Rw5G033630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008120
Physical Location & Seq
Forward (+)
57251469 .. 57254956
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033630.1

Sequence Viewer

Length: 684 bp
ATGCCCACGCAGATTAGCTACAGCAGGGGGGCACAAGAAGTCAAGGTGGAAGAAGTCATTTTGAAATTACGATCCGACCTGAGCCAGAAGTGTTCGAATTCCCTGCAAATCTCTAGGCCCCGGGAGATCAATATTCAAGGAGGAGTACTGACGGTGGAAGACTGGCAGGAGAAATTCAGATACGTGAAATCAGGTTACGGTCATGGTCACGGTCAGGGCGAGAATCCAACCCAGCAGATCGATAAGGAGCCGGACGAGAATCCAACCCAGCAGATCGATAAGGACCCGGAGATCAATATTGAAGCTGGTGGCAGTGGTAAAAGTACAGATAATCCTCCTGCAAGGAGTTGGGAAGATGAATCAGATGATGATATGCTCCTTCACATATATGGAGTACCATTTGCTGATGACGAGTTTGACGGACCTCTTGCAAGTTGTGAGCTTTGTGGTCAGACCGTATCTCACTATGCTGCAAGCTGCCCCTACTTGATTCATTTGCCACACCACATAACTCTTCCTCGTGGTTATGACAGAGCTTGTAAGTGTTGTGGTAGAAAGGATGGCCACCCTGGTCAGAAGTGGGAGGGATTTGCTATCCGCAAGTATTGTTTTAATTGTTGTCTGGGAGCTGACCACTGGGATGGTGACCCAGAATGTCCCAAGAAAAAGCAACGTGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.45

Weight (kDa)

