Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000129.1

Orthogroup ID

OG0002724

Physical Location & Seq

Genomic Coordinates Reverse (-)

8256 .. 10636

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000129.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

atggccaaaggaggtggactctccattgattcagatccaattggctacttgtccctccacaaacccatagtcctcaactcctttcaagatcaataccctaattctagttctagtacccacaaacaacacctctctgggttgtcaatggatcatcacacccaccaagcccggtcaccaccaccgccccagactctgcaattctcagtcaacctcaactgcaccgacgataacgacgaccgagaaaactcgccgccgcaatcggacgacaaccagcgcaaggtcgtagacgagagggacttctttgccgataacaacaacaaggccgaggaagcttccactgagaaaatggacttcgacgatggcccttccggcatggaattcaacgtaaacactgggttaaatcttctcatcacaaacactagtagtgaccagtcagttgtggatgatagcatttcgtcgagcatggaggataaaagagccaaaagtgagctggctgttcttcaagctgagctggagaggatgaacgcggagaatcagaggctgagagaaatgcttaatcaggtcactaccaattacagtgctctacaagtgcatttgctgagtttgatgcaaaaccagaaggctgagaacagcgtggaagtggaagagaagaagcttaataatggcagcggatcgcagatggtggttccgaggcagtttatggatcttggtttggctgcaaatggggatgccgaagagccgtcgcattcttcttcggatgagagaagccgggaacggtctggatcaggtgataatggaaaggttggtgctgggaatgttggtgatgaggggcctgcgtttgatcaggagaagaaggaatttggtcgggggattagtgggagagaggagagtcctgatcaacaaacgcagagttggggacctaacaaagttccgagactcaattctccaaaggaggttgatcaaactgaggctacaatgaggaaggctcgggtttctgttagagctcgatcagaggcacccatgatcactgatggatgtcaatggcgtaagtacgggcaaaagatggcgaaaggaaacccatgtcctcgagcttattatagatgcaccatggctgctggttgcccagttcgaaaacaagtacaaagatgtgctgaagataggacaatcctcatcacaacatatgaaggcaatcacaaccacccattgccaccagccgccatggcaatggcgtccaccacttcatctgcagcccggatgctgctttccgggtctatgccaagcgcggatggcctaatggactcaaacttcctcactaggaccatcctcccatgctcctcaagcatggccacaatctcagcctcagctccattccccactgttacattggacttaacacagtccccaaaccctttacagttccaaaggccaccaggccaattcaacatcccattcccaaacccgtctcagaacttgaccaatggacctgtctcattgctgccccaaatcttcggtcaggcgctttacaaccagtctaagttttctggccttcaaatgtcacaggacatggaccgtaatgcccatcctcaacaagctcagcaaggacagcagcagaactcattggccgatactgttactgctgccactgccgctatcgcatccgatccaaacttcactgcagctctagcagccgccatcacctccatcattggcaatgctcatccaaacaacaatggtaacaattctaccaccaacaacaacacaagcaacagcagtggcaatggaaacaacagcagcaaattgcaacaacaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010036 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042493 GO:0042594 GO:0044212 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071496 GO:0080029 GO:0080090 GO:0080169 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

604

Amino Acids

65.48

Weight (kDa)

