCTCGTCGTTTGCACCGCCCTCAATGCCGTCTGCAAGCTCATCAACGACGAGACCGTGCCCGCCGTTTTGCCCCAGGTCGTGGAGCTCCTAGGGCACCAGAAGGAGGCGGTGAGGAAGAAGGCGATCATGGCTCTTCATCGGTTTTATCAGAAGTCGCCGTCGTCGGTTTCGCATCTGGTGTCCAATTTCCGGAAGCGGCTCTGTGATAACGATCCTGGAGTCATGGGAGCCACGCTGTGCCCGTTGTTCGATCTCATTACCATCGATGTGAATACGTATAAGGATTTGGTGGTTAGCTTTGTGAGCATTCTGAAGCAAGTTGCAGAGCGTAGGTTGCCCAAGACCTATGACTACCATCAGCTTCCAGCGCCCTTTATTCAGATTAGGTTGTTGAAGATTTTGGCATTGTTGGGGAGCGGGGATAAGCAATCGAGTGAGAAGATGTATATGGTAGTCGGCGACATATTTAAGAAGTGCGATTCCGCGAGTAATATAGGAAATGCAGTTCTTTATGAGTGTATTTGTTGCGTTTCGGCAATATATCCTAATCCAAAGTTGTTAGAACAGGCTGCTCAAGTCATCTCAAGATTTTTGAAGAGTGACAGTCATAATTTGAAATATATGGGCATTGATGCTCTTGGTCGACTGATAAAGATCAGTCCGGAGATAGCTGAGCAACACCAGTTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTTTGAAGCGAAAAACATTTGAACTTTTATACAAGATGACCAAGTCTTCCAATGTGGAGGTTATTGTTGACCGTATGATTGATTACATGATAAGCCTTAATGATAACCATTACAAAACATATATAGCATCTCGGTGCGTGGAGCTTGCTGAGCAATTTGCTCCAAGCAATCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAACATGCGGGAGATTTGGTGAATGTTAAGGTGGCACATAACTTGATGAAATTGATTGCCGAGGGATTTGGAGAGGATGACGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCATCTGTATTTCTTCAGGTCATTTGTTGGGTTTTGGGGGAATATGGAACTGCTGATGGAAAGTATTCTGCTTCATATATCACTGGGAAGTTATGTGATGTGGCAGAGGCATATTCAAATGATGAAACTGTCAAGGCTTATGCTGTTACAGCAATCATGAAAATATATGCATTTGAAATATCAGCTGGAAGAAAAGTGGATATGCTACCTGAGTGTCAATCATTGGTGGAGGAATTATCAGCTTCTCACTCAACAGATCTCCAGCAGCGTGCATATGAATTGCAAGCTGTCATGGGCATAGATGCTCATGCCATTGAGAGTATTATGCCATCAGATGCAAGTTGTGAAGACATTGAGATCGATAAAAACCTTTCATTCCTCAATGGTTATGTCCAACAGGCAATAGAAAAAGGTGCTCAGCCATATATTTCTGAGAATGAGCGCTCTGGAATGTCAAGTATTAACAATTTCAGAAGCCAAGATCAGCATGAAGCTTTAAGTCACAGTCTTCGGTTTGAGGCCTATGAGCTTCCAAAGCCACTGGTGCCATCAAGAGTTCCTCCAGCTGCAGTTGCATCCTCAACTGAACTTGTTCCAGTGCCTGAACCATCTTATGCTAGGGAGACACACCAGTCTACATCATTGCCATCTGTGTCAGATGCAGGATCGTCAGAACTTAAATTACGACTTGATGGTGTTCAAAAGAAATGGGGTAGGCCTACATATTCATCTTCTGCATCTTCGACCTCAACTTCTAGTTCCCACAAAACGACAAACGGGATCACGCAGGTAGATGGTGTCAGTACTTCAAATTCAAAAGCACGTGATACTTATGACTTGAGGAAGCCATCAATTGAAATTTCTCCAGAAAAGCAGAAGTTGGCCAGTTCACTTTTTGGCGGTTCATCAAGAACCGAGAAGAGGCCATCTTCGGGCAACCATAAAGTGTCCAAGGCCGCCGAGAAGTCGCAGGTATCGAAGGCAGCAGGTGCACACACTGACGCTGCAGTGGAGAAAACAAATCATGAACCTACTCCAGACTTGCTTGACTTCAGTGATTCAACTGTTACTAGTACTGCTCCGTCTATAGATCCTTTCCAGCAGTTGGAAGGGCTTCTTGATCAAACCGAAGCTACAACAACGGTGAATAATGGTCCAGCAGGTGCTTCAAAGACACCTGAAATTATGGGATTATATGCTGATACTCCTGTCAGTGGGCTCAGTAGCAGTGTTGGGAACCCTGTGTTGACCAATAGGGATGACTTTAATCTTGCATCTGAGTTATCAAATGCTACAAGGACTTCTCAAGTTGGGGTATCACAATCGAATAAGGGTCCTAACCCTAAAGATTCATTGGAAAAGGATGCACTTGTAAGGCAGATGGGCGTTACCCCCACAAGTCAGAACCCCAACTTGTTTAGAGATTTGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

