Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003005.1

Orthogroup ID

OG0002724

Physical Location & Seq

Genomic Coordinates Reverse (-)

119220 .. 121586

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003005.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

atggatgaacaactctgtgacttgaaacacttacactcggaccagagctttctggggctcagtagtagttccgatcatcgtctagttgaacccccaataaaagaagaaacattattcaaagagatcaaagaagttgatttcctttccaataatagacttcccaatcaaccgccgcctggtcatgcagagctgaccactcttcagcttcaagttgagttacagcgagaacacgaagagaatcaaaagctcagaaccatattggaccaaatcaccaaaaactacaatgggttgcaggctcagctgcgcatgatcagactacaagagcagctgcaaacttgtgcagaagacagcaatcttgatccgaagttatccttcctacatgatgaccaatcccccaaaagtagttctcatcatgatcatgatcaagaacaagttccagctgttactgatcatgatcaggttcctttaagaagggctagggtctccgtacgagcaagatcggaagctcccatgattagcgatggatgtcaatggaggaaatacggtcaaaagatggccaagggtaatccttgtccccgtgcttactatcgctgcactatggtcgctggatgccccgttcggaaacaggtgcaaagattggcagaggacaagactattctgataacaacatatgaaggtaatcacaaccaccctcttccagcagctgcgatatctatggctaataccacatcagcagcagcagccatgttgatatcgggttcaacaaccagcaaggaagctcatcatcatctaacacaccctacaggcttgttctcttctcttcagccgctctatggttcatccatggccaccttttcaacctctgcaccatttccctcaatcacactggacatgacccgcacccctaaccctaaccctaaccctaatcccatgcagttcatggacagtagtgccacatttcctaatcctttgcagggttatagtcatccgcttatagggcaccccatgtgtttgaatttccctcagcataatcatgcagcgctaacaccagcggcaatgcaactagcagatcgaccccacggttcgatggttgagacaataacttcagccattacttctgacccgaagttcactacagccctagctgctgccctctcaagtagaatgaataatgttgagaatattaatgctggattacaaggaagtaccaatgatattggttcccttaacagtaatgggagtgaggtttgcgctgcattttctggctccccacagcttcctcagtcctgcaccactttctccaccacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

436

Amino Acids

47.88

Weight (kDa)

