RLG00000034925

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008120
Physical Location & Seq
Forward (+)
57142820 .. 57147143
4324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034925

Sequence Viewer

Length: 1158 bp
ATGACATGGTGCCACTCGATTCTCCGTAGGGGACGGCAACCGCAACCAGAGCCATGGCAGGAATCTGAGTTGGCGCCAATATTGCCATCAGGGGAGTACTTTCTAGGCCTCCCTCGCTTCGTCTTCCTCGCGGAGGCCGTTGAACAGTCGATGTTAAACCCTCCGCTGCCGCCGCAAGGCCTCAACGATTCGTCTAACGGGCTTGGGCTCATGGAGTCCAGCCACTGCGGCTTCGATGTGGGATGCTGCTACTGGGCCACCGTGTTGAATTGGAATCGACACGAATTCGGCCCGCTGCCCAACATCGCGGCCGAGTTGTTGTTGTTGTTGTTGGCGGTGGCGGCGGTGTTGTTGTTGGGGTTTATGCTGGGGTTGGGAGAGGAGGGAAGCAAGATACATAGAAAGGGACAGGACCCATTTACGAGTTACGGCAGGATTGAGTTTTTGTTCCATCCTTTTCTTCCTGCAACTAAACCCGTCTCTCCATCAATACAAGACCAAGCCTTCCACACCATGCCCACGCAGATTAGCTACAGCAAGGGAGCACGAGAAGTCAAGGTGGAAGAAGTCATTTTGAAATTAAGATCCGACCTGAGCCAGAAGAGTTCGAATTCCCTGCAAATCTCTAGGCCCCGGGAGATCAATATTCAAGGAGGAGTACTGACGGTGGAAGACTGGCAGGAGAAATTCAGATACGTGAAATCAGGTTACGGTCATGGTCACGGTCAGGGCGAGAATCCAACCCAGCAGATCGATAAGGACCCGGAGATCAATATTGAAGCTGGTGGTAGTGGTAGAAGCACAGATGATCCTCCTGCAAGGAGTTGGGAAGATGAATCAGATGATGATATGCTGAGGAGCATATATGAAGTACCATTTGCTGATGAGTTTGACGGACCTCTTGCAAGATGTGAGCTTTGTGGTCAGACCGTATCTCACTATGCTGCAAGCTGCCCCTACTTGATTCATTTGCCACACCACGTAACTCTTCCTCGTGGCTATGACAGAGCTTGTAAGTGCTGTGGTACCAAGGATGGCCACCCTGGTCAGAAATGGGAGGGATTTGCTGTCCGCAAGTATTGTTTTAATTGTTTTCGGGGAGGTGACCACTGGGATGGTGACCCAGAATGTCCCAAGAAAAAGCAACGTATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

43.05

Weight (kDa)