961

Amino Acids

105.78

Weight (kDa)

5.68

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	39 - 580	3.1e-84	Adaptin N terminal region
Cnd1	PF12717	128 - 288	2.6e-06	non-SMC mitotic condensation complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31730
fragaria_vesca	FvH4_5g19200 FvH4_5g25110 FvH4_5g25110 FvH4_5g25110
malus_domestica	MD02G1267100.v1.1 MD07G1052000.v1.1
prunus_persica	Prupe.2G018400_v2.0.a1 Prupe.2G055800_v2.0.a1 Prupe.2G056200_v2.0.a1 Prupe.2G057700_v2.0.a1 Prupe.2G066700_v2.0.a1 Prupe.2G068200_v2.0.a1
pyrus_communis	pycom02g22880 pycom02g22890 pycom02g22910 pycom07g04030 pycom15g15900
rosa_chinensis	RchiOBHm_Chr1g0351661 RchiOBHm_Chr4g0407221 RchiOBHm_Chr7g0215311
rosa_laevigata	RLG00000002671
rosa_multiflora	Rmu_co8017010.1_g000001 Rmu_co8035246.1_g000001 Rmu_co8165622.1_g000001 Rmu_co8288873.1_g000001 Rmu_sc0000355.1_g000018 Rmu_sc0000542.1_g000006 Rmu_sc0004129.1_g000014 Rmu_sc0005117.1_g000009 Rmu_sc0014840.1_g000006 Rmu_sc0015060.1_g000010 Rmu_sc0015060.1_g000011 Rmu_sc0018122.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244290
rosa_rugosa	Rorug06G0151000 Rorug07G0152000
rosa_samantha	Rh1CG270800 Rh2AG294700 Rh7AG288800 Rh7AG297700 Rh7AG297900 Rh7BG280800 Rh7CG308600 Rh7CG317900 Rh7DG292400
rosa_wichuraiana	Rw7G024690 Rw7G025350 Rw7G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2426, 2600
AasI	GACNNNNNNGTC	2 cut(s)	260, 2080
Acc16I	TGCGCA	1 cut(s)	1427
Acc36I	ACCTGC	4 cut(s)	2227, 2410, 2426, 2600
AccB1I	GGYRCC	2 cut(s)	465, 1993
AccB7I	CCANNNNNTGG	2 cut(s)	451, 2554
AccBSI	CCGCTC	1 cut(s)	789
AccI	GTMKAC	3 cut(s)	186, 1015, 2084
AccII	CGCG	2 cut(s)	212, 857
AccIII	TCCGGA	2 cut(s)	561, 1033
AclWI	GGATC	5 cut(s)	66, 578, 2122, 2237, 2534
AcoI	YGGCCR	3 cut(s)	22, 202, 2331
AcsI	RAATTY	2 cut(s)	2260, 2307
AcuI	CTGAAG	3 cut(s)	704, 1448, 2485
AcvI	CACGTG	1 cut(s)	2273
AcyI	GRCGYC	1 cut(s)	127
AdeI	CACNNNGTG	2 cut(s)	235, 609
AfaI	GTAC	3 cut(s)	170, 2254, 2524
AfeI	AGCGCT	1 cut(s)	1892
AfiI	CCNNNNNNNGG	8 cut(s)	31, 451, 475, 561, 2370, 2381, 2554, 2663
AflIII	ACRYGT	1 cut(s)	210
