Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

18809720 .. 18812175

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACTAGGCACATAAATCTTGCTCAGCATCTGTCAACGTTTACGTCAAAGGCATCATTTCTCGGACAACTTGACATGGAACACACAATTATTGAGGATCAAAGTTATGACATATGCTTTGAGCATATTGAAGAAATGATCCATAAGCAGGAGCCTCTTGTGAACGTCCTACGTGTTCTCATAGTGTTTTCTATTACAAATTCTGGGTTACCCAAAAAACATTTCGACTATTTAAGGAGAGAACTACTCCATAGTTATGGATTCGAGCACATGGTTACACTGAATAATTTAGAGAAAGCTGGATTGCTTAAAAAACAGGAGACGAAAAGCAACTGGCTGACAGTTAAACGTGCCCTGCAGCTTGTAGTTGAGGACACTGACACTGCAAATCCCAATGATATTTCTTATGTGTTTTCTGGATACGCACCTCTTAGCATTCGCCTCATCCAGCATGCTGTTCGATCTGGATGGCTTCCTATTGAAGAGATTCTGAGGCTTTTACCTAGACCACATTCAGAAATAAAGAGAGGCAGATTCTCAGGCAGCCCGTCGTTAGACACTTTGCAGGGGCATTCGGCCAATGTAGACAAGGTGTCTGATGGAAGGCGTTCTCTAGTACTTGTTGTCTTCGTTGGAGGTGCAACGTTTGCGGAGATCTCTGCTCTTCGATTTCTCAGTGCTCAGGTATTTGGAAGGGTGGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

236

Amino Acids

26.59

Weight (kDa)