5.71

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1025
AccB1I GGYRCC 3 cut(s) 9, 73, 1025
AccII CGCG 2 cut(s) 131, 308
AclWI GGATC 2 cut(s) 579, 803
AcoI YGGCCR 2 cut(s) 309, 1036
AcsI RAATTY 3 cut(s) 284, 610, 686
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 4 cut(s) 98, 660, 873, 1027
AfiI CCNNNNNNNGG 2 cut(s) 133, 176
AgsI TTSAA 5 cut(s) 143, 268, 577, 650, 779
AjnI CCWGG 1 cut(s) 1042
AluBI AGCT 5 cut(s) 531, 782, 916, 951, 1010
AluI AGCT 5 cut(s) 531, 782, 916, 951, 1010
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 2 cut(s) 579, 803
AlwNI CAGNNNCTG 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 8 cut(s) 106, 135, 178, 255, 289, 309, 629, 1036
ApeKI GCWGC 5 cut(s) 166, 246, 295, 944, 951
ApoI RAATTY 3 cut(s) 284, 610, 686
Asp718I GGTACC 1 cut(s) 1025
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 6 cut(s) 255, 290, 412, 630, 760, 896
AsuC2I CCSGG 3 cut(s) 634, 635, 764
AsuHPI GGTGA 2 cut(s) 1115, 1130
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 3 cut(s) 412, 760, 896
BalI TGGCCA 1 cut(s) 1038
BanI GGYRCC 3 cut(s) 9, 73, 1025
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 2 cut(s) 546, 993
BbsI GAAGAC 2 cut(s) 115, 678
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 1 cut(s) 854
BbvI GCAGC 5 cut(s) 153, 233, 282, 931, 938
BccI CCATC 5 cut(s) 94, 459, 493, 1028, 1109
BceAI ACGGC 3 cut(s) 50, 122, 445
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 1044
BcnI CCSGG 3 cut(s) 634, 635, 764
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 2 cut(s) 104, 627
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 77
BglI GCCNNNNNGGC 1 cut(s) 228
BmcAI AGTACT 2 cut(s) 98, 660
Bme1390I CCNGG 4 cut(s) 634, 635, 764, 1044
Bme18I GGWCC 3 cut(s) 412, 760, 896
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 6 cut(s) 255, 290, 412, 630, 760, 896
BmiI GGNNCC 6 cut(s) 11, 75, 414, 632, 762, 1027
BmrFI CCNGG 4 cut(s) 634, 635, 764, 1044
BmrI ACTGGG 2 cut(s) 262, 1120
BmsI GCATC 1 cut(s) 233
BmuI ACTGGG 2 cut(s) 262, 1120
BpiI GAAGAC 2 cut(s) 115, 678
Bpu10I CCTNAGC 2 cut(s) 593, 854
Bpu14I TTCGAA 1 cut(s) 608
BpuMI CCSGG 3 cut(s) 634, 635, 764
Bsa29I ATCGAT 1 cut(s) 753
BsaAI YACGTR 2 cut(s) 697, 982
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 5 cut(s) 53, 632, 633, 1029, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 176
Bse1I ACTGG 3 cut(s) 257, 680, 1115
BseBI CCWGG 1 cut(s) 1044
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 5 cut(s) 53, 632, 633, 1029, 1042
BseGI GGATG 4 cut(s) 248, 451, 1039, 1120
BseLI CCNNNNNNNGG 2 cut(s) 133, 176
BseMII CTCAG 3 cut(s) 57, 584, 845
BseNI ACTGG 3 cut(s) 257, 680, 1115
BseRI GAGGAG 3 cut(s) 395, 669, 871
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 5 cut(s) 153, 233, 282, 931, 938
BseYI CCCAGC 2 cut(s) 367, 744
Bsh1236I CGCG 2 cut(s) 131, 308
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 8 cut(s) 108, 137, 180, 257, 291, 311, 631, 1038
BshNI GGYRCC 3 cut(s) 9, 73, 1025
BshVI ATCGAT 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 2 cut(s) 634, 764
BslFI GGGAC 3 cut(s) 45, 420, 1116
BslI CCNNNNNNNGG 2 cut(s) 133, 176
BsmAI GTCTC 1 cut(s) 484
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 3 cut(s) 45, 420, 1116
BsnI GGCC 8 cut(s) 108, 137, 180, 257, 291, 311, 631, 1038
BsoBI CYCGRG 1 cut(s) 633
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 210, 547
Bsp143I GATC 5 cut(s) 584, 639, 750, 768, 808
Bsp19I CCATGG 1 cut(s) 53
BspANI GGCC 8 cut(s) 108, 137, 180, 257, 291, 311, 631, 1038
BspCNI CTCAG 3 cut(s) 58, 585, 846
BspDI ATCGAT 1 cut(s) 753
BspFNI CGCG 2 cut(s) 131, 308
BspLI GGNNCC 6 cut(s) 11, 75, 414, 632, 762, 1027
BspPI GGATC 2 cut(s) 579, 803
BspT104I TTCGAA 1 cut(s) 608
BspT107I GGYRCC 3 cut(s) 9, 73, 1025
BsrI ACTGG 3 cut(s) 257, 680, 1115
BssECI CCNNGG 5 cut(s) 53, 632, 633, 1029, 1042