AhdI	GACNNNNNGTC	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	2519
AjnI	CCWGG	2 cut(s)	444, 586
AloI	GAACNNNNNNTCC	2 cut(s)	861, 893
Alw21I	GWGCWC	3 cut(s)	459, 1867, 2443
Alw26I	GTCTC	3 cut(s)	295, 416, 2066
Alw44I	GTGCAC	1 cut(s)	2439
AlwI	GGATC	5 cut(s)	66, 578, 2122, 2237, 2534
AlwNI	CAGNNNCTG	1 cut(s)	2051
Aor13HI	TCCGGA	2 cut(s)	561, 1033
Aor51HI	AGCGCT	1 cut(s)	1892
AoxI	GGCC	8 cut(s)	22, 78, 202, 1968, 2165, 2331, 2372, 2403
ApaLI	GTGCAC	1 cut(s)	2439
ApeKI	GCWGC	5 cut(s)	941, 1714, 2015, 2432, 2453
ApoI	RAATTY	2 cut(s)	2260, 2307
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	3 cut(s)	1513, 2040, 2562
AspA2I	CCTAGG	1 cut(s)	460
AspLEI	GCGC	6 cut(s)	93, 156, 273, 742, 1428, 1893
AspS9I	GGNCC	3 cut(s)	1081, 2603, 2783
AsuHPI	GGTGA	3 cut(s)	493, 1327, 2605
AvaII	GGWCC	3 cut(s)	1081, 2603, 2783
AvrII	CCTAGG	1 cut(s)	460
BaeGI	GKGCMC	4 cut(s)	432, 468, 614, 2443
BaeI	ACNNNNGTAYC	2 cut(s)	2643, 2676
BalI	TGGCCA	1 cut(s)	2333
BanI	GGYRCC	2 cut(s)	465, 1993
BanII	GRGCYC	3 cut(s)	8, 459, 2670
BauI	CACGAG	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	2273
BbsI	GAAGAC	3 cut(s)	1131, 1803, 1949
Bbv12I	GWGCWC	3 cut(s)	459, 1867, 2443
BbvI	GCAGC	5 cut(s)	928, 1726, 2002, 2440, 2444
BceAI	ACGGC	5 cut(s)	218, 272, 383, 419, 514
BciT130I	CCWGG	2 cut(s)	446, 588
BclI	TGATCA	1 cut(s)	2569
BcoDI	GTCTC	3 cut(s)	295, 416, 2066
BcuI	ACTAGT	1 cut(s)	2519
BfaI	CTAG	5 cut(s)	461, 2067, 2205, 2520, 2884
BfmI	CTRYAG	4 cut(s)	1383, 2016, 2454, 2535
BfoI	RGCGCY	2 cut(s)	743, 1894
BfuAI	ACCTGC	4 cut(s)	2227, 2410, 2426, 2600
BglII	AGATCT	1 cut(s)	1705
BisI	GCNGC	8 cut(s)	16, 569, 942, 1715, 2016, 2406, 2433, 2454
BlnI	CCTAGG	1 cut(s)	460
BlpI	GCTNAGC	3 cut(s)	1044, 1242, 1866
BlsI	GCNGC	8 cut(s)	17, 570, 943, 1716, 2017, 2407, 2434, 2455
BmcAI	AGTACT	2 cut(s)	2254, 2524
Bme1390I	CCNGG	2 cut(s)	446, 588
Bme18I	GGWCC	3 cut(s)	1081, 2603, 2783
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	1081, 2603, 2783
BmiI	GGNNCC	7 cut(s)	7, 467, 601, 1083, 1995, 2687, 2784
BmrFI	CCNGG	2 cut(s)	446, 588
BmrI	ACTGGG	1 cut(s)	1542
BmuI	ACTGGG	1 cut(s)	1542
BpiI	GAAGAC	3 cut(s)	1131, 1803, 1949
BpmI	CTGGAG	5 cut(s)	609, 1694, 1995, 2298, 2469
Bpu1102I	GCTNAGC	3 cut(s)	1044, 1242, 1866
BpuEI	CTTGAG	5 cut(s)	251, 930, 940, 2308, 2739
Bsa29I	ATCGAT	2 cut(s)	636, 1809
BsaAI	YACGTR	2 cut(s)	648, 2273
BsaBI	GATNNNNATC	2 cut(s)	582, 1025
