Rh5BG367800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008120
Physical Location & Seq
Forward (+)
57660386 .. 57664556
4171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG367800.1

Sequence Viewer

Length: 681 bp
ATGCCCACGCAGATTAGCTACAGCAGGGGGGCACGAGAAGTCAAGGTGGAAGAAGTCGTTTTGAAATTAAGATCCGACCTGAGCCAGAAGAGGTCGAATTCCCTGCAAATCTCTAGGCCCCGGGAGATCAATATTCAAGGAGGAGTACTGACGGTGGAAGACTGGCACGAGAAATTCAGATACGTGAAATCAGGTTACGGTCATGGTCACGGTCAGGGCGAGAATCCAACCCAGCAGATCGATAAGGACCCGGACGAGAATCCAACCCAGCAGATCGATAAGGACCCGGAGATCAATATTGAAGCTGGTGGTAGTGGTAAAAGTACAGATGATCCTCCTGCAAGGAGTTGGGAAGATGAATCAGATGATGATATGCTAAGGAGCATATATGAAGTACCATTTGTTGATGAGTTTGACGGACCTCTTGCAAGATGTGAGCTTTGTGGTCAGACCGTATCTCACTATGCTGCAAGCTGCCCCTACTTGATTCATTTGCCACACCACGTAACTCTTCCTCGTGGCTATGACAGAGCTTGTAAGTGCTGTGGTACCAAGGATGGCCACCCTGGTCGGAAGTGGGAGGGATTTGCTGTCCGCAAGTATTGTTTTAATTGTTATCGGGGAGGTCACCACTGGGATGGTGACCCAGAATGTCCCAAGAAAAAGCAACGTATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.63

Weight (kDa)

