Rw7G028760

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008120
Physical Location & Seq
Forward (+)
39443765 .. 39445374
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028760.1

Sequence Viewer

Length: 495 bp
ATGAACCGCCAGCCAACACAAGTCGAAGAGAAACCCAAATCCGATCTGGGATTCAGATCAGGATCTGACGGCCAGCGAAAGAAGCGGCGTCGAGCTGTAGATGTGGAAGTCTATATTGGATATGAAGACAGTTATCCACTGTTAGAGTTTGAACCTGATGAATGTCTGATATGCGGTCAGATCACTACACACGGCACTCCATGGTGTCCGTATAAGGAATTCGTCCCACATGATGCATCTCTTCCTCCTGGCATTCAAAGAGTTTGCAGGTGTTGCGGTAAGAGGGATGGCCACCCTGGTGAGGATTGGGAAGCCTGTGCTATTCTCAAGAGGTGTACAGATTGTGGTACCTTAGGTGAGCACTGGAATGGGGACTCAGACTGTCCGACCAAGACTGGTAAGCCCCGGTGCACCGAAGAGACCGAAGAGGAAAAGCCAGATAGCTATAAACAAACTGGTCGGATCTTTCTGTTTCTTGACGAGGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.69

Weight (kDa)

4.94

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 258
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 4 cut(s) 7, 85, 174, 276
AclWI GGATC 2 cut(s) 70, 470
AcoI YGGCCR 2 cut(s) 70, 289
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 2 cut(s) 337, 349
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 152, 257
AjnI CCWGG 2 cut(s) 247, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 2 cut(s) 95, 444
AluI AGCT 2 cut(s) 95, 444
Alw21I GWGCWC 2 cut(s) 363, 413
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 409
AlwI GGATC 2 cut(s) 70, 470
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 2 cut(s) 70, 289
ApaLI GTGCAC 1 cut(s) 409
ApoI RAATTY 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 311, 368
AxyI CCTNAGG 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 291
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 363, 413
BccI CCATC 1 cut(s) 281
BceAI ACGGC 2 cut(s) 85, 208
BciT130I CCWGG 2 cut(s) 249, 297
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 493
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 3 cut(s) 249, 297, 406
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 249, 297, 406
BmsI GCATC 2 cut(s) 223, 245
BpiI GAAGAC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 406
BsaBI GATNNNNATC 2 cut(s) 55, 61
BsaHI GRCGYC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 200, 295, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 368, 400, 460
Bse21I CCTNAGG 1 cut(s) 352
Bse8I GATNNNNATC 2 cut(s) 55, 61
BseBI CCWGG 2 cut(s) 249, 297
BseDI CCNNGG 3 cut(s) 200, 295, 404
BseGI GGATG 2 cut(s) 292, 490
BseJI GATNNNNATC 2 cut(s) 55, 61
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 368, 400, 460
BseSI GKGCMC 1 cut(s) 413
BshFI GGCC 2 cut(s) 72, 291
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 363, 413
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 2 cut(s) 209, 386
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 209, 386
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 2 cut(s) 72, 291
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 363, 413
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 5 cut(s) 43, 56, 62, 180, 462
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 4 cut(s) 7, 85, 174, 276
BspANI GGCC 2 cut(s) 72, 291
BspCNI CTCAG 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 70, 470
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 3 cut(s) 368, 400, 460
BssECI CCNNGG 3 cut(s) 200, 295, 404
BssMI GATC 5 cut(s) 43, 56, 62, 180, 462
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 249, 297
Bst4CI ACNGT 3 cut(s) 131, 141, 383
Bst6I CTCTTC 4 cut(s) 21, 246, 411, 420
BstACI GRCGYC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 273
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 11, 74
BstDEI CTNAG 2 cut(s) 352, 376
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 292, 490
BstKTI GATC 5 cut(s) 46, 59, 65, 183, 465
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 5 cut(s) 43, 56, 62, 180, 462
BstMWI GCNNNNNNNGC 2 cut(s) 82, 273
BstNI CCWGG 2 cut(s) 249, 297
BstSCI CCNGG 3 cut(s) 247, 295, 404