7.95

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	2 - 228	1.8e-41	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	1 cut(s)	650
AclI	AACGTT	2 cut(s)	38, 644
AclWI	GGATC	2 cut(s)	105, 133
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	131, 482
AhdI	GACNNNNNGTC	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	299, 361
AluI	AGCT	2 cut(s)	299, 361
Alw21I	GWGCWC	2 cut(s)	270, 682
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	105, 133
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	2 cut(s)	358, 543
ApoI	RAATTY	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
Asp700I	GAANNNNTTC	2 cut(s)	486, 607
BaeGI	GKGCMC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	619
Bbv12I	GWGCWC	2 cut(s)	270, 682
BbvI	GCAGC	2 cut(s)	370, 555
BccI	CCATC	2 cut(s)	462, 593
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	3 cut(s)	6, 504, 614
BfmI	CTRYAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	2 cut(s)	359, 544
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	360, 545
BmcAI	AGTACT	1 cut(s)	618
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	37, 62
BpiI	GAAGAC	1 cut(s)	619
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	444, 473
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	5 cut(s)	38, 482, 552, 688, 695
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	370, 555
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	270, 682
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmI	GAATGC	2 cut(s)	435, 571
BsnI	GGCC	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	270, 355, 682
Bsp143I	GATC	4 cut(s)	97, 138, 461, 654
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	5 cut(s)	37, 483, 551, 687, 694
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	2 cut(s)	105, 133
BspQI	GCTCTTC	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	4 cut(s)	97, 138, 461, 654
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	2 cut(s)	477, 669
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	6 cut(s)	24, 431, 491, 538, 674, 681
BstEII	GGTNACC	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	444, 473
BstKTI	GATC	4 cut(s)	100, 141, 464, 657
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	4 cut(s)	97, 138, 461, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	370, 555
BstV2I	GAAGAC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	444, 473
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	4 cut(s)	278, 375, 381, 682
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	3 cut(s)	76, 271, 452
CviJI	RGCY	8 cut(s)	154, 299, 337, 361, 472, 496, 546, 578
CviKI_1	RGCY	8 cut(s)	154, 299, 337, 361, 472, 496, 546, 578
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	6 cut(s)	24, 431, 491, 538, 674, 681
DpnI	GATC	4 cut(s)	99, 140, 463, 656
DpnII	GATC	4 cut(s)	97, 138, 461, 654
DriI	GACNNNNNGTC	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	477, 669
Eam1105I	GACNNNNNGTC	1 cut(s)	592
EarI	CTCTTC	2 cut(s)	477, 669
Eco91I	GGTNACC	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	3 cut(s)	79, 274, 455
FatI	CATG	3 cut(s)	75, 270, 451
FauNDI	CATATG	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	359, 544
FokI	GGATG	2 cut(s)	431, 480
Fsp4HI	GCNGC	2 cut(s)	359, 544
FspBI	CTAG	3 cut(s)	6, 504, 614
GluI	GCNGC	2 cut(s)	359, 544
HaeIII	GGCC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	79, 274, 455
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	261, 487, 534
Hpy166II	GTNNAC	4 cut(s)	36, 42, 163, 586
Hpy188I	TCNGA	4 cut(s)	65, 492, 517, 598
Hpy188III	TCNNGA	2 cut(s)	417, 465
Hpy8I	GTNNAC	4 cut(s)	36, 42, 163, 586
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	597, 687
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	6 cut(s)	38, 44, 165, 172, 349, 644
HpyCH4V	TGCA	4 cut(s)	358, 386, 565, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	6 cut(s)	24, 431, 491, 538, 674, 681
HpySE526I	ACGT	6 cut(s)	38, 44, 165, 172, 349, 644
Hsp92II	CATG	3 cut(s)	79, 274, 455
Kzo9I	GATC	4 cut(s)	97, 138, 461, 654
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	370, 555
LweI	GCATC	2 cut(s)	37, 62
MaeI	CTAG	3 cut(s)	6, 504, 614
MaeII	ACGT	6 cut(s)	38, 44, 165, 172, 349, 644
MaeIII	GTNAC	2 cut(s)	207, 274
MalI	GATC	4 cut(s)	99, 140, 463, 656
MboI	GATC	4 cut(s)	97, 138, 461, 654
MboII	GAAGA	4 cut(s)	143, 494, 619, 656
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	270, 355, 682
MluCI	AATT	3 cut(s)	87, 199, 286
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	8 cut(s)	88, 165, 364, 438, 452, 486, 521, 629
MroXI	GAANNNNTTC	2 cut(s)	486, 607
MseI	TTAA	3 cut(s)	233, 309, 345
MslI	CAYNNNNRTG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	435, 571
MwoI	GCNNNNNNNGC	1 cut(s)	647
NdeI	CATATG	1 cut(s)	113
NdeII	GATC	4 cut(s)	97, 138, 461, 654
NlaIII	CATG	3 cut(s)	79, 274, 455
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	2 cut(s)	435, 571
PdmI	GAANNNNTTC	2 cut(s)	486, 607
PfeI	GAWTC	3 cut(s)	261, 487, 534
PkrI	GCNGC	2 cut(s)	360, 545
Ppu21I	YACGTR	1 cut(s)	173
Psp1406I	AACGTT	2 cut(s)	38, 644
PspEI	GGTNACC	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	233, 309, 345
SatI	GCNGC	2 cut(s)	359, 544
Sau3AI	GATC	4 cut(s)	97, 138, 461, 654
ScaI	AGTACT	1 cut(s)	618
SduI	GDGCHC	3 cut(s)	270, 355, 682
SfaNI	GCATC	2 cut(s)	37, 62
SfcI	CTRYAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	3 cut(s)	87, 199, 286
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	3 cut(s)	6, 504, 614
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	6 cut(s)	41, 47, 168, 175, 352, 647
TaqI	TCGA	4 cut(s)	225, 264, 460, 667
TasI	AATT	3 cut(s)	87, 199, 286
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	261, 487, 534
Tru1I	TTAA	3 cut(s)	233, 309, 345
Tru9I	TTAA	3 cut(s)	233, 309, 345
TscAI	CASTG	4 cut(s)	285, 382, 388, 682
TseI	GCWGC	2 cut(s)	358, 543
TspRI	CASTG	4 cut(s)	285, 382, 388, 682
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	2 cut(s)	486, 607
XspI	CTAG	3 cut(s)	6, 504, 614
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.