pycom09g03370
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2505507 .. 2506902
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03370.3

Sequence Viewer

Length: 1194 bp
ATGGAAATGGATCGATCTTTCTTGCTATCAAACATATATCTAGTGGTGCCGAGGCAGTTCATGGATCTTGGGTTGGCTGCTAAAAATGGTGATGCTGATGAGCATTCACAGTCTTCGTCTGATGAACGAAGTTGTGGCGAACGGTCTGGCTCGCTTGGAGATAATGTGAAGGCTGCAGGGCACAGTGATGACCAAGGGATCGGTTTTGATCACAAAAAGAAGGATTTCGGGAGACGAATTGGGAGAGAAGAGAGCCCAGATCAGCCGTCACAGAGTTGGGGGCCTAACAAAGTTCCGAGGCTCAGTTCTCCGAAAGAGGTTGATCAAACTGAGGCTACAATGAGGAAGGCTCGGGTCTCGGTTAGAGCTCGATCCGAGGCGCCTATGGTATGTGCTTTTGTACTGAATTGGAATAGTATCACTGATGGATGTCAATGGCGAAAGTATGGGCAAAAGATGGCAAAAGGAAACCCTTGTCCTCGTGCTTATTATCGATGCACCATGGCTGCTGGTTGCCCCGTTCGAAAACAAGTACAAAGATGTGCAGAAGATAGGACAATCCTAATCACTACATATGAAGGCAATCACAACCACCCATTGCCTCCGGCAGCAATGGCAATGGCATCGACTACATCATCCGCAGCACGGATGTTGCTCTCAGGGGCTATGCCGAGTGCCGACAGCGTAATGGACTCAAACTTCCTCAGCAGGACAATCCTCCCATACTCCACTAGCATGGCCACCATCTCCGCCTCAGCGCCATTCCCTACTGTTACATTGGACTTAACACAGTCACCGAACCCTTTACAACAATTCCAAAGGCCACCAGGCCAATTCAACATTCCATTCCCAAACCCTAATCAGAATTTCACCAGTGGCCCTTCCTCATTGCTGCCTCAAATTTTTAGTCAGGCGCTATACAACCAGTCCAAATTCTCTGGCCTCCAAATGTCACAGGATACAGACCGTGCGGCCGTCCAATTAGGTCACCAATCGCAACCCGGGCAGCAGCAGGGCTCACTGGCCGATCTTACTGCCGTCACCGCTGCCATTGCAGCTGATCCAAACTTCACTGCAGCCCTAGCAGCTGCCATCACCTCTATCATTGGCAATGCTCATCCAAACAACAATGTTGCCAACCCAGCAACCAACTCAAACAACAACAATGCCAATGCCACCAAGCAACAGCAGTAG

Protein Analysis

398

Amino Acids

42.87

Weight (kDa)