5.29

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01720
fragaria_vesca	FvH4_1g26200 FvH4_1g26200 FvH4_6g42870 FvH4_6g42870 FvH4_6g42870
malus_domestica	MD09G1111200.v1.1 MD17G1099000.v1.1
prunus_persica	Prupe.3G002300_v2.0.a1 Prupe.3G214800_v2.0.a1
pyrus_communis	pycom09g03370
rosa_chinensis	RchiOBHm_Chr2g0158801 RchiOBHm_Chr3g0485691 RchiOBHm_Chr3g0485711
rosa_laevigata	RLG00000021114 RLG00000023129 RLG00000023130
rosa_multiflora	Rmu_sc0003005.1_g000017 Rmu_sc0003005.1_g000026 Rmu_ssc0000129.1_g000002
rosa_roxburghii	Rroxscaffold_6G00396400 Rroxscaffold_6G00396500 Rroxscaffold_6G00396810 Rroxscaffold_6G00396830
rosa_rugosa	Rorug02G0472600 Rorug03G0220800
rosa_samantha	Rh2AG538400 Rh2BG551100 Rh2CG521600 Rh2DG560900 Rh3AG270000 Rh3AG270200 Rh3BG305800 Rh3CG303900 Rh3CG304200 Rh3DG300200
rosa_wichuraiana	Rw0G006930 Rw0G009910 Rw2G044560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	527, 1283
AciI	CCGC	9 cut(s)	182, 251, 254, 527, 669, 1215, 1283, 1647, 1689
AclWI	GGATC	6 cut(s)	29, 156, 679, 711, 790, 1655
AcoI	YGGCCR	3 cut(s)	3, 1344, 1620
AcsI	RAATTY	2 cut(s)	377, 857
AcuI	CTGAAG	1 cut(s)	1173
AcyI	GRCGYC	1 cut(s)	1229
AfaI	GTAC	3 cut(s)	115, 1052, 1140
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	5 cut(s)	86, 382, 503, 1441, 1550
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	1429
Alw21I	GWGCWC	2 cut(s)	583, 1006
Alw26I	GTCTC	3 cut(s)	928, 1467, 1492
AlwI	GGATC	6 cut(s)	29, 156, 679, 711, 790, 1655
AlwNI	CAGNNNCTG	2 cut(s)	193, 541
Ama87I	CYCGRG	2 cut(s)	987, 1086
ApoI	RAATTY	2 cut(s)	377, 857
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 1495, 1527
AspLEI	GCGC	3 cut(s)	276, 1283, 1519
AspS9I	GGNCC	6 cut(s)	362, 830, 917, 1317, 1481, 1567
AsuC2I	CCSGG	4 cut(s)	169, 770, 1252, 1267
AsuHPI	GGTGA	4 cut(s)	165, 800, 833, 1687
AsuII	TTCGAA	1 cut(s)	1129
AvaI	CYCGRG	2 cut(s)	987, 1086
AvaII	GGWCC	4 cut(s)	917, 1317, 1481, 1567
BalI	TGGCCA	2 cut(s)	5, 1346
BanI	GGYRCC	1 cut(s)	1015
BanII	GRGCYC	1 cut(s)	1006
Bbv12I	GWGCWC	2 cut(s)	583, 1006
BbvCI	CCTCAGC	1 cut(s)	1360
BccI	CCATC	9 cut(s)	353, 673, 1025, 1057, 1280, 1328, 1587, 1700, 1709
BceAI	ACGGC	1 cut(s)	724
BciT130I	CCWGG	1 cut(s)	1431
BclI	TGATCA	4 cut(s)	841, 895, 958, 1023
BcnI	CCSGG	4 cut(s)	169, 770, 1252, 1267
BcoDI	GTCTC	3 cut(s)	928, 1467, 1492
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	5 cut(s)	105, 111, 420, 1314, 1682
BfmI	CTRYAG	2 cut(s)	1245, 1674
BfoI	RGCGCY	1 cut(s)	1520
BglI	GCCNNNNNGGC	2 cut(s)	369, 1220
BlpI	GCTNAGC	2 cut(s)	507, 1593
Bme1390I	CCNGG	5 cut(s)	169, 770, 1252, 1267, 1431
Bme18I	GGWCC	4 cut(s)	917, 1317, 1481, 1567
BmeT110I	CYCGRG	2 cut(s)	987, 1086
BmgT120I	GGNCC	6 cut(s)	362, 830, 917, 1317, 1481, 1567
BmiI	GGNNCC	4 cut(s)	687, 831, 918, 1017
BmrFI	CCNGG	5 cut(s)	169, 770, 1252, 1267, 1431
BmrI	ACTGGG	2 cut(s)	402, 1118
BmsI	GCATC	5 cut(s)	597, 718, 1091, 1245, 1664
BmuI	ACTGGG	2 cut(s)	402, 1118
BplI	GAGNNNNNCTC	3 cut(s)	35, 970, 1002
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	1360
