RchiOBHm_Chr5g0054291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008120
Physical Location & Seq
Forward (+)
56787673 .. 56791194
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33147

Sequence Viewer

Length: 678 bp
ATGCCCACGCAGATTAGCTACAGCAGGGGGGCACGAGAAGTCAAGGTGGAAGAAGTCATTTTGAAATTAAGATCCGACCTGAGCCAGAAGAGTTCGAATTCCCTGCAAATCTCTAGGCCCCGGGAGATCAATATTCAAGGAGGAGTACTGACGGTGGAAGACTGGCAGGAGAAATTCAGATACGTGAAATCAGGTTACGGTCATGGTCACGGCGAGAATCCAACCCAGCAGATCGATAAGGACCCGGACGAGAATCCAACCCCGCAGATCAATAAGGACCCGGAGATCAATATTGAAGCTGGTGGCAGTGGTAAAAGTACAGATAATCCTCCTGCAAGGAGTTGGGAAGATGAGTCATATGATGATATGCTCCTTCACATATATGGAGTACCATTTGCTGATGACGAGTTTGACGGACCTCTTGCAAGATGTGAGCTTTGTGGTCAGACCGTATCTCACTATGCTGCAAGCTGCCCCTACTTGGTTCATTTGCCACACCACATAACTCTTCCTCGTGGTTATGACAGAGCTTGTAAGTGTTGTGGTAGAAAGGATGGCCACCCTGGTCAGAAGTGGGAGGGATTTGCTATCCGCAAGTATTGTTTTAATTGTTGTCAGGGAGCTGACCACTGGGATGGTGACCCAGAATGTCCCAATAAAAAGCAACGTGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