BsaHI	GRCGYC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	7 cut(s)	10, 30, 75, 444, 460, 1356, 2400
BsaWI	WCCGGW	2 cut(s)	561, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	1299, 1329
Bsc4I	CCNNNNNNNGG	8 cut(s)	31, 451, 475, 561, 2370, 2381, 2554, 2663
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	6 cut(s)	1054, 1537, 1995, 2045, 2080, 2334
Bse3DI	GCAATG	1 cut(s)	2090
Bse8I	GATNNNNATC	2 cut(s)	582, 1025
BseAI	TCCGGA	2 cut(s)	561, 1033
BseBI	CCWGG	2 cut(s)	446, 588
BseCI	ATCGAT	2 cut(s)	636, 1809
BseDI	CCNNGG	7 cut(s)	10, 30, 75, 444, 460, 1356, 2400
BseGI	GGATG	9 cut(s)	144, 174, 225, 324, 342, 1378, 2024, 2713, 2818
BseJI	GATNNNNATC	2 cut(s)	582, 1025
BseLI	CCNNNNNNNGG	8 cut(s)	31, 451, 475, 561, 2370, 2381, 2554, 2663
BseMI	GCAATG	1 cut(s)	2090
BseMII	CTCAG	7 cut(s)	1035, 1233, 1650, 1872, 1880, 2683, 2718
BseNI	ACTGG	6 cut(s)	1054, 1537, 1995, 2045, 2080, 2334
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	4 cut(s)	432, 468, 614, 2443
BseXI	GCAGC	5 cut(s)	928, 1726, 2002, 2440, 2444
Bsh1236I	CGCG	2 cut(s)	212, 857
BshFI	GGCC	8 cut(s)	24, 80, 204, 1970, 2167, 2333, 2374, 2405
BshNI	GGYRCC	2 cut(s)	465, 1993
BshVI	ATCGAT	2 cut(s)	636, 1809
BsiHKAI	GWGCWC	3 cut(s)	459, 1867, 2443
BsiSI	CCGG	3 cut(s)	276, 562, 1034
BslI	CCNNNNNNNGG	8 cut(s)	31, 451, 475, 561, 2370, 2381, 2554, 2663
BsmAI	GTCTC	3 cut(s)	295, 416, 2066
BsmBI	CGTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	8 cut(s)	24, 80, 204, 1970, 2167, 2333, 2374, 2405
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	8 cut(s)	8, 432, 459, 468, 614, 1867, 2443, 2670
Bsp13I	TCCGGA	2 cut(s)	561, 1033
Bsp1720I	GCTNAGC	3 cut(s)	1044, 1242, 1866
BspANI	GGCC	8 cut(s)	24, 80, 204, 1970, 2167, 2333, 2374, 2405
BspCNI	CTCAG	7 cut(s)	1036, 1234, 1651, 1873, 1879, 2682, 2719
BspDI	ATCGAT	2 cut(s)	636, 1809
BspEI	TCCGGA	2 cut(s)	561, 1033
BspFNI	CGCG	2 cut(s)	212, 857
BspHI	TCATGA	2 cut(s)	1605, 2473
BspLI	GGNNCC	7 cut(s)	7, 467, 601, 1083, 1995, 2687, 2784
BspMAI	CTGCAG	3 cut(s)	1387, 2020, 2458
BspMI	ACCTGC	4 cut(s)	2227, 2410, 2426, 2600
BspPI	GGATC	5 cut(s)	66, 578, 2122, 2237, 2534
BspQI	GCTCTTC	2 cut(s)	302, 510
BspT107I	GGYRCC	2 cut(s)	465, 1993
BspTNI	GGTCTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	2090
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	6 cut(s)	1054, 1537, 1995, 2045, 2080, 2334