6.22

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01720
fragaria_vesca	FvH4_1g26200 FvH4_1g26200 FvH4_6g42870 FvH4_6g42870 FvH4_6g42870
malus_domestica	MD09G1111200.v1.1 MD17G1099000.v1.1
prunus_persica	Prupe.3G002300_v2.0.a1 Prupe.3G214800_v2.0.a1
pyrus_communis	pycom09g03370
rosa_chinensis	RchiOBHm_Chr2g0158801 RchiOBHm_Chr3g0485691 RchiOBHm_Chr3g0485711
rosa_laevigata	RLG00000021114 RLG00000023129 RLG00000023130
rosa_multiflora	Rmu_sc0003005.1_g000017 Rmu_sc0003005.1_g000026 Rmu_ssc0000129.1_g000002
rosa_roxburghii	Rroxscaffold_6G00396400 Rroxscaffold_6G00396500 Rroxscaffold_6G00396810 Rroxscaffold_6G00396830
rosa_rugosa	Rorug02G0472600 Rorug03G0220800
rosa_samantha	Rh2AG538400 Rh2BG551100 Rh2CG521600 Rh2DG560900 Rh3AG270000 Rh3AG270200 Rh3BG305800 Rh3CG303900 Rh3CG304200 Rh3DG300200
rosa_wichuraiana	Rw0G006930 Rw0G009910 Rw2G044560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	999
AccBSI	CCGCTC	1 cut(s)	829
AciI	CCGC	6 cut(s)	170, 173, 827, 898, 989, 1052
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	555, 846
AcsI	RAATTY	1 cut(s)	1015
AcuI	CTGAAG	3 cut(s)	185, 806, 1089
AfaI	GTAC	2 cut(s)	489, 1207
AfeI	AGCGCT	1 cut(s)	1041
AfiI	CCNNNNNNNGG	4 cut(s)	176, 833, 974, 995
AgsI	TTSAA	7 cut(s)	25, 89, 118, 209, 762, 858, 1015
AjnI	CCWGG	1 cut(s)	175
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
Alw26I	GTCTC	2 cut(s)	487, 1088
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	1041
AoxI	GGCC	2 cut(s)	555, 846
ApoI	RAATTY	1 cut(s)	1015
AseI	ATTAAT	1 cut(s)	1185
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	3 cut(s)	306, 1042, 1253
AspS9I	GGNCC	2 cut(s)	40, 262
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	40, 262
BaeGI	GKGCMC	1 cut(s)	1002
BalI	TGGCCA	2 cut(s)	557, 848
BanI	GGYRCC	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	1023
BccI	CCATC	3 cut(s)	515, 547, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	5 cut(s)	309, 415, 421, 448, 454
BcoDI	GTCTC	2 cut(s)	487, 1088
BfaI	CTAG	4 cut(s)	83, 477, 1064, 1142
BfmI	CTRYAG	2 cut(s)	801, 1134
BfoI	RGCGCY	1 cut(s)	1043
BlpI	GCTNAGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	2 cut(s)	40, 262
BmgT120I	GGNCC	2 cut(s)	40, 262
BmiI	GGNNCC	4 cut(s)	462, 1001, 1222, 1267
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	1141
BsaBI	GATNNNNATC	2 cut(s)	420, 453
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	558, 843, 1078
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 833, 974, 995
Bse1I	ACTGG	1 cut(s)	891
Bse3DI	GCAATG	1 cut(s)	1062
Bse8I	GATNNNNATC	2 cut(s)	420, 453
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	558, 843, 1078
BseGI	GGATG	5 cut(s)	10, 530, 614, 839, 985
BseJI	GATNNNNATC	2 cut(s)	420, 453
BseLI	CCNNNNNNNGG	4 cut(s)	176, 833, 974, 995
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	5 cut(s)	73, 262, 311, 1037, 1295
BseNI	ACTGG	1 cut(s)	891
BseSI	GKGCMC	1 cut(s)	1002
BsgI	GTGCAG	4 cut(s)	360, 577, 849, 1273
BshFI	GGCC	2 cut(s)	557, 848
BshNI	GGYRCC	1 cut(s)	999
BsiWI	CGTACG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	4 cut(s)	176, 833, 974, 995
BsmAI	GTCTC	2 cut(s)	487, 1088
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	557, 848
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	60, 1002
Bsp1720I	GCTNAGC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	6 cut(s)	170, 173, 827, 898, 989, 1052
BspANI	GGCC	2 cut(s)	557, 848
BspCNI	CTCAG	5 cut(s)	72, 261, 310, 1036, 1294
BspHI	TCATGA	3 cut(s)	412, 418, 451
BspLI	GGNNCC	4 cut(s)	462, 1001, 1222, 1267
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	999
BspTNI	GGTCTC	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	1062
BsrI	ACTGG	1 cut(s)	891
BssECI	CCNNGG	3 cut(s)	558, 843, 1078
BssT1I	CCWWGG	2 cut(s)	558, 843
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	545, 947, 1082, 1232
Bst6I	CTCTTC	5 cut(s)	204, 228, 699, 820, 825
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	59, 248, 297, 1023, 1281
BstDSI	CCRYGG	2 cut(s)	843, 1078
BstF5I	GGATG	5 cut(s)	10, 530, 614, 839, 985
BstH2I	RGCGCY	1 cut(s)	1043
BstHHI	GCGC	3 cut(s)	306, 1042, 1253
BstMAI	GTCTC	2 cut(s)	487, 1088
BstMWI	GCNNNNNNNGC	4 cut(s)	298, 740, 997, 1145
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	2 cut(s)	801, 1134
BstSLI	GKGCMC	1 cut(s)	1002
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	557, 848
BtgI	CCRYGG	2 cut(s)	843, 1078