6.06

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AciI CCGC 1 cut(s) 595
AclWI GGATC 2 cut(s) 66, 326
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 2 cut(s) 97, 173
AfaI GTAC 4 cut(s) 147, 325, 396, 550
AgsI TTSAA 3 cut(s) 64, 137, 302
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 5 cut(s) 18, 305, 439, 474, 533
AluI AGCT 5 cut(s) 18, 305, 439, 474, 533
AlwI GGATC 2 cut(s) 66, 326
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 116, 559
ApeKI GCWGC 2 cut(s) 467, 474
ApoI RAATTY 2 cut(s) 97, 173
Asp718I GGTACC 1 cut(s) 548
AspS9I GGNCC 4 cut(s) 117, 247, 283, 419
AsuC2I CCSGG 4 cut(s) 121, 122, 251, 287
AsuHPI GGTGA 2 cut(s) 620, 653
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 247, 283, 419
BaeGI GKGCMC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 561
BanI GGYRCC 1 cut(s) 548
BauI CACGAG 3 cut(s) 33, 167, 516
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 454, 461
BccI CCATC 2 cut(s) 551, 632
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 567
BcnI CCSGG 4 cut(s) 121, 122, 251, 287
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 2 cut(s) 468, 475
BlsI GCNGC 2 cut(s) 469, 476
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 5 cut(s) 121, 122, 251, 287, 567
Bme18I GGWCC 3 cut(s) 247, 283, 419
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 117, 247, 283, 419
BmiI GGNNCC 4 cut(s) 119, 249, 285, 550
BmrFI CCNGG 5 cut(s) 121, 122, 251, 287, 567
BmrI ACTGGG 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 165
Bpu10I CCTNAGC 2 cut(s) 80, 377
BpuMI CCSGG 4 cut(s) 121, 122, 251, 287
Bsa29I ATCGAT 2 cut(s) 240, 276
BsaAI YACGTR 2 cut(s) 184, 505
BsaJI CCNNGG 4 cut(s) 119, 120, 552, 565
Bse1I ACTGG 2 cut(s) 167, 638
BseBI CCWGG 1 cut(s) 567
BseCI ATCGAT 2 cut(s) 240, 276
BseDI CCNNGG 4 cut(s) 119, 120, 552, 565
BseGI GGATG 2 cut(s) 562, 643
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 167, 638
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 2 cut(s) 454, 461
BseYI CCCAGC 2 cut(s) 231, 267
BshFI GGCC 2 cut(s) 118, 561
BshNI GGYRCC 1 cut(s) 548
BshVI ATCGAT 2 cut(s) 240, 276
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 121, 251, 287
BslFI GGGAC 1 cut(s) 639
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 2 cut(s) 118, 561
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 6 cut(s) 71, 126, 237, 273, 291, 331
BspACI CCGC 1 cut(s) 595
BspANI GGCC 2 cut(s) 118, 561
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 2 cut(s) 240, 276
BspLI GGNNCC 4 cut(s) 119, 249, 285, 550
BspPI GGATC 2 cut(s) 66, 326
BspT107I GGYRCC 1 cut(s) 548
BsrI ACTGG 2 cut(s) 167, 638
BssECI CCNNGG 4 cut(s) 119, 120, 552, 565
BssMI GATC 6 cut(s) 71, 126, 237, 273, 291, 331
BssSI CACGAG 3 cut(s) 33, 167, 516
BssT1I CCWWGG 1 cut(s) 552
Bst2BI CACGAG 3 cut(s) 33, 167, 516
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 154, 200, 212, 454
Bst6I CTCTTC 2 cut(s) 83, 516
BstBAI YACGTR 2 cut(s) 184, 505
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 80, 377
BstEII GGTNACC 2 cut(s) 626, 641
BstF5I GGATG 2 cut(s) 562, 643
BstKTI GATC 6 cut(s) 74, 129, 240, 276, 294, 334
BstMBI GATC 6 cut(s) 71, 126, 237, 273, 291, 331
BstNI CCWGG 1 cut(s) 567
BstPI GGTNACC 2 cut(s) 626, 641
BstSCI CCNGG 5 cut(s) 119, 120, 249, 285, 565
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 454, 461
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 638
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 2 cut(s) 240, 276
BsuRI GGCC 2 cut(s) 118, 561
BsuTUI ATCGAT 2 cut(s) 240, 276
BtsCI GGATG 2 cut(s) 562, 643
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 472
Cfr13I GGNCC 4 cut(s) 117, 247, 283, 419
Cfr9I CCCGGG 1 cut(s) 120
ClaI ATCGAT 2 cut(s) 240, 276
Csp6I GTAC 4 cut(s) 146, 324, 395, 549
CviAII CATG 1 cut(s) 203
CviJI RGCY 9 cut(s) 18, 84, 118, 305, 439, 474, 522, 533, 561
CviKI_1 RGCY 9 cut(s) 18, 84, 118, 305, 439, 474, 522, 533, 561
CviQI GTAC 4 cut(s) 146, 324, 395, 549
DdeI CTNAG 2 cut(s) 80, 377
DpnI GATC 6 cut(s) 73, 128, 239, 275, 293, 333
DpnII GATC 6 cut(s) 71, 126, 237, 273, 291, 331