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	7 cut(s)	10, 30, 75, 444, 460, 1356, 2400
BssNI	GRCGYC	1 cut(s)	127
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	5 cut(s)	10, 30, 75, 460, 2400
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	446, 588
Bst4CI	ACNGT	7 cut(s)	427, 977, 1166, 1579, 1955, 2515, 2593
Bst6I	CTCTTC	5 cut(s)	78, 302, 510, 962, 2363
BstACI	GRCGYC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	2438
BstBAI	YACGTR	2 cut(s)	648, 2273
BstC8I	GCNNGC	5 cut(s)	407, 432, 1239, 1719, 1734
BstDEI	CTNAG	8 cut(s)	1044, 1075, 1242, 1659, 1866, 1881, 2669, 2727
BstF5I	GGATG	9 cut(s)	144, 174, 225, 324, 342, 1378, 2024, 2713, 2818
BstFNI	CGCG	2 cut(s)	212, 857
BstH2I	RGCGCY	2 cut(s)	743, 1894
BstHHI	GCGC	6 cut(s)	93, 156, 273, 742, 1428, 1893
BstMAI	GTCTC	3 cut(s)	295, 416, 2066
BstNI	CCWGG	2 cut(s)	446, 588
BstNSI	RCATGY	1 cut(s)	1304
BstSCI	CCNGG	2 cut(s)	444, 586
BstSFI	CTRYAG	4 cut(s)	1383, 2016, 2454, 2535
BstSLI	GKGCMC	4 cut(s)	432, 468, 614, 2443
BstSNI	TACGTA	1 cut(s)	648
BstUI	CGCG	2 cut(s)	212, 857
BstV1I	GCAGC	5 cut(s)	928, 1726, 2002, 2440, 2444
BstV2I	GAAGAC	3 cut(s)	1131, 1803, 1949
BstX2I	RGATCY	2 cut(s)	1705, 2539
BstYI	RGATCY	2 cut(s)	1705, 2539
Bsu15I	ATCGAT	2 cut(s)	636, 1809
BsuRI	GGCC	8 cut(s)	24, 80, 204, 1970, 2167, 2333, 2374, 2405
BsuTUI	ATCGAT	2 cut(s)	636, 1809
BtsCI	GGATG	9 cut(s)	144, 174, 225, 324, 342, 1378, 2024, 2713, 2818
BtsI	GCAGTG	2 cut(s)	2463, 2683
BtsIMutI	CAGTG	8 cut(s)	1530, 1988, 2052, 2445, 2463, 2509, 2668, 2683
BveI	ACCTGC	4 cut(s)	2227, 2410, 2426, 2600
Cac8I	GCNNGC	5 cut(s)	407, 432, 1239, 1719, 1734
CaiI	CAGNNNCTG	1 cut(s)	2051
CciI	TCATGA	2 cut(s)	1605, 2473
CfoI	GCGC	6 cut(s)	93, 156, 273, 742, 1428, 1893
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	1081, 2603, 2783
ClaI	ATCGAT	2 cut(s)	636, 1809
CseI	GACGC	5 cut(s)	135, 201, 218, 253, 2459
Csp6I	GTAC	3 cut(s)	169, 2253, 2523
CviQI	GTAC	3 cut(s)	169, 2253, 2523
DdeI	CTNAG	8 cut(s)	1044, 1075, 1242, 1659, 1866, 1881, 2669, 2727
DraIII	CACNNNGTG	2 cut(s)	235, 609
DrdI	GACNNNNNNGTC	2 cut(s)	260, 2080
DriI	GACNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	2 cut(s)	260, 2080
EaeI	YGGCCR	3 cut(s)	22, 202, 2331
Eam1104I	CTCTTC	5 cut(s)	78, 302, 510, 962, 2363
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	5 cut(s)	78, 302, 510, 962, 2363