BssMI GATC 5 cut(s) 584, 639, 750, 768, 808
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 2 cut(s) 546, 993
BssT1I CCWWGG 2 cut(s) 53, 1029
Bst2BI CACGAG 2 cut(s) 546, 993
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 6 cut(s) 147, 262, 667, 713, 725, 931
Bst6I CTCTTC 2 cut(s) 596, 993
BstACI GRCGYC 1 cut(s) 74
BstBAI YACGTR 2 cut(s) 697, 982
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 293, 949
BstDEI CTNAG 3 cut(s) 66, 593, 854
BstDSI CCRYGG 1 cut(s) 53
BstEII GGTNACC 2 cut(s) 1103, 1118
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 4 cut(s) 248, 451, 1039, 1120
BstFNI CGCG 2 cut(s) 131, 308
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 5 cut(s) 587, 642, 753, 771, 811
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 5 cut(s) 584, 639, 750, 768, 808
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 6 cut(s) 49, 82, 114, 172, 228, 341
BstNI CCWGG 1 cut(s) 1044
BstPI GGTNACC 2 cut(s) 1103, 1118
BstSCI CCNGG 4 cut(s) 632, 633, 762, 1042
BstSFI CTRYAG 1 cut(s) 532
BstUI CGCG 2 cut(s) 131, 308
BstV1I GCAGC 5 cut(s) 153, 233, 282, 931, 938
BstV2I GAAGAC 2 cut(s) 115, 678
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 2 cut(s) 54, 1115
BstYI RGATCY 1 cut(s) 584
BstZI CGGCCG 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 753
BsuRI GGCC 8 cut(s) 108, 137, 180, 257, 291, 311, 631, 1038
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 289
BtsCI GGATG 4 cut(s) 248, 451, 1039, 1120
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 223, 1108
Cac8I GCNNGC 2 cut(s) 293, 949
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 6 cut(s) 255, 290, 412, 630, 760, 896
Cfr9I CCCGGG 1 cut(s) 633
ClaI ATCGAT 1 cut(s) 753
Csp6I GTAC 4 cut(s) 97, 659, 872, 1026
CviAII CATG 5 cut(s) 6, 54, 211, 514, 716
CviQI GTAC 4 cut(s) 97, 659, 872, 1026
DdeI CTNAG 3 cut(s) 66, 593, 854
DinI GGCGCC 1 cut(s) 75
DpnI GATC 5 cut(s) 586, 641, 752, 770, 810
DpnII GATC 5 cut(s) 584, 639, 750, 768, 808
EaeI YGGCCR 2 cut(s) 309, 1036
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 2 cut(s) 596, 993
EarI CTCTTC 2 cut(s) 596, 993
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 53, 1029
Eco147I AGGCCT 2 cut(s) 108, 180
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 3 cut(s) 412, 760, 896
Eco52I CGGCCG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 633
Eco91I GGTNACC 2 cut(s) 1103, 1118
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoO109I RGGNCCY 3 cut(s) 412, 630, 760
EcoO65I GGTNACC 2 cut(s) 1103, 1118
EcoRI GAATTC 2 cut(s) 284, 610
EcoRII CCWGG 1 cut(s) 1042
EcoT14I CCWWGG 2 cut(s) 53, 1029
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 53, 1029
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 5 cut(s) 9, 57, 214, 517, 719
FaqI GGGAC 3 cut(s) 45, 420, 1116
FatI CATG 5 cut(s) 5, 53, 210, 513, 715
FauI CCCGC 1 cut(s) 300
FokI GGATG 4 cut(s) 255, 438, 1046, 1127
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 2 cut(s) 104, 627
GlaI GCGC 1 cut(s) 75
GsaI CCCAGC 2 cut(s) 371, 748
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 8 cut(s) 108, 137, 180, 257, 291, 311, 631, 1038
HapII CCGG 2 cut(s) 634, 764
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 5 cut(s) 9, 57, 214, 517, 719
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 8 cut(s) 19, 62, 188, 215, 274, 736, 836, 964
HpaII CCGG 2 cut(s) 634, 764
HphI GGTGA 2 cut(s) 1115, 1130
Hpy188I TCNGA 6 cut(s) 67, 589, 692, 841, 927, 1050
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 6 cut(s) 147, 262, 667, 713, 725, 931
HpyCH4IV ACGT 3 cut(s) 696, 981, 1147
HpyCH4V TGCA 5 cut(s) 467, 619, 818, 905, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 82, 114, 172, 228, 341
HpyF3I CTNAG 3 cut(s) 66, 593, 854
HpySE526I ACGT 3 cut(s) 696, 981, 1147
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 5 cut(s) 9, 57, 214, 517, 719
