Rh7AG337100

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008120
Physical Location & Seq
Forward (+)
39315113 .. 39317175
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG337100.1

Sequence Viewer

Length: 441 bp
ATGAACCGCCAGCCAACACAAGTCGAAGAGAAACCCAAATCCGATCTGGGATTCAGATCAGGATCCGACGGCCAGCGAAAGAAGCGGCGTCGAGCTGTAGATGTGGCAATCACTACACACGGCACTCCATGGTGTCCGTATAAGGAATTCGTCCCACATGATGCATCTCTTCCTCCTGGCATTCAAAGAGTTTGCAGGTGTTGCGGTAAGAGGGATGGCCACCCTGGTGAGGATTGGGAAGCCTGTGCTATTCTCAAGAGGTGTACAGATTGTGGTACCTTAGGTGAGCACTGGAATGGGGACTCAGACTGTCCGACCAAGACTGGTAAGCCCCGGTGCACCGAAGAGACCGAAGAGACCGAAGAGACCGAAGAGGAAAAGCCAGATAGCTATAAACAAACTGGTCGGATCTTTCTGTTTCTTGACGAGGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.57

Weight (kDa)

5.2

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AciI CCGC 3 cut(s) 7, 85, 204
AclWI GGATC 3 cut(s) 57, 70, 416
AcoI YGGCCR 2 cut(s) 70, 217
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 2 cut(s) 265, 277
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 2 cut(s) 175, 223
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 2 cut(s) 95, 390
AluI AGCT 2 cut(s) 95, 390
Alw21I GWGCWC 2 cut(s) 291, 341
Alw26I GTCTC 3 cut(s) 341, 350, 359
Alw44I GTGCAC 1 cut(s) 337
AlwI GGATC 3 cut(s) 57, 70, 416
AoxI GGCC 2 cut(s) 70, 217
ApaLI GTGCAC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 146
Asp718I GGTACC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 239, 296
AxyI CCTNAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 219
BamHI GGATCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 291, 341
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 85, 136
BciT130I CCWGG 2 cut(s) 177, 225
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 341, 350, 359
BfaI CTAG 1 cut(s) 439
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 186
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 3 cut(s) 177, 225, 334
BmiI GGNNCC 2 cut(s) 64, 277
BmrFI CCNGG 3 cut(s) 177, 225, 334
BmsI GCATC 2 cut(s) 151, 173
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 334
BsaBI GATNNNNATC 2 cut(s) 55, 61
BsaHI GRCGYC 1 cut(s) 88
BsaI GGTCTC 3 cut(s) 341, 350, 359
BsaJI CCNNGG 3 cut(s) 128, 223, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 296, 328, 406
Bse21I CCTNAGG 1 cut(s) 280
Bse8I GATNNNNATC 2 cut(s) 55, 61
BseBI CCWGG 2 cut(s) 177, 225
BseDI CCNNGG 3 cut(s) 128, 223, 332
BseGI GGATG 2 cut(s) 220, 436
BseJI GATNNNNATC 2 cut(s) 55, 61
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 3 cut(s) 296, 328, 406
BseSI GKGCMC 1 cut(s) 341
BshFI GGCC 2 cut(s) 72, 219
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 291, 341
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 2 cut(s) 137, 314
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 341, 350, 359
BsmFI GGGAC 2 cut(s) 137, 314
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 2 cut(s) 72, 219
Bso31I GGTCTC 3 cut(s) 341, 350, 359
Bsp1286I GDGCHC 2 cut(s) 291, 341
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 4 cut(s) 43, 56, 62, 408
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 3 cut(s) 7, 85, 204
BspANI GGCC 2 cut(s) 72, 219
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 64, 277
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 3 cut(s) 57, 70, 416
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 3 cut(s) 341, 350, 359
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 3 cut(s) 296, 328, 406
BssECI CCNNGG 3 cut(s) 128, 223, 332
BssMI GATC 4 cut(s) 43, 56, 62, 408
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 177, 225
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 6 cut(s) 21, 174, 339, 348, 357, 366
BstACI GRCGYC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 11, 74
BstDEI CTNAG 2 cut(s) 280, 304
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 220, 436
BstKTI GATC 4 cut(s) 46, 59, 65, 411
BstMAI GTCTC 3 cut(s) 341, 350, 359