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	457
Eco105I	TACGTA	1 cut(s)	648
Eco130I	CCWWGG	5 cut(s)	10, 30, 75, 460, 2400
Eco147I	AGGCCT	2 cut(s)	1970, 2167
Eco24I	GRGCYC	3 cut(s)	8, 459, 2670
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	3 cut(s)	1081, 2603, 2783
Eco47III	AGCGCT	1 cut(s)	1892
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	704, 1448, 2485
Eco72I	CACGTG	1 cut(s)	2273
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	2 cut(s)	1081, 2783
EcoRII	CCWGG	2 cut(s)	444, 586
EcoT14I	CCWWGG	5 cut(s)	10, 30, 75, 460, 2400
EcoT22I	ATGCAT	1 cut(s)	1621
EcoT38I	GRGCYC	3 cut(s)	8, 459, 2670
ErhI	CCWWGG	5 cut(s)	10, 30, 75, 460, 2400
Esp3I	CGTCTC	1 cut(s)	295
FalI	AAGNNNNNCTT	2 cut(s)	2550, 2582
FauI	CCCGC	3 cut(s)	439, 782, 1297
FauNDI	CATATG	1 cut(s)	1723
FbaI	TGATCA	1 cut(s)	2569
FblI	GTMKAC	3 cut(s)	186, 1015, 2084
Fnu4HI	GCNGC	8 cut(s)	16, 569, 942, 1715, 2016, 2406, 2433, 2454
FokI	GGATG	9 cut(s)	131, 161, 212, 311, 329, 1385, 2011, 2720, 2825
FriOI	GRGCYC	3 cut(s)	8, 459, 2670
Fsp4HI	GCNGC	8 cut(s)	16, 569, 942, 1715, 2016, 2406, 2433, 2454
FspBI	CTAG	5 cut(s)	461, 2067, 2205, 2520, 2884
FspI	TGCGCA	1 cut(s)	1427
GlaI	GCGC	6 cut(s)	92, 155, 272, 741, 1427, 1892
GluI	GCNGC	8 cut(s)	16, 569, 942, 1715, 2016, 2406, 2433, 2454
GsuI	CTGGAG	5 cut(s)	609, 1694, 1995, 2298, 2469
HaeII	RGCGCY	2 cut(s)	743, 1894
HaeIII	GGCC	8 cut(s)	24, 80, 204, 1970, 2167, 2333, 2374, 2405
HapII	CCGG	3 cut(s)	276, 562, 1034
HgaI	GACGC	5 cut(s)	135, 201, 218, 253, 2459
HhaI	GCGC	6 cut(s)	93, 156, 273, 742, 1428, 1893
Hin1I	GRCGYC	1 cut(s)	127
Hin6I	GCGC	6 cut(s)	91, 154, 271, 740, 1426, 1891
HinP1I	GCGC	6 cut(s)	91, 154, 271, 740, 1426, 1891
HincII	GTYRAC	4 cut(s)	337, 1016, 1162, 2697
HindII	GTYRAC	4 cut(s)	337, 1016, 1162, 2697
HindIII	AAGCTT	2 cut(s)	1445, 1941
HinfI	GANTC	5 cut(s)	591, 851, 1415, 2507, 2798
HpaII	CCGG	3 cut(s)	276, 562, 1034
HphI	GGTGA	3 cut(s)	493, 1327, 2605
Hpy166II	GTNNAC	8 cut(s)	187, 337, 1016, 1162, 2085, 2339, 2441, 2697
Hpy8I	GTNNAC	8 cut(s)	187, 337, 1016, 1162, 2085, 2339, 2441, 2697
HpyAV	CCTTC	6 cut(s)	157, 343, 466, 484, 2422, 2552
HpyCH4III	ACNGT	7 cut(s)	427, 977, 1166, 1579, 1955, 2515, 2593
HpyCH4IV	ACGT	3 cut(s)	189, 647, 2272
HpyF3I	CTNAG	8 cut(s)	1044, 1075, 1242, 1659, 1866, 1881, 2669, 2727
HpySE526I	ACGT	3 cut(s)	189, 647, 2272
Hsp92I	GRCGYC	1 cut(s)	127