8.64

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 379
AciI CCGC 4 cut(s) 639, 750, 971, 1044
AclWI GGATC 5 cut(s) 18, 72, 206, 366, 1055
AcoI YGGCCR 3 cut(s) 738, 972, 1023
AcsI RAATTY 3 cut(s) 865, 900, 932
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 2 cut(s) 402, 534
AfiI CCNNNNNNNGG 1 cut(s) 645
AgsI TTSAA 1 cut(s) 838
AjnI CCWGG 1 cut(s) 826
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 3 cut(s) 368, 1058, 1088
AluI AGCT 3 cut(s) 368, 1058, 1088
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 226, 361
AlwI GGATC 5 cut(s) 18, 72, 206, 366, 1055
Ama87I CYCGRG 2 cut(s) 351, 1001
AoxI GGCC 8 cut(s) 281, 738, 821, 829, 877, 940, 972, 1023
ApoI RAATTY 3 cut(s) 865, 900, 932
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 3 cut(s) 382, 760, 916
AspS9I GGNCC 2 cut(s) 281, 878
AsuC2I CCSGG 2 cut(s) 1002, 1003
AsuHPI GGTGA 6 cut(s) 101, 786, 862, 980, 1033, 1087
AsuII TTCGAA 1 cut(s) 523
AvaI CYCGRG 2 cut(s) 351, 1001
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 740
BanI GGYRCC 2 cut(s) 46, 379
BanII GRGCYC 3 cut(s) 257, 370, 1019
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 370
BbvCI CCTCAGC 2 cut(s) 704, 754
BccI CCATC 4 cut(s) 419, 451, 752, 1100
BceAI ACGGC 3 cut(s) 250, 959, 1022
BcgI CGANNNNNNTGC 4 cut(s) 606, 640, 1016, 1050
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 952
BclI TGATCA 2 cut(s) 208, 322
BcnI CCSGG 2 cut(s) 1002, 1003
BcoDI GTCTC 2 cut(s) 226, 361
BfaI CTAG 3 cut(s) 41, 732, 1082
BfmI CTRYAG 2 cut(s) 174, 1074
BfoI RGCGCY 3 cut(s) 383, 761, 917
BfuI GTATCC 1 cut(s) 952
Bme1390I CCNGG 3 cut(s) 828, 1002, 1003
BmeT110I CYCGRG 2 cut(s) 351, 1001
BmgT120I GGNCC 2 cut(s) 281, 878
BmiI GGNNCC 3 cut(s) 48, 282, 381
BmrFI CCNGG 3 cut(s) 828, 1002, 1003
BmsI GCATC 3 cut(s) 82, 485, 632
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 334, 366
Bpu10I CCTNAGC 2 cut(s) 704, 754
Bpu14I TTCGAA 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 1002, 1003
Bsa29I ATCGAT 2 cut(s) 13, 493
BsaHI GRCGYC 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 6 cut(s) 50, 193, 296, 375, 501, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 645
Bse1I ACTGG 3 cut(s) 873, 925, 1026
Bse3DI GCAATG 6 cut(s) 596, 618, 624, 887, 1050, 1117
BseBI CCWGG 1 cut(s) 828
BseCI ATCGAT 2 cut(s) 13, 493
BseDI CCNNGG 6 cut(s) 50, 193, 296, 375, 501, 1001
BseGI GGATG 4 cut(s) 434, 635, 654, 1117
BseLI CCNNNNNNNGG 1 cut(s) 645
BseMI GCAATG 6 cut(s) 596, 618, 624, 887, 1050, 1117
BseMII CTCAG 5 cut(s) 316, 321, 672, 718, 768
BseNI ACTGG 3 cut(s) 873, 925, 1026
BseSI GKGCMC 1 cut(s) 183
BseX3I CGGCCG 1 cut(s) 972
BseYI CCCAGC 1 cut(s) 1141
BsgI GTGCAG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 8 cut(s) 283, 740, 823, 831, 879, 942, 974, 1025
BshNI GGYRCC 2 cut(s) 46, 379
BshVI ATCGAT 2 cut(s) 13, 493
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 2 cut(s) 351, 1001
BsiSI CCGG 2 cut(s) 605, 1002
BslI CCNNNNNNNGG 1 cut(s) 645
BsmAI GTCTC 2 cut(s) 226, 361
BsmBI CGTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 8 cut(s) 283, 740, 823, 831, 879, 942, 974, 1025
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 2 cut(s) 351, 1001
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 4 cut(s) 183, 257, 370, 1019
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 4 cut(s) 639, 750, 971, 1044
BspANI GGCC 8 cut(s) 283, 740, 823, 831, 879, 942, 974, 1025