Bpu1102I	GCTNAGC	2 cut(s)	507, 1593
Bpu14I	TTCGAA	1 cut(s)	1129
BpuEI	CTTGAG	1 cut(s)	1321
BpuMI	CCSGG	4 cut(s)	169, 770, 1252, 1267
BsaBI	GATNNNNATC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	1229
BsaJI	CCNNGG	4 cut(s)	324, 689, 1107, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	4 cut(s)	397, 430, 1124, 1528
Bse3DI	GCAATG	5 cut(s)	1202, 1230, 1490, 1717, 1783
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	1431
BseDI	CCNNGG	4 cut(s)	324, 689, 1107, 1218
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	5 cut(s)	1202, 1230, 1490, 1717, 1783
BseNI	ACTGG	4 cut(s)	397, 430, 1124, 1528
BseRI	GAGGAG	2 cut(s)	899, 1324
BseYI	CCCAGC	1 cut(s)	809
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	2 cut(s)	527, 1283
Bsh1285I	CGRYCG	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	1015
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	583, 1006
BsiHKCI	CYCGRG	2 cut(s)	987, 1086
BsiSI	CCGG	5 cut(s)	169, 369, 769, 1252, 1266
BslFI	GGGAC	4 cut(s)	37, 308, 930, 1384
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	3 cut(s)	928, 1467, 1492
BsmBI	CGTCTC	1 cut(s)	1467
BsmFI	GGGAC	4 cut(s)	37, 308, 930, 1384
BsmI	GAATGC	1 cut(s)	745
BsoBI	CYCGRG	2 cut(s)	987, 1086
Bsp119I	TTCGAA	1 cut(s)	1129
Bsp1286I	GDGCHC	2 cut(s)	583, 1006
Bsp1720I	GCTNAGC	2 cut(s)	507, 1593
Bsp19I	CCATGG	2 cut(s)	1107, 1218
BspACI	CCGC	9 cut(s)	182, 251, 254, 527, 669, 1215, 1283, 1647, 1689
BspFNI	CGCG	2 cut(s)	527, 1283
BspLI	GGNNCC	4 cut(s)	687, 831, 918, 1017
BspMAI	CTGCAG	2 cut(s)	1249, 1678
BspPI	GGATC	6 cut(s)	29, 156, 679, 711, 790, 1655
BspQI	GCTCTTC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	1129
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	5 cut(s)	1202, 1230, 1490, 1717, 1783
BsrI	ACTGG	4 cut(s)	397, 430, 1124, 1528
BssECI	CCNNGG	4 cut(s)	324, 689, 1107, 1218
BssNI	GRCGYC	1 cut(s)	1229
BssT1I	CCWWGG	2 cut(s)	1107, 1218
Bst2UI	CCWGG	1 cut(s)	1431
Bst4CI	ACNGT	7 cut(s)	578, 777, 1378, 1398, 1416, 1571, 1630
Bst6I	CTCTTC	2 cut(s)	639, 729
BstACI	GRCGYC	1 cut(s)	1229
BstBI	TTCGAA	1 cut(s)	1129
BstC8I	GCNNGC	2 cut(s)	492, 834
BstDSI	CCRYGG	2 cut(s)	1107, 1218
BstEII	GGTNACC	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	527, 1283
BstH2I	RGCGCY	1 cut(s)	1520
BstHHI	GCGC	3 cut(s)	276, 1283, 1519
BstMAI	GTCTC	3 cut(s)	928, 1467, 1492
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	1431
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	5 cut(s)	167, 768, 1250, 1265, 1429
BstSFI	CTRYAG	2 cut(s)	1245, 1674
BstUI	CGCG	2 cut(s)	527, 1283
BstX2I	RGATCY	2 cut(s)	34, 703
BstXI	CCANNNNNNTGG	1 cut(s)	1225
BstYI	RGATCY	2 cut(s)	34, 703
BtgI	CCRYGG	2 cut(s)	1107, 1218
BtsI	GCAGTG	3 cut(s)	1641, 1671, 1777
BtsIMutI	CAGTG	8 cut(s)	336, 390, 583, 1026, 1374, 1641, 1671, 1777
Cac8I	GCNNGC	2 cut(s)	492, 834
CaiI	CAGNNNCTG	2 cut(s)	193, 541
CfoI	GCGC	3 cut(s)	276, 1283, 1519
Cfr13I	GGNCC	6 cut(s)	362, 830, 917, 1317, 1481, 1567
CseI	GACGC	1 cut(s)	1218
Csp6I	GTAC	3 cut(s)	114, 1051, 1139
CspCI	CAANNNNNGTGG	3 cut(s)	30, 1753, 1788