HspAI	GCGC	6 cut(s)	91, 154, 271, 740, 1426, 1891
Kpn2I	TCCGGA	2 cut(s)	561, 1033
Ksp22I	TGATCA	1 cut(s)	2569
LguI	GCTCTTC	2 cut(s)	302, 510
LmnI	GCTCC	9 cut(s)	11, 88, 454, 462, 599, 786, 1234, 1258, 2533
Lsp1109I	GCAGC	5 cut(s)	928, 1726, 2002, 2440, 2444
MaeI	CTAG	5 cut(s)	461, 2067, 2205, 2520, 2884
MaeII	ACGT	3 cut(s)	189, 647, 2272
MaeIII	GTNAC	5 cut(s)	971, 1594, 1949, 2515, 2836
MbiI	CCGCTC	1 cut(s)	789
MfeI	CAATTG	1 cut(s)	2301
MflI	RGATCY	2 cut(s)	1705, 2539
MhlI	GDGCHC	8 cut(s)	8, 432, 459, 468, 614, 1867, 2443, 2670
MlsI	TGGCCA	1 cut(s)	2333
MluI	ACGCGT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	2333
MlyI	GAGTC	2 cut(s)	600, 1424
MmeI	TCCRAC	2 cut(s)	1867, 2535
Mox20I	TGGCCA	1 cut(s)	2333
Mph1103I	ATGCAT	1 cut(s)	1621
MroI	TCCGGA	2 cut(s)	561, 1033
MroXI	GAANNNNTTC	3 cut(s)	1513, 2040, 2562
MscI	TGGCCA	1 cut(s)	2333
MseI	TTAA	7 cut(s)	840, 1191, 1323, 1911, 1946, 2127, 2715
MslI	CAYNNNNRTG	2 cut(s)	638, 1225
Msp20I	TGGCCA	1 cut(s)	2333
MspA1I	CMGCKG	2 cut(s)	1634, 2015
MspI	CCGG	3 cut(s)	276, 562, 1034
MspR9I	CCNGG	2 cut(s)	446, 588
MunI	CAATTG	1 cut(s)	2301
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	446, 588
MvnI	CGCG	2 cut(s)	212, 857
NdeI	CATATG	1 cut(s)	1723
NlaIV	GGNNCC	7 cut(s)	7, 467, 601, 1083, 1995, 2687, 2784
NmeAIII	GCCGAG	3 cut(s)	180, 1381, 2434
NmuCI	GTSAC	2 cut(s)	971, 1949
NsbI	TGCGCA	1 cut(s)	1427
NsiI	ATGCAT	1 cut(s)	1621
NspI	RCATGY	1 cut(s)	1304
PagI	TCATGA	2 cut(s)	1605, 2473
PaqCI	CACCTGC	2 cut(s)	2426, 2600
PceI	AGGCCT	2 cut(s)	1970, 2167
PciSI	GCTCTTC	2 cut(s)	302, 510
PcsI	WCGNNNNNNNCGW	6 cut(s)	102, 258, 312, 423, 611, 2423
PctI	GAATGC	1 cut(s)	678
PdmI	GAANNNNTTC	3 cut(s)	1513, 2040, 2562
PfeI	GAWTC	3 cut(s)	851, 2507, 2798
PflFI	GACNNNGTC	2 cut(s)	47, 1135
PflMI	CCANNNNNTGG	2 cut(s)	451, 2554
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	8 cut(s)	17, 570, 943, 1716, 2017, 2407, 2434, 2455
PleI	GAGTC	2 cut(s)	599, 1423
PmaCI	CACGTG	1 cut(s)	2273
PmlI	CACGTG	1 cut(s)	2273
PpsI	GAGTC	2 cut(s)	599, 1423
Ppu21I	YACGTR	2 cut(s)	648, 2273
PpuMI	RGGWCCY	2 cut(s)	1081, 2783
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	1081, 2783
Psp6I	CCWGG	2 cut(s)	444, 586
PspCI	CACGTG	1 cut(s)	2273
PspGI	CCWGG	2 cut(s)	444, 586
PspN4I	GGNNCC	7 cut(s)	7, 467, 601, 1083, 1995, 2687, 2784
PspPI	GGNCC	3 cut(s)	1081, 2603, 2783
PspPPI	RGGWCCY	2 cut(s)	1081, 2783