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	5 cut(s)	10, 530, 614, 839, 985
BtsIMutI	CAGTG	1 cut(s)	884
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	3 cut(s)	412, 418, 451
CfoI	GCGC	3 cut(s)	306, 1042, 1253
Cfr13I	GGNCC	2 cut(s)	40, 262
Csp6I	GTAC	2 cut(s)	488, 1206
CviQI	GTAC	2 cut(s)	488, 1206
DdeI	CTNAG	5 cut(s)	59, 248, 297, 1023, 1281
EaeI	YGGCCR	2 cut(s)	555, 846
Eam1104I	CTCTTC	5 cut(s)	204, 228, 699, 820, 825
EarI	CTCTTC	5 cut(s)	204, 228, 699, 820, 825
Eco130I	CCWWGG	2 cut(s)	558, 843
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	487
Eco32I	GATATC	2 cut(s)	711, 753
Eco47I	GGWCC	2 cut(s)	40, 262
Eco47III	AGCGCT	1 cut(s)	1041
Eco57I	CTGAAG	3 cut(s)	185, 806, 1089
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	2 cut(s)	711, 753
EcoT14I	CCWWGG	2 cut(s)	558, 843
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	558, 843
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	558
FauI	CCCGC	1 cut(s)	905
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	5 cut(s)	309, 415, 421, 448, 454
FokI	GGATG	5 cut(s)	17, 537, 621, 826, 972
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	4 cut(s)	83, 477, 1064, 1142
FspI	TGCGCA	1 cut(s)	305
GlaI	GCGC	3 cut(s)	305, 1041, 1252
HaeII	RGCGCY	1 cut(s)	1043
HaeIII	GGCC	2 cut(s)	557, 848
HhaI	GCGC	3 cut(s)	306, 1042, 1253
Hin6I	GCGC	3 cut(s)	304, 1040, 1251
HinP1I	GCGC	3 cut(s)	304, 1040, 1251
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	1131
Hpy188I	TCNGA	9 cut(s)	40, 73, 251, 314, 363, 502, 621, 660, 1120
Hpy188III	TCNNGA	5 cut(s)	356, 413, 419, 425, 452
Hpy8I	GTNNAC	1 cut(s)	1131
HpyAV	CCTTC	3 cut(s)	382, 465, 668
HpyCH4III	ACNGT	4 cut(s)	545, 947, 1082, 1232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	298, 740, 997, 1145
HpyF3I	CTNAG	5 cut(s)	59, 248, 297, 1023, 1281
HspAI	GCGC	3 cut(s)	304, 1040, 1251
Ksp22I	TGATCA	5 cut(s)	309, 415, 421, 448, 454
LmnI	GCTCC	2 cut(s)	511, 1271
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	4 cut(s)	83, 477, 1064, 1142
MaeIII	GTNAC	3 cut(s)	17, 216, 442
MbiI	CCGCTC	1 cut(s)	829
MboII	GAAGA	7 cut(s)	116, 191, 245, 356, 686, 807, 812
MhlI	GDGCHC	2 cut(s)	60, 1002
MlsI	TGGCCA	2 cut(s)	557, 848
MluCI	AATT	1 cut(s)	1015
MluNI	TGGCCA	2 cut(s)	557, 848
MnlI	CCTC	9 cut(s)	528, 637, 702, 871, 886, 1032, 1163, 1237, 1290
Mox20I	TGGCCA	2 cut(s)	557, 848
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	2 cut(s)	557, 848
MseI	TTAA	3 cut(s)	467, 1185, 1227
MslI	CAYNNNNRTG	2 cut(s)	417, 1032
Msp20I	TGGCCA	2 cut(s)	557, 848
MspA1I	CMGCKG	5 cut(s)	301, 328, 440, 704, 1052
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	298, 740, 997, 1145
NcoI	CCATGG	1 cut(s)	843
NdeI	CATATG	1 cut(s)	670
NlaIV	GGNNCC	4 cut(s)	462, 1001, 1222, 1267
NmuCI	GTSAC	1 cut(s)	17
NsbI	TGCGCA	1 cut(s)	305
PagI	TCATGA	3 cut(s)	412, 418, 451
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	238
Pfl23II	CGTACG	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	1185
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspLI	CGTACG	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	462, 1001, 1222, 1267
PspPI	GGNCC	2 cut(s)	40, 262
PstNI	CAGNNNCTG	1 cut(s)	704
PvuII	CAGCTG	4 cut(s)	301, 328, 440, 704
RsaI	GTAC	2 cut(s)	489, 1207
RsaNI	GTAC	2 cut(s)	488, 1206
RseI	CAYNNNNRTG	2 cut(s)	417, 1032
SaqAI	TTAA	3 cut(s)	467, 1185, 1227
Sau96I	GGNCC	2 cut(s)	40, 262
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	60, 1002
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	2 cut(s)	801, 1134
SinI	GGWCC	2 cut(s)	40, 262
SmiMI	CAYNNNNRTG	2 cut(s)	417, 1032
SmlI	CTYRAG	1 cut(s)	1156
SmoI	CTYRAG	1 cut(s)	1156
Sse9I	AATT	1 cut(s)	1015
SsiI	CCGC	6 cut(s)	170, 173, 827, 898, 989, 1052
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	4 cut(s)	83, 477, 1064, 1142
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	2 cut(s)	558, 843
TaaI	ACNGT	4 cut(s)	545, 947, 1082, 1232
TaqI	TCGA	2 cut(s)	1072, 1085
TasI	AATT	1 cut(s)	1015
TauI	GCSGC	3 cut(s)	175, 829, 1055
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	467, 1185, 1227
Tru9I	TTAA	3 cut(s)	467, 1185, 1227
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	5 cut(s)	21, 687, 828, 928, 1181
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	891
VpaK11BI	GGWCC	2 cut(s)	40, 262
VspI	ATTAAT	1 cut(s)	1185
XapI	RAATTY	1 cut(s)	1015
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	83, 477, 1064, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.