CviAII	CATG	9 cut(s)	373, 463, 1021, 1080, 1108, 1219, 1329, 1342, 1564
CviQI	GTAC	3 cut(s)	114, 1051, 1139
EaeI	YGGCCR	3 cut(s)	3, 1344, 1620
Eam1104I	CTCTTC	2 cut(s)	639, 729
EarI	CTCTTC	2 cut(s)	639, 729
Ecl136II	GAGCTC	1 cut(s)	1004
Eco130I	CCWWGG	2 cut(s)	1107, 1218
Eco24I	GRGCYC	1 cut(s)	1006
Eco47I	GGWCC	4 cut(s)	917, 1317, 1481, 1567
Eco53kI	GAGCTC	1 cut(s)	1004
Eco57I	CTGAAG	1 cut(s)	1173
Eco88I	CYCGRG	2 cut(s)	987, 1086
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	1004
EcoO109I	RGGNCCY	2 cut(s)	830, 917
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	1429
EcoT14I	CCWWGG	2 cut(s)	1107, 1218
EcoT38I	GRGCYC	1 cut(s)	1006
ErhI	CCWWGG	2 cut(s)	1107, 1218
Esp3I	CGTCTC	1 cut(s)	1467
FaeI	CATG	9 cut(s)	376, 466, 1024, 1083, 1111, 1222, 1332, 1345, 1567
FaqI	GGGAC	4 cut(s)	37, 308, 930, 1384
FatI	CATG	9 cut(s)	372, 462, 1020, 1079, 1107, 1218, 1328, 1341, 1563
FauNDI	CATATG	1 cut(s)	1180
FbaI	TGATCA	4 cut(s)	841, 895, 958, 1023
FblI	GTMKAC	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	1006
FspBI	CTAG	5 cut(s)	105, 111, 420, 1314, 1682
GlaI	GCGC	3 cut(s)	275, 1282, 1518
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	1520
HapII	CCGG	5 cut(s)	169, 369, 769, 1252, 1266
HgaI	GACGC	1 cut(s)	1218
HhaI	GCGC	3 cut(s)	276, 1283, 1519
Hin1I	GRCGYC	1 cut(s)	1229
Hin1II	CATG	9 cut(s)	376, 466, 1024, 1083, 1111, 1222, 1332, 1345, 1567
Hin6I	GCGC	3 cut(s)	274, 1281, 1517
HinP1I	GCGC	3 cut(s)	274, 1281, 1517
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	330, 653
HinfI	GANTC	7 cut(s)	18, 29, 190, 532, 889, 936, 1298
HpaII	CCGG	5 cut(s)	169, 369, 769, 1252, 1266
HphI	GGTGA	4 cut(s)	165, 800, 833, 1687
Hpy166II	GTNNAC	5 cut(s)	17, 208, 286, 388, 1233
Hpy188I	TCNGA	9 cut(s)	34, 262, 537, 690, 757, 933, 1012, 1467, 1660
Hpy188III	TCNNGA	4 cut(s)	86, 780, 845, 893
Hpy8I	GTNNAC	5 cut(s)	17, 208, 286, 388, 1233
Hpy99I	CGWCG	5 cut(s)	227, 236, 359, 460, 745
HpyAV	CCTTC	6 cut(s)	375, 613, 847, 976, 1178, 1556
HpyCH4III	ACNGT	7 cut(s)	578, 777, 1378, 1398, 1416, 1571, 1630
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	9 cut(s)	196, 219, 592, 610, 719, 1104, 1247, 1676, 1801
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	1229
Hsp92II	CATG	9 cut(s)	376, 466, 1024, 1083, 1111, 1222, 1332, 1345, 1567
HspAI	GCGC	3 cut(s)	274, 1281, 1517
Ksp22I	TGATCA	4 cut(s)	841, 895, 958, 1023
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	2 cut(s)	1337, 1369
LweI	GCATC	5 cut(s)	597, 718, 1091, 1245, 1664
MaeI	CTAG	5 cut(s)	105, 111, 420, 1314, 1682
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	7 cut(s)	171, 425, 562, 1378, 1554, 1630, 1733
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	34, 703
MhlI	GDGCHC	2 cut(s)	583, 1006
MlsI	TGGCCA	2 cut(s)	5, 1346
MluNI	TGGCCA	2 cut(s)	5, 1346
MlyI	GAGTC	5 cut(s)	12, 184, 898, 930, 1292
Mox20I	TGGCCA	2 cut(s)	5, 1346
MscI	TGGCCA	2 cut(s)	5, 1346
MseI	TTAA	4 cut(s)	398, 555, 657, 1391
MslI	CAYNNNNRTG	1 cut(s)	1223
Msp20I	TGGCCA	2 cut(s)	5, 1346