BspCNI CTCAG 5 cut(s) 315, 322, 671, 717, 767
BspDI ATCGAT 2 cut(s) 13, 493
BspLI GGNNCC 3 cut(s) 48, 282, 381
BspMAI CTGCAG 2 cut(s) 178, 1078
BspPI GGATC 5 cut(s) 18, 72, 206, 366, 1055
BspT104I TTCGAA 1 cut(s) 523
BspT107I GGYRCC 2 cut(s) 46, 379
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 6 cut(s) 596, 618, 624, 887, 1050, 1117
BsrI ACTGG 3 cut(s) 873, 925, 1026
BssECI CCNNGG 6 cut(s) 50, 193, 296, 375, 501, 1001
BssNI GRCGYC 1 cut(s) 380
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 193, 501
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 6 cut(s) 111, 144, 185, 772, 792, 968
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 5 cut(s) 302, 330, 658, 704, 754
BstDSI CCRYGG 1 cut(s) 501
BstEII GGTNACC 1 cut(s) 986
BstF5I GGATG 4 cut(s) 434, 635, 654, 1117
BstH2I RGCGCY 3 cut(s) 383, 761, 917
BstHHI GCGC 3 cut(s) 382, 760, 916
BstMAI GTCTC 2 cut(s) 226, 361
BstMCI CGRYCG 1 cut(s) 975
BstMWI GCNNNNNNNGC 8 cut(s) 614, 1003, 1043, 1052, 1055, 1082, 1085, 1142
BstNI CCWGG 1 cut(s) 828
BstPI GGTNACC 1 cut(s) 986
BstSCI CCNGG 3 cut(s) 826, 1000, 1001
BstSFI CTRYAG 2 cut(s) 174, 1074
BstSLI GKGCMC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 64
BstZI CGGCCG 1 cut(s) 972
Bsu15I ATCGAT 2 cut(s) 13, 493
BsuI GTATCC 1 cut(s) 952
BsuRI GGCC 8 cut(s) 283, 740, 823, 831, 879, 942, 974, 1025
BsuTUI ATCGAT 2 cut(s) 13, 493
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 4 cut(s) 434, 635, 654, 1117
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 5 cut(s) 190, 420, 880, 1019, 1071
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 3 cut(s) 382, 760, 916
Cfr13I GGNCC 2 cut(s) 281, 878
Cfr9I CCCGGG 1 cut(s) 1001
ClaI ATCGAT 2 cut(s) 13, 493
Csp6I GTAC 2 cut(s) 401, 533
CviAII CATG 3 cut(s) 61, 502, 736
CviQI GTAC 2 cut(s) 401, 533
DdeI CTNAG 5 cut(s) 302, 330, 658, 704, 754
DinI GGCGCC 1 cut(s) 381
EaeI YGGCCR 3 cut(s) 738, 972, 1023
EagI CGGCCG 1 cut(s) 972
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 739
Ecl136II GAGCTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 972
Eco130I CCWWGG 2 cut(s) 193, 501
Eco24I GRGCYC 3 cut(s) 257, 370, 1019
Eco31I GGTCTC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 972
Eco53kI GAGCTC 1 cut(s) 368
Eco88I CYCGRG 2 cut(s) 351, 1001
Eco91I GGTNACC 1 cut(s) 986
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 826
EcoT14I CCWWGG 2 cut(s) 193, 501
EcoT38I GRGCYC 3 cut(s) 257, 370, 1019
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 193, 501
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 3 cut(s) 64, 505, 739
FatI CATG 3 cut(s) 60, 501, 735
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 208, 322
FokI GGATG 4 cut(s) 441, 622, 661, 1104
FriOI GRGCYC 3 cut(s) 257, 370, 1019
FspBI CTAG 3 cut(s) 41, 732, 1082
GlaI GCGC 3 cut(s) 381, 759, 915
GsaI CCCAGC 1 cut(s) 1145
HaeII RGCGCY 3 cut(s) 383, 761, 917
HaeIII GGCC 8 cut(s) 283, 740, 823, 831, 879, 942, 974, 1025
HapII CCGG 2 cut(s) 605, 1002
HhaI GCGC 3 cut(s) 382, 760, 916
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 3 cut(s) 64, 505, 739
Hin6I GCGC 3 cut(s) 380, 758, 914
HinP1I GCGC 3 cut(s) 380, 758, 914
HinfI GANTC 1 cut(s) 692
HpaII CCGG 2 cut(s) 605, 1002
HphI GGTGA 6 cut(s) 101, 786, 862, 980, 1033, 1087
Hpy188I TCNGA 5 cut(s) 121, 297, 312, 376, 864
Hpy188III TCNNGA 1 cut(s) 229
HpyAV CCTTC 5 cut(s) 163, 214, 340, 572, 891
