RLG00000030953

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008120
Physical Location & Seq
Reverse (-)
877047 .. 878068
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030953

Sequence Viewer

Length: 528 bp
ATGTCTCTTTCACCAGACAAAGCCATGACGCCAACACAAGTCGCGGAGAAACCCGTTTCATATCAGGAATCGAGATCGAGATCGAGATCGAGAGCCGGATCGTGGCTGGGCCAGAATCCGATCCGCTCGTTCGTGAGTGACCCCAAACGAGCTCGTTTGGATGATGGCTTCTTTATTAAAATCCCGCCTCACCTGCTAGCAGATTTAGGTGATGATGACTCGACTGACAGTGAAGCAGAGGAAGAGGAAGAAGAAAAAGAAGGTCACGGTCGTCTTGACAGCTGTCTGATTTGTGGTCGGATTGTTAGACATCACACTGCTCACTGCCCTTACTTGAGACTTGTCCCACACAATGCAACTCTTCCTCCTGGCGTTCAAAGACTTTGCAAGTGTTGCGGTTTGAGGGATGGCCACCCTGGTAGAACAGACTGGAAAGGATTTGTTGTTATGAAGCAGTGTGACAATTGTGGTTCCTATTTAGAGCACTGGACCGATATATGCCCAAACAAGGATCGTAATGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

6.23

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 44, 124, 185, 396
AclWI GGATC 3 cut(s) 106, 115, 519
AcoI YGGCCR 1 cut(s) 409
AcyI GRCGYC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 102, 508
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 2 cut(s) 367, 415
AluBI AGCT 2 cut(s) 152, 282
AluI AGCT 2 cut(s) 152, 282
Alw21I GWGCWC 2 cut(s) 154, 486
Alw26I GTCTC 2 cut(s) 9, 331
AlwI GGATC 3 cut(s) 106, 115, 519
AoxI GGCC 2 cut(s) 109, 409
AspS9I GGNCC 2 cut(s) 109, 489
AsuHPI GGTGA 3 cut(s) 3, 182, 221
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 154, 486
BccI CCATC 2 cut(s) 158, 401
BciT130I CCWGG 2 cut(s) 369, 417
BcoDI GTCTC 2 cut(s) 9, 331
BfaI CTAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 369, 417
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 109, 489
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 2 cut(s) 369, 417
BmtI GCTAGC 1 cut(s) 200
BoxI GACNNNNGTC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 355
BsaBI GATNNNNATC 2 cut(s) 79, 85
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 508
Bse1I ACTGG 3 cut(s) 434, 491, 523
Bse8I GATNNNNATC 2 cut(s) 79, 85
BseBI CCWGG 2 cut(s) 369, 417
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 166, 412
BseJI GATNNNNATC 2 cut(s) 79, 85
BseLI CCNNNNNNNGG 2 cut(s) 102, 508
BseNI ACTGG 3 cut(s) 434, 491, 523
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 111, 411
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 154, 486
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 102, 508
BsmAI GTCTC 2 cut(s) 9, 331
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 2 cut(s) 111, 411
Bsp1286I GDGCHC 2 cut(s) 154, 486
Bsp143I GATC 6 cut(s) 74, 80, 86, 98, 120, 511
BspACI CCGC 4 cut(s) 44, 124, 185, 396
BspANI GGCC 2 cut(s) 111, 411
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 201
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 3 cut(s) 106, 115, 519
BsrBI CCGCTC 1 cut(s) 126
BsrI ACTGG 3 cut(s) 434, 491, 523
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 6 cut(s) 74, 80, 86, 98, 120, 511
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 369, 417
Bst4CI ACNGT 2 cut(s) 230, 269
Bst6I CTCTTC 2 cut(s) 237, 366
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 2 cut(s) 166, 412
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 6 cut(s) 77, 83, 89, 101, 123, 514
BstMAI GTCTC 2 cut(s) 9, 331
BstMBI GATC 6 cut(s) 74, 80, 86, 98, 120, 511
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 193, 393
BstNI CCWGG 2 cut(s) 369, 417
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 367, 415
BstUI CGCG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 111, 411
BtsCI GGATG 2 cut(s) 166, 412
BtsI GCAGTG 3 cut(s) 315, 322, 461
BtsIMutI CAGTG 5 cut(s) 235, 315, 322, 461, 484
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 109, 489
CseI GACGC 1 cut(s) 37
CviAII CATG 1 cut(s) 25
CviJI RGCY 8 cut(s) 23, 95, 106, 111, 152, 168, 282, 411
CviKI_1 RGCY 8 cut(s) 23, 95, 106, 111, 152, 168, 282, 411
DpnI GATC 6 cut(s) 76, 82, 88, 100, 122, 513
DpnII GATC 6 cut(s) 74, 80, 86, 98, 120, 511
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 237, 366
EarI CTCTTC 2 cut(s) 237, 366
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 367, 415
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 61, 449, 497, 499
FaqI GGGAC 1 cut(s) 329
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 192
FokI GGATG 2 cut(s) 173, 419
FriOI GRGCYC 1 cut(s) 154
FspBI CTAG 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 111, 411
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 28
HinfI GANTC 3 cut(s) 68, 115, 218
HpaII CCGG 1 cut(s) 96
HphI GGTGA 3 cut(s) 3, 182, 221
Hpy188I TCNGA 3 cut(s) 120, 288, 300
Hpy188III TCNNGA 7 cut(s) 65, 72, 78, 84, 90, 133, 275
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 2 cut(s) 230, 269
HpyCH4V TGCA 2 cut(s) 356, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 393
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 6 cut(s) 74, 80, 86, 98, 120, 511
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 137, 263, 458
MalI GATC 6 cut(s) 76, 82, 88, 100, 122, 513
MbiI CCGCTC 1 cut(s) 126
MboI GATC 6 cut(s) 74, 80, 86, 98, 120, 511
MboII GAAGA 4 cut(s) 254, 260, 263, 353
MfeI CAATTG 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 154, 486
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 1 cut(s) 463
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 5 cut(s) 198, 232, 238, 375, 396
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 369, 417
MunI CAATTG 1 cut(s) 463
MvaI CCWGG 2 cut(s) 369, 417
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 193, 393
NdeII GATC 6 cut(s) 74, 80, 86, 98, 120, 511
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 472
NmuCI GTSAC 3 cut(s) 137, 263, 458
PaqCI CACCTGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 68, 115
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 367, 415
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 367, 415
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 2 cut(s) 109, 489
PvuII CAGCTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 6 cut(s) 74, 80, 86, 98, 120, 511
Sau96I GGNCC 2 cut(s) 109, 489
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 369, 417
SduI GDGCHC 2 cut(s) 154, 486
SetI ASST 5 cut(s) 154, 195, 211, 265, 284
SinI GGWCC 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 1 cut(s) 463
SsiI CCGC 4 cut(s) 44, 124, 185, 396
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 367, 415
TaaI ACNGT 2 cut(s) 230, 269
TaqI TCGA 5 cut(s) 71, 77, 83, 89, 221
TaqII GACCGA 1 cut(s) 506
TasI AATT 1 cut(s) 463
TfiI GAWTC 2 cut(s) 68, 115
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 5 cut(s) 235, 322, 329, 461, 491
TseFI GTSAC 3 cut(s) 137, 263, 458
Tsp45I GTSAC 3 cut(s) 137, 263, 458
TspDTI ATGAA 2 cut(s) 48, 464
TspRI CASTG 5 cut(s) 235, 322, 329, 461, 491
VpaK11BI GGWCC 1 cut(s) 489
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.