Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

18806440 .. 18807625

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTCAGATTCCCAACTTAGACAATGCTCCGATCAATCTCACATCCCTCAGGGAACAATCTCAGAGGGAGCTCGTAAACATCCTCAAGAATATTCGAGGAAAGAAGTGTTTGGTCATTGATCAGAAGCTCAGCGGCTCTCTCTCGTCGATCATCCAGACTTCGATCCTCAAAGAACATGGAATTGAGTTGCGGCATCTTTCAGCTGATCCCATTCAAACCGACTGTTCCAAGCTGGTTTACCTTGTCCGTTCAGAGCTTACGTTGATGACATTAATTAGTTCGCATATTCATAATGATACGTCAAAAGGACTGCAGAGAGAATACTATGTTTATTTTGTCCCTCGCCGTGCAGTTGGGTGTGAGAAGATCCTTGAAGAGGAAAAGGTCCATCACTTGTTGACTATAGGAGAGTATCCGTTATACATTGTTCCTTTGGACGAGGATGTTTTGTCATTTGAACTTGATCTTTCTTGCAAGAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

6.06

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	36 - 156	1.1e-18	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 193
AclWI	GGATC	3 cut(s)	160, 203, 364
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	218, 377, 461
AluBI	AGCT	5 cut(s)	73, 130, 206, 235, 259
AluI	AGCT	5 cut(s)	73, 130, 206, 235, 259
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	3 cut(s)	160, 203, 364
AseI	ATTAAT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	1 cut(s)	399
BceAI	ACGGC	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	426
BclI	TGATCA	1 cut(s)	121
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	2 cut(s)	314, 405
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	2 cut(s)	136, 194
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	137, 195
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
BmsI	GCATC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse21I	CCTNAGG	1 cut(s)	50
BseGI	GGATG	4 cut(s)	44, 81, 153, 451
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	4 cut(s)	20, 64, 77, 145
BsgI	GTGCAG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	135, 193
BspCNI	CTCAG	4 cut(s)	19, 63, 76, 144
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	3 cut(s)	160, 203, 364
BssMI	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	6, 19, 50, 63, 131
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	44, 81, 153, 451
BstKTI	GATC	7 cut(s)	36, 124, 153, 168, 211, 372, 469
BstMBI	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
BstSFI	CTRYAG	2 cut(s)	314, 405
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	44, 81, 153, 451
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	5, 73, 130, 138, 206, 235, 259
CviKI_1	RGCY	7 cut(s)	5, 73, 130, 138, 206, 235, 259
DdeI	CTNAG	5 cut(s)	6, 19, 50, 63, 131
DpnI	GATC	7 cut(s)	35, 123, 152, 167, 210, 371, 468
DpnII	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	180, 288, 294, 330, 407, 424
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	136, 194
FokI	GGATG	4 cut(s)	31, 68, 140, 458
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	136, 194
FspBI	CTAG	1 cut(s)	487
GluI	GCNGC	2 cut(s)	136, 194
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	10
Hpy166II	GTNNAC	3 cut(s)	79, 241, 402
Hpy188I	TCNGA	5 cut(s)	9, 33, 66, 126, 256
Hpy188III	TCNNGA	2 cut(s)	88, 157
Hpy8I	GTNNAC	3 cut(s)	79, 241, 402
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	263, 302
HpyCH4V	TGCA	3 cut(s)	316, 353, 477
HpyF3I	CTNAG	5 cut(s)	6, 19, 50, 63, 131
HpySE526I	ACGT	2 cut(s)	263, 302
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
LmnI	GCTCC	2 cut(s)	34, 70
LpnPI	CCDG	3 cut(s)	37, 170, 221
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	487
MaeII	ACGT	2 cut(s)	263, 302
MalI	GATC	7 cut(s)	35, 123, 152, 167, 210, 371, 468
MboI	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
MboII	GAAGA	2 cut(s)	379, 389
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	183, 276
MnlI	CCTC	8 cut(s)	59, 60, 92, 95, 179, 354, 373, 436
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	135, 206
Mva1269I	GAATGC	1 cut(s)	487
NdeII	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
NlaIII	CATG	1 cut(s)	182
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	137, 195
PshBI	ATTAAT	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	136, 194
Sau3AI	GATC	7 cut(s)	33, 121, 150, 165, 208, 369, 466
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	75, 132, 208, 237, 246, 261, 266, 305, 390
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	314, 405
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	183, 276
SsiI	CCGC	2 cut(s)	135, 193
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	487
SstI	GAGCTC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	2 cut(s)	266, 305
TaqI	TCGA	3 cut(s)	97, 149, 164
TasI	AATT	2 cut(s)	183, 276
TauI	GCSGC	2 cut(s)	138, 196
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	2 cut(s)	239, 408
VpaK11BI	GGWCC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.