Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008120

Physical Location & Seq

Genomic Coordinates Reverse (-)

1040903 .. 1041979

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGATCCTATTGCTATTTCAGAACAGGACCAAAAGACCCAAAAATTAATCGGGCTGGGCAAGGGATCGGGATCGAGATCGAGATCGAGATCCGGATCCTGGCTGGGCCAGAATCCGATACGCTCCTTTTGAGTGACCCCAAACGAGCTCGTTTGGATGATGGCTTCTTTATTAAAATCCCGCCTCACCTGCTAGCAGATTTAGGTGATGATGATTCGACTGACAGTGAAGCAGAGGAAGAAGAAAAAGAAGGTCACGGTCGTCTTGACAGCTGTCTGATTTGTGGTCGGATTGTTAGACATCACACTGCTTACTGCCCGTACTTGAGATTTGTCCCACACAATGCAACTCTTCCTCCTGGCGTTCAAAGACTTTGCAAGTGTTGCGGTTTGAGGGATGGCCACCCTGGTAGAACAGACTGGAAAGGATTTGTTGTTATGAAGCAGTGTGACAATTGTGGTTCCTATTTAGAGCACTGGACTGATGAATGCCCAAACAAGGATCGTAATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.36

Weight (kDa)

5.47

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008120)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20302
malus_domestica	MD02G1276400.v1.1 MD09G1111400.v1.1
pyrus_communis	pycom09g03610
rosa_chinensis	RchiOBHm_Chr5g0054291
rosa_laevigata	RLG00000030953 RLG00000030954 RLG00000034925
rosa_roxburghii	Rroxscaffold_1G00074660
rosa_rugosa	Rorug04G0391700 Rorug07G0196400
rosa_samantha	Rh5AG355900 Rh5BG016500 Rh5BG367000 Rh5BG367800 Rh5DG382000 Rh7AG337100 Rh7BG328000 Rh7CG355100 Rh7DG333700
rosa_wichuraiana	Rw5G001270 Rw5G033450 Rw5G033630 Rw7G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	198
Acc36I	ACCTGC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	2 cut(s)	182, 387
AclWI	GGATC	7 cut(s)	13, 74, 80, 85, 91, 104, 510
AcoI	YGGCCR	1 cut(s)	400
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	100, 499
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	99, 358, 406
AluBI	AGCT	2 cut(s)	149, 273
AluI	AGCT	2 cut(s)	149, 273
Alw21I	GWGCWC	2 cut(s)	151, 477
AlwI	GGATC	7 cut(s)	13, 74, 80, 85, 91, 104, 510
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	2 cut(s)	107, 400
AseI	ATTAAT	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	29, 107
AsuHPI	GGTGA	2 cut(s)	179, 218
AsuNHI	GCTAGC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	402
BamHI	GGATCC	2 cut(s)	5, 96
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	2 cut(s)	151, 477
BccI	CCATC	2 cut(s)	155, 392
BciT130I	CCWGG	3 cut(s)	101, 360, 408
BfaI	CTAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	101, 360, 408
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 107
BmiI	GGNNCC	3 cut(s)	7, 98, 463
BmrFI	CCNGG	3 cut(s)	101, 360, 408
BmtI	GCTAGC	1 cut(s)	197
BoxI	GACNNNNGTC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	346
BsaBI	GATNNNNATC	5 cut(s)	71, 77, 83, 89, 95
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 499
Bse1I	ACTGG	3 cut(s)	425, 482, 514
Bse8I	GATNNNNATC	5 cut(s)	71, 77, 83, 89, 95
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	101, 360, 408
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	163, 403
BseJI	GATNNNNATC	5 cut(s)	71, 77, 83, 89, 95
BseLI	CCNNNNNNNGG	2 cut(s)	100, 499
BseNI	ACTGG	3 cut(s)	425, 482, 514
BseYI	CCCAGC	2 cut(s)	56, 104
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	109, 402
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	151, 477
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	100, 499
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	109, 402
Bsp1286I	GDGCHC	2 cut(s)	151, 477
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
BspACI	CCGC	2 cut(s)	182, 387
BspANI	GGCC	2 cut(s)	109, 402
BspEI	TCCGGA	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	7, 98, 463
BspMI	ACCTGC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	7 cut(s)	13, 74, 80, 85, 91, 104, 510
BsrI	ACTGG	3 cut(s)	425, 482, 514
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
Bst2UI	CCWGG	3 cut(s)	101, 360, 408
Bst4CI	ACNGT	2 cut(s)	227, 260