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 83, 516
EarI CTCTTC 2 cut(s) 83, 516
Eco130I CCWWGG 1 cut(s) 552
Eco47I GGWCC 3 cut(s) 247, 283, 419
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 2 cut(s) 626, 641
EcoO109I RGGNCCY 3 cut(s) 117, 247, 283
EcoO65I GGTNACC 2 cut(s) 626, 641
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 204, 374, 386, 388, 390, 465, 525, 679
FaqI GGGAC 1 cut(s) 639
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 468, 475
FokI GGATG 2 cut(s) 569, 650
Fsp4HI GCNGC 2 cut(s) 468, 475
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 468, 475
GsaI CCCAGC 2 cut(s) 235, 271
HaeIII GGCC 2 cut(s) 118, 561
HapII CCGG 3 cut(s) 121, 251, 287
Hin1II CATG 1 cut(s) 206
HinfI GANTC 4 cut(s) 223, 259, 359, 487
HpaII CCGG 3 cut(s) 121, 251, 287
HphI GGTGA 2 cut(s) 620, 653
Hpy188I TCNGA 5 cut(s) 76, 179, 364, 450, 573
HpyCH4III ACNGT 4 cut(s) 154, 200, 212, 454
HpyCH4IV ACGT 3 cut(s) 183, 504, 670
HpyCH4V TGCA 4 cut(s) 106, 341, 428, 470
HpyF3I CTNAG 2 cut(s) 80, 377
HpySE526I ACGT 3 cut(s) 183, 504, 670
Hsp92II CATG 1 cut(s) 206
KpnI GGTACC 1 cut(s) 552
Kzo9I GATC 6 cut(s) 71, 126, 237, 273, 291, 331
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 2 cut(s) 454, 461
MaeI CTAG 1 cut(s) 114
MaeII ACGT 3 cut(s) 183, 504, 670
MaeIII GTNAC 5 cut(s) 194, 206, 505, 626, 641
MalI GATC 6 cut(s) 73, 128, 239, 275, 293, 333
MboI GATC 6 cut(s) 71, 126, 237, 273, 291, 331
MboII GAAGA 5 cut(s) 62, 100, 170, 365, 503
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 4 cut(s) 65, 97, 173, 610
MluNI TGGCCA 1 cut(s) 561
MmeI TCCRAC 4 cut(s) 99, 251, 287, 551
MnlI CCTC 7 cut(s) 84, 134, 345, 432, 525, 574, 617
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
MseI TTAA 2 cut(s) 68, 609
MslI CAYNNNNRTG 1 cut(s) 636
Msp20I TGGCCA 1 cut(s) 561
MspI CCGG 3 cut(s) 121, 251, 287
MspR9I CCNGG 5 cut(s) 121, 122, 251, 287, 567
MvaI CCWGG 1 cut(s) 567
NciI CCSGG 4 cut(s) 121, 122, 251, 287
NdeII GATC 6 cut(s) 71, 126, 237, 273, 291, 331
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 4 cut(s) 119, 249, 285, 550
NmuCI GTSAC 3 cut(s) 206, 626, 641
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 4 cut(s) 223, 259, 359, 487
PkrI GCNGC 2 cut(s) 469, 476
Ppu21I YACGTR 2 cut(s) 184, 505
PpuMI RGGWCCY 2 cut(s) 247, 283
Psp5II RGGWCCY 2 cut(s) 247, 283
Psp6I CCWGG 1 cut(s) 565
PspEI GGTNACC 2 cut(s) 626, 641
PspFI CCCAGC 2 cut(s) 231, 267
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 4 cut(s) 119, 249, 285, 550
PspPI GGNCC 4 cut(s) 117, 247, 283, 419
PspPPI RGGWCCY 2 cut(s) 247, 283
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 4 cut(s) 147, 325, 396, 550
RsaNI GTAC 4 cut(s) 146, 324, 395, 549
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 2 cut(s) 68, 609
SatI GCNGC 2 cut(s) 468, 475
Sau3AI GATC 6 cut(s) 71, 126, 237, 273, 291, 331
Sau96I GGNCC 4 cut(s) 117, 247, 283, 419
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 5 cut(s) 121, 122, 251, 287, 567
SduI GDGCHC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 3 cut(s) 247, 283, 419
SmaI CCCGGG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 636
Sse9I AATT 4 cut(s) 65, 97, 173, 610
SsiI CCGC 1 cut(s) 595
SspI AATATT 2 cut(s) 133, 298
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 5 cut(s) 119, 120, 249, 285, 565
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 4 cut(s) 154, 200, 212, 454
TaiI ACGT 3 cut(s) 186, 507, 673
TaqI TCGA 3 cut(s) 95, 240, 276
TasI AATT 4 cut(s) 65, 97, 173, 610
TatI WGTACW 2 cut(s) 145, 323
TfiI GAWTC 4 cut(s) 223, 259, 359, 487
Tru1I TTAA 2 cut(s) 68, 609
Tru9I TTAA 2 cut(s) 68, 609
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 3 cut(s) 206, 626, 641
TseI GCWGC 2 cut(s) 467, 474
Tsp45I GTSAC 3 cut(s) 206, 626, 641
TspDTI ATGAA 4 cut(s) 372, 405, 479, 666
TspGWI ACGGA 1 cut(s) 432
TspMI CCCGGG 1 cut(s) 120
TspRI CASTG 1 cut(s) 638
VpaK11BI GGWCC 3 cut(s) 247, 283, 419
XapI RAATTY 2 cut(s) 97, 173
XmaI CCCGGG 1 cut(s) 120
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.