PsrI	GAACNNNNNNTAC	2 cut(s)	2115, 2147
PstI	CTGCAG	3 cut(s)	1387, 2020, 2458
PstNI	CAGNNNCTG	1 cut(s)	2051
PsuI	RGATCY	2 cut(s)	1705, 2539
PsyI	GACNNNGTC	2 cut(s)	47, 1135
PvuII	CAGCTG	2 cut(s)	1634, 2015
RsaI	GTAC	3 cut(s)	170, 2254, 2524
RsaNI	GTAC	3 cut(s)	169, 2253, 2523
RseI	CAYNNNNRTG	2 cut(s)	638, 1225
SacI	GAGCTC	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	1014
SapI	GCTCTTC	2 cut(s)	302, 510
SaqAI	TTAA	7 cut(s)	840, 1191, 1323, 1911, 1946, 2127, 2715
SatI	GCNGC	8 cut(s)	16, 569, 942, 1715, 2016, 2406, 2433, 2454
Sau96I	GGNCC	3 cut(s)	1081, 2603, 2783
ScaI	AGTACT	2 cut(s)	2254, 2524
SchI	GAGTC	2 cut(s)	600, 1424
ScrFI	CCNGG	2 cut(s)	446, 588
SduI	GDGCHC	8 cut(s)	8, 432, 459, 468, 614, 1867, 2443, 2670
SfcI	CTRYAG	4 cut(s)	1383, 2016, 2454, 2535
SinI	GGWCC	3 cut(s)	1081, 2603, 2783
SmiMI	CAYNNNNRTG	2 cut(s)	638, 1225
SmlI	CTYRAG	5 cut(s)	266, 945, 955, 2287, 2754
SmoI	CTYRAG	5 cut(s)	266, 945, 955, 2287, 2754
SnaBI	TACGTA	1 cut(s)	648
SpeI	ACTAGT	1 cut(s)	2519
SseBI	AGGCCT	2 cut(s)	1970, 2167
SspMI	CTAG	5 cut(s)	461, 2067, 2205, 2520, 2884
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	2 cut(s)	1970, 2167
StyD4I	CCNGG	2 cut(s)	444, 586
StyI	CCWWGG	5 cut(s)	10, 30, 75, 460, 2400
TaaI	ACNGT	7 cut(s)	427, 977, 1166, 1579, 1955, 2515, 2593
TaiI	ACGT	3 cut(s)	192, 650, 2275
TatI	WGTACW	3 cut(s)	168, 2252, 2522
TauI	GCSGC	3 cut(s)	18, 571, 2408
TfiI	GAWTC	3 cut(s)	851, 2507, 2798
Tru1I	TTAA	7 cut(s)	840, 1191, 1323, 1911, 1946, 2127, 2715
Tru9I	TTAA	7 cut(s)	840, 1191, 1323, 1911, 1946, 2127, 2715
TscAI	CASTG	8 cut(s)	1537, 1995, 2052, 2452, 2463, 2509, 2668, 2683
TseFI	GTSAC	2 cut(s)	971, 1949
TseI	GCWGC	5 cut(s)	941, 1714, 2015, 2432, 2453
Tsp45I	GTSAC	2 cut(s)	971, 1949
TspGWI	ACGGA	1 cut(s)	2520
TspRI	CASTG	8 cut(s)	1537, 1995, 2052, 2452, 2463, 2509, 2668, 2683
Tth111I	GACNNNGTC	2 cut(s)	47, 1135
Van91I	CCANNNNNTGG	2 cut(s)	451, 2554
VneI	GTGCAC	1 cut(s)	2439
VpaK11BI	GGWCC	3 cut(s)	1081, 2603, 2783
XapI	RAATTY	2 cut(s)	2260, 2307
XceI	RCATGY	1 cut(s)	1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1263
XmaJI	CCTAGG	1 cut(s)	460
XmiI	GTMKAC	3 cut(s)	186, 1015, 2084
XmnI	GAANNNNTTC	3 cut(s)	1513, 2040, 2562
XspI	CTAG	5 cut(s)	461, 2067, 2205, 2520, 2884
ZrmI	AGTACT	2 cut(s)	2254, 2524
Zsp2I	ATGCAT	1 cut(s)	1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.