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	163, 403
BstKTI	GATC	8 cut(s)	8, 69, 75, 81, 87, 93, 99, 505
BstMBI	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 384
BstNI	CCWGG	3 cut(s)	101, 360, 408
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	3 cut(s)	99, 358, 406
BstX2I	RGATCY	3 cut(s)	5, 90, 96
BstYI	RGATCY	3 cut(s)	5, 90, 96
BsuRI	GGCC	2 cut(s)	109, 402
BtsCI	GGATG	2 cut(s)	163, 403
BtsI	GCAGTG	2 cut(s)	306, 452
BtsIMutI	CAGTG	4 cut(s)	232, 306, 452, 475
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	29, 107
Csp6I	GTAC	1 cut(s)	322
CviJI	RGCY	7 cut(s)	56, 104, 109, 149, 165, 273, 402
CviKI_1	RGCY	7 cut(s)	56, 104, 109, 149, 165, 273, 402
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	8 cut(s)	7, 68, 74, 80, 86, 92, 98, 504
DpnII	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoRII	CCWGG	3 cut(s)	99, 358, 406
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	1 cut(s)	440
FaqI	GGGAC	1 cut(s)	320
FauI	CCCGC	1 cut(s)	189
FokI	GGATG	2 cut(s)	170, 410
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	194
GsaI	CCCAGC	2 cut(s)	60, 108
HaeIII	GGCC	2 cut(s)	109, 402
HapII	CCGG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	113, 215
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	179, 218
Hpy188I	TCNGA	4 cut(s)	23, 118, 279, 291
Hpy188III	TCNNGA	6 cut(s)	70, 76, 82, 88, 94, 266
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	227, 260
HpyCH4V	TGCA	2 cut(s)	347, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 384
Kpn2I	TCCGGA	1 cut(s)	93
Kzo9I	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
LmnI	GCTCC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	134, 254, 449
MalI	GATC	8 cut(s)	7, 68, 74, 80, 86, 92, 98, 504
MboI	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
MboII	GAAGA	3 cut(s)	251, 254, 344
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	3 cut(s)	5, 90, 96
MhlI	GDGCHC	2 cut(s)	151, 477
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	45, 454
MluNI	TGGCCA	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	4 cut(s)	195, 229, 366, 387
Mox20I	TGGCCA	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	48, 174
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	3 cut(s)	101, 360, 408
MunI	CAATTG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	3 cut(s)	101, 360, 408
MwoI	GCNNNNNNNGC	2 cut(s)	190, 384
NdeII	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
NheI	GCTAGC	1 cut(s)	193
NlaIV	GGNNCC	3 cut(s)	7, 98, 463
NmuCI	GTSAC	3 cut(s)	134, 254, 449
PaqCI	CACCTGC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	113, 215
PshAI	GACNNNNGTC	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	99, 358, 406
PspFI	CCCAGC	2 cut(s)	56, 104
PspGI	CCWGG	3 cut(s)	99, 358, 406
PspN4I	GGNNCC	3 cut(s)	7, 98, 463
PspPI	GGNCC	2 cut(s)	29, 107
PsuI	RGATCY	3 cut(s)	5, 90, 96
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	48, 174
Sau3AI	GATC	8 cut(s)	5, 66, 72, 78, 84, 90, 96, 502
Sau96I	GGNCC	2 cut(s)	29, 107
ScrFI	CCNGG	3 cut(s)	101, 360, 408
SduI	GDGCHC	2 cut(s)	151, 477
SetI	ASST	5 cut(s)	151, 192, 208, 256, 275
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	45, 454
SsiI	CCGC	2 cut(s)	182, 387
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	3 cut(s)	99, 358, 406
TaaI	ACNGT	2 cut(s)	227, 260
TaqI	TCGA	4 cut(s)	75, 81, 87, 218
TasI	AATT	2 cut(s)	45, 454
TfiI	GAWTC	2 cut(s)	113, 215
Tru1I	TTAA	2 cut(s)	48, 174
Tru9I	TTAA	2 cut(s)	48, 174
TscAI	CASTG	4 cut(s)	232, 313, 452, 482
TseFI	GTSAC	3 cut(s)	134, 254, 449
Tsp45I	GTSAC	3 cut(s)	134, 254, 449
TspDTI	ATGAA	2 cut(s)	455, 501
TspRI	CASTG	4 cut(s)	232, 313, 452, 482
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	48
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.