MspA1I	CMGCKG	1 cut(s)	669
MspI	CCGG	5 cut(s)	169, 369, 769, 1252, 1266
MspR9I	CCNGG	5 cut(s)	169, 770, 1252, 1267, 1431
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	1431
MvnI	CGCG	2 cut(s)	527, 1283
NciI	CCSGG	4 cut(s)	169, 770, 1252, 1267
NcoI	CCATGG	2 cut(s)	1107, 1218
NdeI	CATATG	1 cut(s)	1180
NlaIII	CATG	9 cut(s)	376, 466, 1024, 1083, 1111, 1222, 1332, 1345, 1567
NlaIV	GGNNCC	4 cut(s)	687, 831, 918, 1017
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	4 cut(s)	171, 425, 562, 1554
NspV	TTCGAA	1 cut(s)	1129
PaeR7I	CTCGAG	1 cut(s)	1086
PciSI	GCTCTTC	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	29, 532
PleI	GAGTC	5 cut(s)	12, 184, 897, 930, 1292
PpsI	GAGTC	5 cut(s)	12, 184, 897, 930, 1292
PpuMI	RGGWCCY	1 cut(s)	917
Psp124BI	GAGCTC	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	1 cut(s)	1429
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	1429
PspN4I	GGNNCC	4 cut(s)	687, 831, 918, 1017
PspPI	GGNCC	6 cut(s)	362, 830, 917, 1317, 1481, 1567
PspPPI	RGGWCCY	1 cut(s)	917
PspXI	VCTCGAGB	1 cut(s)	1086
PstI	CTGCAG	2 cut(s)	1249, 1678
PstNI	CAGNNNCTG	2 cut(s)	193, 541
PsuI	RGATCY	2 cut(s)	34, 703
RsaI	GTAC	3 cut(s)	115, 1052, 1140
RsaNI	GTAC	3 cut(s)	114, 1051, 1139
RseI	CAYNNNNRTG	1 cut(s)	1223
SacI	GAGCTC	1 cut(s)	1006
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	4 cut(s)	398, 555, 657, 1391
Sau96I	GGNCC	6 cut(s)	362, 830, 917, 1317, 1481, 1567
SchI	GAGTC	5 cut(s)	12, 184, 898, 930, 1292
ScrFI	CCNGG	5 cut(s)	169, 770, 1252, 1267, 1431
SduI	GDGCHC	2 cut(s)	583, 1006
SfaNI	GCATC	5 cut(s)	597, 718, 1091, 1245, 1664
SfcI	CTRYAG	2 cut(s)	1245, 1674
Sfr274I	CTCGAG	1 cut(s)	1086
SfuI	TTCGAA	1 cut(s)	1129
SinI	GGWCC	4 cut(s)	917, 1317, 1481, 1567
SlaI	CTCGAG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	1223
SmlI	CTYRAG	2 cut(s)	1086, 1336
SmoI	CTYRAG	2 cut(s)	1086, 1336
SpeI	ACTAGT	1 cut(s)	419
SsiI	CCGC	9 cut(s)	182, 251, 254, 527, 669, 1215, 1283, 1647, 1689
SspMI	CTAG	5 cut(s)	105, 111, 420, 1314, 1682
SstI	GAGCTC	1 cut(s)	1006
StyD4I	CCNGG	5 cut(s)	167, 768, 1250, 1265, 1429
StyI	CCWWGG	2 cut(s)	1107, 1218
TaaI	ACNGT	7 cut(s)	578, 777, 1378, 1398, 1416, 1571, 1630
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	354, 458, 1006, 1087, 1129
TaqII	GACCGA	2 cut(s)	252, 1499
TatI	WGTACW	1 cut(s)	1138
TauI	GCSGC	5 cut(s)	253, 256, 1217, 1649, 1691
TfiI	GAWTC	2 cut(s)	29, 532
Tru1I	TTAA	4 cut(s)	398, 555, 657, 1391
Tru9I	TTAA	4 cut(s)	398, 555, 657, 1391
TscAI	CASTG	8 cut(s)	343, 397, 583, 1033, 1381, 1648, 1678, 1777
TseFI	GTSAC	4 cut(s)	171, 425, 562, 1554
Tsp45I	GTSAC	4 cut(s)	171, 425, 562, 1554
TspDTI	ATGAA	3 cut(s)	536, 1197, 1230
TspRI	CASTG	8 cut(s)	343, 397, 583, 1033, 1381, 1648, 1678, 1777
VpaK11BI	GGWCC	4 cut(s)	917, 1317, 1481, 1567
XapI	RAATTY	2 cut(s)	377, 857
XcmI	CCANNNNNNNNNTGG	3 cut(s)	343, 487, 1381
XhoI	CTCGAG	1 cut(s)	1086
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	5 cut(s)	105, 111, 420, 1314, 1682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.