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 62, 462
BstYI RGATCY 2 cut(s) 62, 462
Bsu36I CCTNAGG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 72, 291
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 292, 490
BtsIMutI CAGTG 2 cut(s) 137, 361
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 11, 74
CaiI CAGNNNCTG 1 cut(s) 65
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 336, 348
CviAII CATG 2 cut(s) 201, 230
CviJI RGCY 8 cut(s) 13, 72, 95, 291, 314, 403, 436, 444
CviKI_1 RGCY 8 cut(s) 13, 72, 95, 291, 314, 403, 436, 444
CviQI GTAC 2 cut(s) 336, 348
DdeI CTNAG 2 cut(s) 352, 376
DpnI GATC 5 cut(s) 45, 58, 64, 182, 464
DpnII GATC 5 cut(s) 43, 56, 62, 180, 462
EaeI YGGCCR 2 cut(s) 70, 289
Eam1104I CTCTTC 4 cut(s) 21, 246, 411, 420
EarI CTCTTC 4 cut(s) 21, 246, 411, 420
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 413
Eco81I CCTNAGG 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 247, 295
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 204, 233
FaiI YATR 7 cut(s) 114, 123, 172, 202, 213, 231, 447
FaqI GGGAC 2 cut(s) 209, 386
FatI CATG 2 cut(s) 200, 229
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 493
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 72, 291
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 2 cut(s) 204, 233
HinfI GANTC 2 cut(s) 51, 374
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 311, 368
Hpy166II GTNNAC 2 cut(s) 336, 411
Hpy188I TCNGA 8 cut(s) 43, 56, 67, 168, 180, 379, 387, 462
Hpy188III TCNNGA 3 cut(s) 60, 328, 476
Hpy8I GTNNAC 2 cut(s) 336, 411
Hpy99I CGWCG 1 cut(s) 93
HpyCH4III ACNGT 3 cut(s) 131, 141, 383
HpyCH4V TGCA 3 cut(s) 236, 267, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 273
HpyF3I CTNAG 2 cut(s) 352, 376
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 2 cut(s) 204, 233
KpnI GGTACC 1 cut(s) 351
Kzo9I GATC 5 cut(s) 43, 56, 62, 180, 462
LweI GCATC 2 cut(s) 223, 245
MaeI CTAG 1 cut(s) 493
MalI GATC 5 cut(s) 45, 58, 64, 182, 464
MboI GATC 5 cut(s) 43, 56, 62, 180, 462
MboII GAAGA 5 cut(s) 38, 137, 233, 428, 437
MflI RGATCY 2 cut(s) 62, 462
MhlI GDGCHC 2 cut(s) 363, 413
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 410, 440
MnlI CCTC 7 cut(s) 255, 276, 295, 324, 421, 475, 481
Mox20I TGGCCA 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 238
MscI TGGCCA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 297, 366
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 3 cut(s) 249, 297, 406
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 2 cut(s) 249, 297
MwoI GCNNNNNNNGC 2 cut(s) 82, 273
NciI CCSGG 1 cut(s) 406
NcoI CCATGG 1 cut(s) 200
NdeII GATC 5 cut(s) 43, 56, 62, 180, 462
NlaIII CATG 2 cut(s) 204, 233
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 258
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 247, 295
PspGI CCWGG 2 cut(s) 247, 295
PspN4I GGNNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 62, 462
RsaI GTAC 2 cut(s) 337, 349
RsaNI GTAC 2 cut(s) 336, 348
RseI CAYNNNNRTG 2 cut(s) 297, 366
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 5 cut(s) 43, 56, 62, 180, 462
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 249, 297, 406
SduI GDGCHC 2 cut(s) 363, 413
SetI ASST 7 cut(s) 97, 157, 272, 335, 353, 358, 446
SfaNI GCATC 2 cut(s) 223, 245
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 297, 366
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 218
SsiI CCGC 4 cut(s) 7, 85, 174, 276
SspMI CTAG 1 cut(s) 493
StyD4I CCNGG 3 cut(s) 247, 295, 404
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 131, 141, 383
TaqI TCGA 2 cut(s) 24, 91
TaqII GACCGA 1 cut(s) 437
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 335
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 51
TscAI CASTG 2 cut(s) 144, 368
TspDTI ATGAA 3 cut(s) 17, 138, 174
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 144, 368
VneI GTGCAC 1 cut(s) 409
XapI RAATTY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.