pycom09g03610

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008120
Physical Location & Seq
Reverse (-)
2670003 .. 2671166
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03610.2

Sequence Viewer

Length: 324 bp
ATGACTAGCCCGCGTTTTGGCTCTTCGACAGCTGTTCGTGACGTGAGATGTCCACCATGTTTGAGGGAGGATCATGTGGTTACACTTTGTCCGTACCGGTACTATGTCCCAAAGGGTGAAAAAGTTGGCCCCGGCGGTAAACTCGTTTGCATATGTTGTCAAAAAGAGGGTGGCCATCCTGGTGAGGAATGGGTAGGACAAGCTGTTGGTAATTATTGCAGGATTTGTTCTTCTACTTATGACCACAAGACTGAAGACTGCCCTGTGAAAAAGGGAAGAGAGATAGTAGGAGGCAAGTTCCAATCGGCTATGGTTGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

8.38

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 11, 135
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 95, 101
AfiI CCNNNNNNNGG 1 cut(s) 17
AgeI ACCGGT 1 cut(s) 96
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 32, 203
AluI AGCT 2 cut(s) 32, 203
AlwI GGATC 1 cut(s) 78
AoxI GGCC 2 cut(s) 127, 172
AsiGI ACCGGT 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 128, 194
BalI TGGCCA 1 cut(s) 174
BauI CACGAG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 132, 180
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 132, 180
BpiI GAAGAC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 96
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 2 cut(s) 129, 174
BshTI ACCGGT 1 cut(s) 96
BsiSI CCGG 2 cut(s) 97, 132
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 2 cut(s) 129, 174
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 11, 135
BspANI GGCC 2 cut(s) 129, 174
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 28, 271
BstC8I GCNNGC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 130, 178
BstUI CGCG 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 2 cut(s) 129, 174
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 94, 100
CspAI ACCGGT 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 2 cut(s) 57, 74
CviJI RGCY 7 cut(s) 9, 21, 32, 129, 174, 203, 308
CviKI_1 RGCY 7 cut(s) 9, 21, 32, 129, 174, 203, 308
CviQI GTAC 2 cut(s) 94, 100
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 28, 271
EarI CTCTTC 2 cut(s) 28, 271
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 60, 77
FaiI YATR 7 cut(s) 58, 75, 105, 152, 154, 240, 311
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 56, 73
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 152
FokI GGATG 1 cut(s) 162
FspBI CTAG 1 cut(s) 6
HaeIII GGCC 2 cut(s) 129, 174
HapII CCGG 2 cut(s) 97, 132
Hin1II CATG 2 cut(s) 60, 77
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 317
HpaII CCGG 2 cut(s) 97, 132
HphI GGTGA 2 cut(s) 128, 194
Hpy166II GTNNAC 3 cut(s) 53, 140, 316
Hpy188III TCNNGA 2 cut(s) 38, 321
Hpy8I GTNNAC 3 cut(s) 53, 140, 316
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 150, 219
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 60, 77
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 110, 145, 165, 192, 205, 276
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 38, 79
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 4 cut(s) 15, 222, 266, 288
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 57, 61, 160, 178, 284
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 97, 132
MspR9I CCNGG 2 cut(s) 132, 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 13
NciI CCSGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 60, 77
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 96
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 95, 101
RsaNI GTAC 2 cut(s) 94, 100
RseI CAYNNNNRTG 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 132, 180
SetI ASST 3 cut(s) 34, 45, 205
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 11, 135
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 130, 178
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 211
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 81
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.