HpyCH4III ACNGT 6 cut(s) 111, 144, 185, 772, 792, 968
HpyCH4V TGCA 5 cut(s) 176, 498, 545, 1055, 1076
HpyF10VI GCNNNNNNNGC 8 cut(s) 614, 1003, 1043, 1052, 1055, 1082, 1085, 1142
HpyF3I CTNAG 5 cut(s) 302, 330, 658, 704, 754
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 3 cut(s) 64, 505, 739
HspAI GCGC 3 cut(s) 380, 758, 914
KasI GGCGCC 1 cut(s) 379
Ksp22I TGATCA 2 cut(s) 208, 322
LweI GCATC 3 cut(s) 82, 485, 632
MaeI CTAG 3 cut(s) 41, 732, 1082
MaeIII GTNAC 6 cut(s) 267, 772, 792, 951, 986, 1039
MboII GAAGA 3 cut(s) 105, 260, 560
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 4 cut(s) 183, 257, 370, 1019
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 8 cut(s) 237, 406, 812, 833, 865, 900, 932, 980
MluNI TGGCCA 1 cut(s) 740
Mly113I GGCGCC 1 cut(s) 380
MlyI GAGTC 1 cut(s) 686
Mox20I TGGCCA 1 cut(s) 740
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 785
MslI CAYNNNNRTG 2 cut(s) 186, 734
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 3 cut(s) 1046, 1058, 1088
MspI CCGG 2 cut(s) 605, 1002
MspR9I CCNGG 3 cut(s) 828, 1002, 1003
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 8 cut(s) 614, 1003, 1043, 1052, 1055, 1082, 1085, 1142
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 2 cut(s) 1002, 1003
NcoI CCATGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 574
NlaIII CATG 3 cut(s) 64, 505, 739
NlaIV GGNNCC 3 cut(s) 48, 282, 381
NmeAIII GCCGAG 2 cut(s) 75, 696
NmuCI GTSAC 5 cut(s) 267, 792, 951, 986, 1039
NspV TTCGAA 1 cut(s) 523
PctI GAATGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 224
PleI GAGTC 1 cut(s) 686
PluTI GGCGCC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 986
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 3 cut(s) 48, 282, 381
PspPI GGNCC 2 cut(s) 281, 878
PstI CTGCAG 2 cut(s) 178, 1078
PsuI RGATCY 1 cut(s) 64
PvuII CAGCTG 2 cut(s) 1058, 1088
RsaI GTAC 2 cut(s) 402, 534
RsaNI GTAC 2 cut(s) 401, 533
RseI CAYNNNNRTG 2 cut(s) 186, 734
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 785
Sau96I GGNCC 2 cut(s) 281, 878
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 828, 1002, 1003
SduI GDGCHC 4 cut(s) 183, 257, 370, 1019
SetI ASST 6 cut(s) 321, 370, 988, 1060, 1090, 1100
SfaNI GCATC 3 cut(s) 82, 485, 632
SfcI CTRYAG 2 cut(s) 174, 1074
SfoI GGCGCC 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 523
SmaI CCCGGG 1 cut(s) 1003
SmiMI CAYNNNNRTG 2 cut(s) 186, 734
Sse9I AATT 8 cut(s) 237, 406, 812, 833, 865, 900, 932, 980
SsiI CCGC 4 cut(s) 639, 750, 971, 1044
SspDI GGCGCC 1 cut(s) 379
SspMI CTAG 3 cut(s) 41, 732, 1082
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 3 cut(s) 826, 1000, 1001
StyI CCWWGG 2 cut(s) 193, 501
TaaI ACNGT 6 cut(s) 111, 144, 185, 772, 792, 968
TaqI TCGA 5 cut(s) 13, 370, 493, 523, 626
TasI AATT 8 cut(s) 237, 406, 812, 833, 865, 900, 932, 980
TatI WGTACW 2 cut(s) 400, 532
TauI GCSGC 1 cut(s) 974
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 5 cut(s) 190, 427, 880, 1026, 1078
TseFI GTSAC 5 cut(s) 267, 792, 951, 986, 1039
Tsp45I GTSAC 5 cut(s) 267, 792, 951, 986, 1039
TspDTI ATGAA 3 cut(s) 49, 138, 591
TspGWI ACGGA 1 cut(s) 661
TspMI CCCGGG 1 cut(s) 1001
TspRI CASTG 5 cut(s) 190, 427, 880, 1026, 1078
XapI RAATTY 3 cut(s) 865, 900, 932
XmaI CCCGGG 1 cut(s) 1001
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 3 cut(s) 41, 732, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.