5.71

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 263, 592
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 2 cut(s) 97, 173
AfaI GTAC 3 cut(s) 147, 319, 390
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 3 cut(s) 64, 137, 296
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 6 cut(s) 18, 299, 436, 471, 530, 623
AluI AGCT 6 cut(s) 18, 299, 436, 471, 530, 623
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 116, 556
ApeKI GCWGC 2 cut(s) 464, 471
ApoI RAATTY 2 cut(s) 97, 173
AspS9I GGNCC 4 cut(s) 117, 241, 277, 416
AsuC2I CCSGG 4 cut(s) 121, 122, 245, 281
AsuHPI GGTGA 1 cut(s) 650
AsuII TTCGAA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 241, 277, 416
BaeGI GKGCMC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 558
BauI CACGAG 2 cut(s) 33, 513
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 451, 458
BccI CCATC 2 cut(s) 548, 629
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 4 cut(s) 121, 122, 245, 281
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 2 cut(s) 465, 472
BlsI GCNGC 2 cut(s) 466, 473
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 5 cut(s) 121, 122, 245, 281, 564
Bme18I GGWCC 3 cut(s) 241, 277, 416
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 117, 241, 277, 416
BmiI GGNNCC 3 cut(s) 119, 243, 279
BmrFI CCNGG 5 cut(s) 121, 122, 245, 281, 564
BmrI ACTGGG 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 4 cut(s) 121, 122, 245, 281
Bsa29I ATCGAT 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 119, 120, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 167, 635
BseBI CCWGG 1 cut(s) 564
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 119, 120, 562
BseGI GGATG 2 cut(s) 559, 640
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 167, 635
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 2 cut(s) 451, 458
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 118, 558
BshVI ATCGAT 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 121, 245, 281
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 2 cut(s) 118, 558
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 5 cut(s) 71, 126, 231, 267, 285
BspACI CCGC 2 cut(s) 263, 592
BspANI GGCC 2 cut(s) 118, 558
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 119, 243, 279
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 167, 635
BssECI CCNNGG 3 cut(s) 119, 120, 562
BssMI GATC 5 cut(s) 71, 126, 231, 267, 285
BssSI CACGAG 2 cut(s) 33, 513
Bst2BI CACGAG 2 cut(s) 33, 513
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 154, 200, 451
Bst6I CTCTTC 2 cut(s) 83, 513
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 2 cut(s) 559, 640
BstKTI GATC 5 cut(s) 74, 129, 234, 270, 288
BstMBI GATC 5 cut(s) 71, 126, 231, 267, 285
BstNI CCWGG 1 cut(s) 564
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 5 cut(s) 119, 120, 243, 279, 562
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 451, 458
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 2 cut(s) 118, 558
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 2 cut(s) 559, 640
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 313, 628
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 4 cut(s) 117, 241, 277, 416
Cfr9I CCCGGG 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 3 cut(s) 146, 318, 389
CviAII CATG 1 cut(s) 203
CviJI RGCY 9 cut(s) 18, 84, 118, 299, 436, 471, 530, 558, 623
CviKI_1 RGCY 9 cut(s) 18, 84, 118, 299, 436, 471, 530, 558, 623
CviQI GTAC 3 cut(s) 146, 318, 389
DdeI CTNAG 1 cut(s) 80
DpnI GATC 5 cut(s) 73, 128, 233, 269, 287
DpnII GATC 5 cut(s) 71, 126, 231, 267, 285
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 83, 513
EarI CTCTTC 2 cut(s) 83, 513
Eco47I GGWCC 3 cut(s) 241, 277, 416
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 638
EcoO109I RGGNCCY 3 cut(s) 117, 241, 277
EcoO65I GGTNACC 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 562
FaeI CATG 1 cut(s) 206
FaqI GGGAC 1 cut(s) 636
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 270
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 465, 472
FokI GGATG 2 cut(s) 566, 647
Fsp4HI GCNGC 2 cut(s) 465, 472
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 465, 472
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 118, 558
HapII CCGG 3 cut(s) 121, 245, 281
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 217, 253, 353
HpaII CCGG 3 cut(s) 121, 245, 281
HphI GGTGA 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 76, 179, 447, 570
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 154, 200, 451
HpyCH4IV ACGT 2 cut(s) 183, 667
HpyCH4V TGCA 4 cut(s) 106, 335, 425, 467
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 183, 667
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 71, 126, 231, 267, 285
LmnI GCTCC 2 cut(s) 375, 620
Lsp1109I GCAGC 2 cut(s) 451, 458
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 183, 667
MaeIII GTNAC 3 cut(s) 194, 206, 638
MalI GATC 5 cut(s) 73, 128, 233, 269, 287
MboI GATC 5 cut(s) 71, 126, 231, 267, 285
MboII GAAGA 5 cut(s) 62, 100, 170, 359, 500
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 4 cut(s) 65, 97, 173, 607
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 99, 245, 281
MnlI CCTC 5 cut(s) 134, 339, 429, 522, 571
Mox20I TGGCCA 1 cut(s) 558
MscI TGGCCA 1 cut(s) 558
MseI TTAA 2 cut(s) 68, 606
MslI CAYNNNNRTG 2 cut(s) 381, 633
Msp20I TGGCCA 1 cut(s) 558
MspI CCGG 3 cut(s) 121, 245, 281
MspR9I CCNGG 5 cut(s) 121, 122, 245, 281, 564
MvaI CCWGG 1 cut(s) 564
NciI CCSGG 4 cut(s) 121, 122, 245, 281
NdeI CATATG 1 cut(s) 358
NdeII GATC 5 cut(s) 71, 126, 231, 267, 285
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 3 cut(s) 119, 243, 279
NmuCI GTSAC 2 cut(s) 206, 638
NspV TTCGAA 1 cut(s) 95
PfeI GAWTC 2 cut(s) 217, 253
PkrI GCNGC 2 cut(s) 466, 473
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 2 cut(s) 241, 277
Psp5II RGGWCCY 2 cut(s) 241, 277
Psp6I CCWGG 1 cut(s) 562
PspEI GGTNACC 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 119, 243, 279
PspPI GGNCC 4 cut(s) 117, 241, 277, 416
PspPPI RGGWCCY 2 cut(s) 241, 277
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 3 cut(s) 147, 319, 390
RsaNI GTAC 3 cut(s) 146, 318, 389
RseI CAYNNNNRTG 2 cut(s) 381, 633
SaqAI TTAA 2 cut(s) 68, 606
SatI GCNGC 2 cut(s) 465, 472
Sau3AI GATC 5 cut(s) 71, 126, 231, 267, 285
Sau96I GGNCC 4 cut(s) 117, 241, 277, 416
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 5 cut(s) 121, 122, 245, 281, 564
SduI GDGCHC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 3 cut(s) 241, 277, 416
SmaI CCCGGG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 381, 633
Sse9I AATT 4 cut(s) 65, 97, 173, 607
SsiI CCGC 2 cut(s) 263, 592
SspI AATATT 2 cut(s) 133, 292
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 5 cut(s) 119, 120, 243, 279, 562
TaaI ACNGT 3 cut(s) 154, 200, 451
TaiI ACGT 2 cut(s) 186, 670
TaqI TCGA 2 cut(s) 95, 234
TasI AATT 4 cut(s) 65, 97, 173, 607
TatI WGTACW 2 cut(s) 145, 317
TfiI GAWTC 2 cut(s) 217, 253
Tru1I TTAA 2 cut(s) 68, 606
Tru9I TTAA 2 cut(s) 68, 606
TscAI CASTG 2 cut(s) 313, 635
TseFI GTSAC 2 cut(s) 206, 638
TseI GCWGC 2 cut(s) 464, 471
Tsp45I GTSAC 2 cut(s) 206, 638
TspDTI ATGAA 1 cut(s) 476
TspGWI ACGGA 1 cut(s) 429
TspMI CCCGGG 1 cut(s) 120
TspRI CASTG 2 cut(s) 313, 635
VpaK11BI GGWCC 3 cut(s) 241, 277, 416
XapI RAATTY 2 cut(s) 97, 173
XmaI CCCGGG 1 cut(s) 120
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.