5.36

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 598
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 2 cut(s) 97, 173
AfaI GTAC 3 cut(s) 147, 325, 396
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 3 cut(s) 64, 137, 302
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 6 cut(s) 18, 305, 442, 477, 536, 629
AluI AGCT 6 cut(s) 18, 305, 442, 477, 536, 629
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 116, 562
ApeKI GCWGC 2 cut(s) 470, 477
ApoI RAATTY 2 cut(s) 97, 173
AspS9I GGNCC 3 cut(s) 117, 283, 422
AsuC2I CCSGG 3 cut(s) 121, 122, 287
AsuHPI GGTGA 1 cut(s) 656
AsuII TTCGAA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 283, 422
BaeGI GKGCMC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 564
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 457, 464
BccI CCATC 2 cut(s) 554, 635
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 570
BcnI CCSGG 3 cut(s) 121, 122, 287
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 2 cut(s) 471, 478
BlsI GCNGC 2 cut(s) 472, 479
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 4 cut(s) 121, 122, 287, 570
Bme18I GGWCC 2 cut(s) 283, 422
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 117, 283, 422
BmiI GGNNCC 3 cut(s) 119, 249, 285
BmrFI CCNGG 4 cut(s) 121, 122, 287, 570
BmrI ACTGGG 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 121, 122, 287
Bsa29I ATCGAT 2 cut(s) 240, 276
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 119, 120, 568
Bse1I ACTGG 2 cut(s) 167, 641
BseBI CCWGG 1 cut(s) 570
BseCI ATCGAT 2 cut(s) 240, 276
BseDI CCNNGG 3 cut(s) 119, 120, 568
BseGI GGATG 2 cut(s) 565, 646
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 167, 641
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 2 cut(s) 457, 464
BseYI CCCAGC 2 cut(s) 231, 267
BshFI GGCC 2 cut(s) 118, 564
BshVI ATCGAT 2 cut(s) 240, 276
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 121, 251, 287
BslFI GGGAC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 2 cut(s) 118, 564
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 5 cut(s) 71, 126, 237, 273, 291
BspACI CCGC 1 cut(s) 598
BspANI GGCC 2 cut(s) 118, 564
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 2 cut(s) 240, 276
BspLI GGNNCC 3 cut(s) 119, 249, 285
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 167, 641
BssECI CCNNGG 3 cut(s) 119, 120, 568
BssMI GATC 5 cut(s) 71, 126, 237, 273, 291
BssSI CACGAG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 4 cut(s) 154, 200, 212, 457
Bst6I CTCTTC 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 2 cut(s) 565, 646
BstKTI GATC 5 cut(s) 74, 129, 240, 276, 294
BstMBI GATC 5 cut(s) 71, 126, 237, 273, 291
BstNI CCWGG 1 cut(s) 570
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 4 cut(s) 119, 120, 285, 568
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 457, 464
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 641
Bsu15I ATCGAT 2 cut(s) 240, 276
BsuRI GGCC 2 cut(s) 118, 564
BsuTUI ATCGAT 2 cut(s) 240, 276
BtsCI GGATG 2 cut(s) 565, 646
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 319, 634
Cac8I GCNNGC 1 cut(s) 475
Cfr13I GGNCC 3 cut(s) 117, 283, 422
Cfr9I CCCGGG 1 cut(s) 120
ClaI ATCGAT 2 cut(s) 240, 276
Csp6I GTAC 3 cut(s) 146, 324, 395
CviAII CATG 1 cut(s) 203
CviQI GTAC 3 cut(s) 146, 324, 395
DdeI CTNAG 1 cut(s) 80
DpnI GATC 5 cut(s) 73, 128, 239, 275, 293
DpnII GATC 5 cut(s) 71, 126, 237, 273, 291
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 283, 422
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 644
EcoO109I RGGNCCY 2 cut(s) 117, 283
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 568
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 204, 374, 386, 388, 390, 468, 509, 528
FaqI GGGAC 1 cut(s) 642
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 471, 478
FokI GGATG 2 cut(s) 572, 653
Fsp4HI GCNGC 2 cut(s) 471, 478
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 471, 478
GsaI CCCAGC 2 cut(s) 235, 271
HaeIII GGCC 2 cut(s) 118, 564
HapII CCGG 3 cut(s) 121, 251, 287
Hin1II CATG 1 cut(s) 206
HinfI GANTC 4 cut(s) 223, 259, 359, 490
HpaII CCGG 3 cut(s) 121, 251, 287
HphI GGTGA 1 cut(s) 656
Hpy188I TCNGA 5 cut(s) 76, 179, 364, 453, 576
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 4 cut(s) 154, 200, 212, 457
HpyCH4IV ACGT 2 cut(s) 183, 673
HpyCH4V TGCA 4 cut(s) 106, 341, 431, 473
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 183, 673
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 71, 126, 237, 273, 291
LmnI GCTCC 3 cut(s) 247, 381, 626
Lsp1109I GCAGC 2 cut(s) 457, 464
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 183, 673
MaeIII GTNAC 3 cut(s) 194, 206, 644
MalI GATC 5 cut(s) 73, 128, 239, 275, 293
MboI GATC 5 cut(s) 71, 126, 237, 273, 291
MboII GAAGA 4 cut(s) 62, 170, 365, 506
MhlI GDGCHC 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 4 cut(s) 65, 97, 173, 613
MluNI TGGCCA 1 cut(s) 564
MmeI TCCRAC 3 cut(s) 99, 251, 287
MnlI CCTC 5 cut(s) 134, 345, 435, 528, 577
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 387, 639
Msp20I TGGCCA 1 cut(s) 564
MspI CCGG 3 cut(s) 121, 251, 287
MspR9I CCNGG 4 cut(s) 121, 122, 287, 570
MvaI CCWGG 1 cut(s) 570
NciI CCSGG 3 cut(s) 121, 122, 287
NdeII GATC 5 cut(s) 71, 126, 237, 273, 291
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 3 cut(s) 119, 249, 285
NmuCI GTSAC 2 cut(s) 206, 644
NspV TTCGAA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 4 cut(s) 223, 259, 359, 490
PkrI GCNGC 2 cut(s) 472, 479
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 568
PspEI GGTNACC 1 cut(s) 644
PspFI CCCAGC 2 cut(s) 231, 267
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 119, 249, 285
PspPI GGNCC 3 cut(s) 117, 283, 422
PspPPI RGGWCCY 1 cut(s) 283
RsaI GTAC 3 cut(s) 147, 325, 396
RsaNI GTAC 3 cut(s) 146, 324, 395
RseI CAYNNNNRTG 2 cut(s) 387, 639
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 2 cut(s) 471, 478
Sau3AI GATC 5 cut(s) 71, 126, 237, 273, 291
Sau96I GGNCC 3 cut(s) 117, 283, 422
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 4 cut(s) 121, 122, 287, 570
SduI GDGCHC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 2 cut(s) 283, 422
SmaI CCCGGG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 387, 639
Sse9I AATT 4 cut(s) 65, 97, 173, 613
SsiI CCGC 1 cut(s) 598
SspI AATATT 2 cut(s) 133, 298
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 119, 120, 285, 568
TaaI ACNGT 4 cut(s) 154, 200, 212, 457
TaiI ACGT 2 cut(s) 186, 676
TaqI TCGA 3 cut(s) 95, 240, 276
TasI AATT 4 cut(s) 65, 97, 173, 613
TatI WGTACW 2 cut(s) 145, 323
TfiI GAWTC 4 cut(s) 223, 259, 359, 490
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 2 cut(s) 319, 641
TseFI GTSAC 2 cut(s) 206, 644
TseI GCWGC 2 cut(s) 470, 477
Tsp45I GTSAC 2 cut(s) 206, 644
TspDTI ATGAA 2 cut(s) 372, 482
TspGWI ACGGA 1 cut(s) 435
TspMI CCCGGG 1 cut(s) 120
TspRI CASTG 2 cut(s) 319, 641
VpaK11BI GGWCC 2 cut(s) 283, 422
XapI RAATTY 2 cut(s) 97, 173
XmaI CCCGGG 1 cut(s) 120
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.