Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Forward (+)

1265222 .. 1266205

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGGCCAATTTAGACTCTTACTATCGCACATTCTTGATCAAATTGTCTCCTAATTTTGTTTCGTATGTATTGAAATCTGTTGAGCTTCGTGGGAAAACTGCATTGCGGTTCTTTGGTTGGGCTGGTAGGCAGAGGAAATATCATCAGAAGCTTGAATGCTATGAGTCTTTGATTGAACTTTTATATCTTAAAGAAATGAACTTTTTGATGACTTCTCGGGCAGCGAAATCTTTGATTAAAAGCTTTGGATGTCTTGGGATGGTTGATGAGCTGTTGTGGGTTTGGCGTAGAATGAAGAAGATTGGGATTGAGCCTAGTTTGTATGCTTATAACTTTCTATTGAATGGTTTGGTGAATTCGATGTTTATTGAATCAGCTGAGCGGGTTTTTGAGGTTATGGAAGGCGGGAAAATTGCACCGGACATTATGATTTATAATACAATGATCGATCGGTATTGTAAGGGAGGGAAAACCCAGAAAGCAATGGAGAAGTTTAGAGCTCTGGAGGGGAGGAATGTGGAACCTGATAAGATTACTTATATGACTTCAATACAGGGGTGTTATTCAGAAGGAGATGTTGATTCGTGTTTGGGTCTTTACCAAGAAATGGAAGAGAAAGGACTTGAAATTCCGTCTCATGCATATAGTTTAGTGATCAACGGCTTTGCAGAGGAGGGAAATGGATGTAAAACCAATGTGGCAAACTATACAGCATTGATTGATTCGTATGCGAAATGTGGGAGCATTGAAGAGGCAATGAAACTTTTTGAGAGGATAAAAAATGAGGGACTTGAACCAGATGAGGTCACTTACGGGGTTATTGTCAATGGATTGTGTAAGAGTGGGAGGGTGGAGGAAGCAATGGAGTACTTTGAGTTTGTGAAGGCAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

300

Amino Acids

34.14

Weight (kDa)

5.43

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	97 - 153	6.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	139 - 167	6.8e-07	PPR repeat
PPR_2	PF13041	141 - 188	1.3e-11	PPR repeat family
PPR_2	PF13041	179 - 224	9.3e-08	PPR repeat family
PPR_1	PF12854	228 - 259	3.9e-07	PPR repeat
PPR_3	PF13812	228 - 277	4.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	233 - 281	2e-15	PPR repeat family
PPR	PF01535	237 - 265	1.2e-07	PPR repeat
PPR_1	PF12854	264 - 293	6.7e-11	PPR repeat
PPR	PF01535	270 - 298	4.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	333, 438
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	385
AciI	CCGC	3 cut(s)	109, 385, 408
AcsI	RAATTY	2 cut(s)	358, 630
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	1 cut(s)	610
AgsI	TTSAA	9 cut(s)	76, 158, 179, 346, 374, 552, 629, 752, 797
AluBI	AGCT	6 cut(s)	88, 154, 246, 274, 380, 503
AluI	AGCT	6 cut(s)	88, 154, 246, 274, 380, 503
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	2 cut(s)	54, 642
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	358, 630
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	679
BclI	TGATCA	2 cut(s)	39, 657
BcoDI	GTCTC	2 cut(s)	54, 642
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	872
BmeT110I	CYCGRG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse3DI	GCAATG	4 cut(s)	104, 492, 765, 870
BseCI	ATCGAT	1 cut(s)	450
BseGI	GGATG	3 cut(s)	257, 267, 692
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMI	GCAATG	4 cut(s)	104, 492, 765, 870
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	2 cut(s)	54, 642
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	1 cut(s)	804
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	39, 447, 451, 657
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	109, 385, 408
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	4 cut(s)	104, 492, 765, 870
BssMI	GATC	4 cut(s)	39, 447, 451, 657
Bst6I	CTCTTC	2 cut(s)	609, 747
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	257, 267, 692
BstKTI	GATC	4 cut(s)	42, 450, 454, 660
BstMAI	GTCTC	2 cut(s)	54, 642
BstMBI	GATC	4 cut(s)	39, 447, 451, 657
BstMCI	CGRYCG	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	257, 267, 692
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	1 cut(s)	641
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	41, 449, 453, 659
DpnII	GATC	4 cut(s)	39, 447, 451, 657
Eam1104I	CTCTTC	2 cut(s)	609, 747
EarI	CTCTTC	2 cut(s)	609, 747
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	505
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	1 cut(s)	644
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	1 cut(s)	640
FauI	CCCGC	2 cut(s)	378, 401
FbaI	TGATCA	2 cut(s)	39, 657
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	264, 274, 699
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	1 cut(s)	644
HindIII	AAGCTT	2 cut(s)	152, 244
HinfI	GANTC	5 cut(s)	17, 167, 374, 584, 725
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	150, 571
Hpy188III	TCNNGA	2 cut(s)	37, 506
HpyAV	CCTTC	3 cut(s)	398, 566, 880
HpyCH4V	TGCA	4 cut(s)	104, 419, 644, 671
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	644
Ksp22I	TGATCA	2 cut(s)	39, 657
Kzo9I	GATC	4 cut(s)	39, 447, 451, 657
LmnI	GCTCC	1 cut(s)	744
LpnPI	CCDG	7 cut(s)	111, 435, 491, 491, 540, 542, 813
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	4 cut(s)	41, 449, 453, 659
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	4 cut(s)	39, 447, 451, 657
MboII	GAAGA	4 cut(s)	310, 313, 626, 764
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	6 cut(s)	10, 44, 55, 358, 414, 630
MlyI	GAGTC	2 cut(s)	11, 176
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	2 cut(s)	192, 240
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	164
NdeII	GATC	4 cut(s)	39, 447, 451, 657
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	646
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	374, 584, 725
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	226
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	2 cut(s)	11, 175
PpsI	GAGTC	2 cut(s)	11, 175
PsiI	TTATAA	2 cut(s)	333, 438
Psp124BI	GAGCTC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	525
PvuI	CGATCG	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	192, 240
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	39, 447, 451, 657
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	2 cut(s)	11, 176
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	9 cut(s)	90, 156, 248, 276, 382, 399, 505, 529, 810
Sse9I	AATT	6 cut(s)	10, 44, 55, 358, 414, 630
SsiI	CCGC	3 cut(s)	109, 385, 408
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	505
TaqI	TCGA	2 cut(s)	362, 450
TasI	AATT	6 cut(s)	10, 44, 55, 358, 414, 630
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	3 cut(s)	374, 584, 725
Tru1I	TTAA	2 cut(s)	192, 240
Tru9I	TTAA	2 cut(s)	192, 240
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	3 cut(s)	215, 311, 776
TspGWI	ACGGA	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	358, 630
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	872
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.