BstMBI GATC 4 cut(s) 43, 56, 62, 408
BstMWI GCNNNNNNNGC 2 cut(s) 82, 201
BstNI CCWGG 2 cut(s) 177, 225
BstSCI CCNGG 3 cut(s) 175, 223, 332
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 62, 408
BstYI RGATCY 2 cut(s) 62, 408
Bsu36I CCTNAGG 1 cut(s) 280
BsuRI GGCC 2 cut(s) 72, 219
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 220, 436
BtsIMutI CAGTG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 11, 74
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 264, 276
CviAII CATG 2 cut(s) 129, 158
CviJI RGCY 8 cut(s) 13, 72, 95, 219, 242, 331, 382, 390
CviKI_1 RGCY 8 cut(s) 13, 72, 95, 219, 242, 331, 382, 390
CviQI GTAC 2 cut(s) 264, 276
DdeI CTNAG 2 cut(s) 280, 304
DpnI GATC 4 cut(s) 45, 58, 64, 410
DpnII GATC 4 cut(s) 43, 56, 62, 408
EaeI YGGCCR 2 cut(s) 70, 217
Eam1104I CTCTTC 6 cut(s) 21, 174, 339, 348, 357, 366
EarI CTCTTC 6 cut(s) 21, 174, 339, 348, 357, 366
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 3 cut(s) 341, 350, 359
Eco81I CCTNAGG 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 175, 223
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 132, 161
FaiI YATR 4 cut(s) 130, 141, 159, 393
FaqI GGGAC 2 cut(s) 137, 314
FatI CATG 2 cut(s) 128, 157
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 439
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 72, 219
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 2 cut(s) 132, 161
HinfI GANTC 2 cut(s) 51, 302
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 239, 296
Hpy166II GTNNAC 2 cut(s) 264, 339
Hpy188I TCNGA 6 cut(s) 43, 56, 67, 307, 315, 408
Hpy188III TCNNGA 3 cut(s) 60, 256, 422
Hpy8I GTNNAC 2 cut(s) 264, 339
Hpy99I CGWCG 2 cut(s) 71, 93
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 164, 195, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 201
HpyF3I CTNAG 2 cut(s) 280, 304
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 2 cut(s) 132, 161
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 43, 56, 62, 408
LweI GCATC 2 cut(s) 151, 173
MaeI CTAG 1 cut(s) 439
MalI GATC 4 cut(s) 45, 58, 64, 410
MboI GATC 4 cut(s) 43, 56, 62, 408
MboII GAAGA 6 cut(s) 38, 161, 356, 365, 374, 383
MflI RGATCY 2 cut(s) 62, 408
MhlI GDGCHC 2 cut(s) 291, 341
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 3 cut(s) 90, 338, 386
MnlI CCTC 7 cut(s) 183, 204, 223, 252, 367, 421, 427
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 166
MscI TGGCCA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 225, 294
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 3 cut(s) 177, 225, 334
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 2 cut(s) 177, 225
MwoI GCNNNNNNNGC 2 cut(s) 82, 201
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 128
NdeII GATC 4 cut(s) 43, 56, 62, 408
NlaIII CATG 2 cut(s) 132, 161
NlaIV GGNNCC 2 cut(s) 64, 277
NsiI ATGCAT 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 225
PaqCI CACCTGC 1 cut(s) 186
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 175, 223
PspGI CCWGG 2 cut(s) 175, 223
PspN4I GGNNCC 2 cut(s) 64, 277
PsuI RGATCY 2 cut(s) 62, 408
RsaI GTAC 2 cut(s) 265, 277
RsaNI GTAC 2 cut(s) 264, 276
RseI CAYNNNNRTG 2 cut(s) 225, 294
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 4 cut(s) 43, 56, 62, 408
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 3 cut(s) 177, 225, 334
SduI GDGCHC 2 cut(s) 291, 341
SetI ASST 6 cut(s) 97, 200, 263, 281, 286, 392
SfaNI GCATC 2 cut(s) 151, 173
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 225, 294
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 7, 85, 204
SspMI CTAG 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 175, 223, 332
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 24, 91
TaqII GACCGA 3 cut(s) 365, 374, 383
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 51
TscAI CASTG 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 337
XapI RAATTY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.