HspAI GCGC 1 cut(s) 74
KasI GGCGCC 1 cut(s) 73
KpnI GGTACC 1 cut(s) 1029
Kzo9I GATC 5 cut(s) 584, 639, 750, 768, 808
LmnI GCTCC 2 cut(s) 542, 858
Lsp1109I GCAGC 5 cut(s) 153, 233, 282, 931, 938
LweI GCATC 1 cut(s) 233
MaeI CTAG 2 cut(s) 104, 627
MaeII ACGT 3 cut(s) 696, 981, 1147
MaeIII GTNAC 6 cut(s) 425, 707, 719, 982, 1103, 1118
MalI GATC 5 cut(s) 586, 641, 752, 770, 810
MboI GATC 5 cut(s) 584, 639, 750, 768, 808
MboII GAAGA 7 cut(s) 115, 452, 575, 613, 683, 842, 980
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 210, 547
MlsI TGGCCA 1 cut(s) 1038
MluCI AATT 6 cut(s) 268, 284, 578, 610, 686, 1087
MluNI TGGCCA 1 cut(s) 1038
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 612, 764
Mox20I TGGCCA 1 cut(s) 1038
MscI TGGCCA 1 cut(s) 1038
MseI TTAA 3 cut(s) 155, 581, 1086
MslI CAYNNNNRTG 1 cut(s) 1113
Msp20I TGGCCA 1 cut(s) 1038
MspA1I CMGCKG 2 cut(s) 166, 295
MspI CCGG 2 cut(s) 634, 764
MspR9I CCNGG 4 cut(s) 634, 635, 764, 1044
MvaI CCWGG 1 cut(s) 1044
MvnI CGCG 2 cut(s) 131, 308
MwoI GCNNNNNNNGC 6 cut(s) 49, 82, 114, 172, 228, 341
NarI GGCGCC 1 cut(s) 74
NciI CCSGG 3 cut(s) 634, 635, 764
NcoI CCATGG 1 cut(s) 53
NdeII GATC 5 cut(s) 584, 639, 750, 768, 808
NlaIII CATG 5 cut(s) 9, 57, 214, 517, 719
NlaIV GGNNCC 6 cut(s) 11, 75, 414, 632, 762, 1027
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 3 cut(s) 719, 1103, 1118
NspV TTCGAA 1 cut(s) 608
PceI AGGCCT 2 cut(s) 108, 180
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 729
PfeI GAWTC 7 cut(s) 19, 62, 188, 274, 736, 836, 964
PleI GAGTC 1 cut(s) 223
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 223
Ppu21I YACGTR 2 cut(s) 697, 982
PpuMI RGGWCCY 2 cut(s) 412, 760
Psp5II RGGWCCY 2 cut(s) 412, 760
Psp6I CCWGG 1 cut(s) 1042
PspEI GGTNACC 2 cut(s) 1103, 1118
PspFI CCCAGC 2 cut(s) 367, 744
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 6 cut(s) 11, 75, 414, 632, 762, 1027
PspPI GGNCC 6 cut(s) 255, 290, 412, 630, 760, 896
PspPPI RGGWCCY 2 cut(s) 412, 760
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 584
RsaI GTAC 4 cut(s) 98, 660, 873, 1027
RsaNI GTAC 4 cut(s) 97, 659, 872, 1026
RseI CAYNNNNRTG 1 cut(s) 1113
SaqAI TTAA 3 cut(s) 155, 581, 1086
Sau3AI GATC 5 cut(s) 584, 639, 750, 768, 808
Sau96I GGNCC 6 cut(s) 255, 290, 412, 630, 760, 896
ScaI AGTACT 2 cut(s) 98, 660
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 4 cut(s) 634, 635, 764, 1044
SduI GDGCHC 2 cut(s) 210, 547
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 532
SfoI GGCGCC 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 3 cut(s) 412, 760, 896
SmaI CCCGGG 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 1113
Sse9I AATT 6 cut(s) 268, 284, 578, 610, 686, 1087
SseBI AGGCCT 2 cut(s) 108, 180
SspDI GGCGCC 1 cut(s) 73
SspI AATATT 3 cut(s) 81, 646, 775
SspMI CTAG 2 cut(s) 104, 627
StuI AGGCCT 2 cut(s) 108, 180
StyD4I CCNGG 4 cut(s) 632, 633, 762, 1042
StyI CCWWGG 2 cut(s) 53, 1029
TaaI ACNGT 6 cut(s) 147, 262, 667, 713, 725, 931
TaiI ACGT 3 cut(s) 699, 984, 1150
TaqI TCGA 6 cut(s) 17, 149, 234, 277, 608, 753
TasI AATT 6 cut(s) 268, 284, 578, 610, 686, 1087
TatI WGTACW 2 cut(s) 96, 658
TauI GCSGC 5 cut(s) 172, 175, 231, 311, 344
TfiI GAWTC 7 cut(s) 19, 62, 188, 274, 736, 836, 964
Tru1I TTAA 3 cut(s) 155, 581, 1086
Tru9I TTAA 3 cut(s) 155, 581, 1086
TscAI CASTG 2 cut(s) 230, 1115
TseFI GTSAC 3 cut(s) 719, 1103, 1118
TseI GCWGC 5 cut(s) 166, 246, 295, 944, 951
Tsp45I GTSAC 3 cut(s) 719, 1103, 1118
TspDTI ATGAA 4 cut(s) 849, 882, 956, 1143
TspGWI ACGGA 2 cut(s) 14, 909
TspMI CCCGGG 1 cut(s) 633
TspRI CASTG 2 cut(s) 230, 1115
VpaK11BI GGWCC 3 cut(s) 412, 760, 896
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 3 cut(s) 284, 610, 686
XmaI CCCGGG 1 cut(s) 633
XspI CTAG 2 cut(s) 104, 627
ZrmI AGTACT 2 cut(s) 98, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.