Rroxscaffold_1G00074660

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008120
Physical Location & Seq
Forward (+)
95573401 .. 95574733
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074660.1

Sequence Viewer

Length: 486 bp
ATGAAGCCAACACAAGTCGCGGAGAAACCCCTTTCATATCAGGGATCGAGATCGAGATCCGGATCCTGGCTGGGCCAGAATCGGATCCGCTCGTTCGTGAGTGACCCCAAACGAGCTCGTTTGGATGATGGCTTCTTTATTAAAATCCCACCTCACCTGCTAGCAGATTTAGGTGATGATGACTCGACTGACAGTGAAGCAGAGGAAGAAGAAAAAGAAGGTCACGGTCGTCTTGACAGCTGTCTGATTTGTGGTCGCATTGTTAGACATCACACTGCTAAATGCCCGTACTTGAGATTAGTCCCACACAATGCAACTCTACCTCCTGGCGTTCAAAGACTTTGCAAGTGTTGCGGTTTGAGGGATGGCCACCCTGGTAGAACAGACTGGAAAGGATTTGTTGTTATGAAGCAGTGTGACAATTGTGGTTCCTATTTAGAGCACTGGACTGATGAATGCCCAAACAAGGATCATAATGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.18

Weight (kDa)

6.69

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 3 cut(s) 20, 88, 354
AclWI GGATC 7 cut(s) 51, 52, 57, 70, 79, 92, 477
AcoI YGGCCR 1 cut(s) 367
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 66, 466
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 3 cut(s) 65, 325, 373
AluBI AGCT 2 cut(s) 116, 240
AluI AGCT 2 cut(s) 116, 240
Alw21I GWGCWC 2 cut(s) 118, 444
AlwI GGATC 7 cut(s) 51, 52, 57, 70, 79, 92, 477
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 2 cut(s) 73, 367
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 146, 185
AsuNHI GCTAGC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 369
BamHI GGATCC 2 cut(s) 62, 84
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 118, 444
BccI CCATC 2 cut(s) 122, 359
BciT130I CCWGG 3 cut(s) 67, 327, 375
BfaI CTAG 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 165
Bme1390I CCNGG 3 cut(s) 67, 327, 375
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 64, 86, 430
BmrFI CCNGG 3 cut(s) 67, 327, 375
BmtI GCTAGC 1 cut(s) 164
BoxI GACNNNNGTC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 313
BsaBI GATNNNNATC 3 cut(s) 49, 55, 61
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 466
Bse1I ACTGG 3 cut(s) 392, 449, 481
Bse8I GATNNNNATC 3 cut(s) 49, 55, 61
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 3 cut(s) 67, 327, 375
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 2 cut(s) 130, 370
BseJI GATNNNNATC 3 cut(s) 49, 55, 61
BseLI CCNNNNNNNGG 2 cut(s) 66, 466
BseNI ACTGG 3 cut(s) 392, 449, 481
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 75, 369
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 118, 444
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 66, 466
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 2 cut(s) 75, 369
Bsp1286I GDGCHC 2 cut(s) 118, 444
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 6 cut(s) 44, 50, 56, 62, 84, 469
BspACI CCGC 3 cut(s) 20, 88, 354
BspANI GGCC 2 cut(s) 75, 369
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 64, 86, 430
BspMI ACCTGC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 7 cut(s) 51, 52, 57, 70, 79, 92, 477
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 3 cut(s) 392, 449, 481
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 6 cut(s) 44, 50, 56, 62, 84, 469
Bst2UI CCWGG 3 cut(s) 67, 327, 375
Bst4CI ACNGT 2 cut(s) 194, 227
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 130, 370
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 6 cut(s) 47, 53, 59, 65, 87, 472
BstMBI GATC 6 cut(s) 44, 50, 56, 62, 84, 469
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 3 cut(s) 67, 327, 375
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 65, 325, 373
BstUI CGCG 1 cut(s) 20
BstX2I RGATCY 3 cut(s) 56, 62, 84
BstYI RGATCY 3 cut(s) 56, 62, 84
BsuRI GGCC 2 cut(s) 75, 369
BtsCI GGATG 2 cut(s) 130, 370
BtsI GCAGTG 2 cut(s) 273, 419
BtsIMutI CAGTG 4 cut(s) 199, 273, 419, 442
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 7 cut(s) 7, 70, 75, 116, 132, 240, 369
CviKI_1 RGCY 7 cut(s) 7, 70, 75, 116, 132, 240, 369
CviQI GTAC 1 cut(s) 289
DpnI GATC 6 cut(s) 46, 52, 58, 64, 86, 471
DpnII GATC 6 cut(s) 44, 50, 56, 62, 84, 469
EaeI YGGCCR 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 65, 325, 373
EcoT38I GRGCYC 1 cut(s) 118
FaiI YATR 3 cut(s) 37, 407, 474
FaqI GGGAC 1 cut(s) 287
FokI GGATG 2 cut(s) 137, 377
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 2 cut(s) 75, 369
HapII CCGG 1 cut(s) 60
HinfI GANTC 2 cut(s) 79, 182
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 146, 185
Hpy188I TCNGA 2 cut(s) 84, 246
Hpy188III TCNNGA 5 cut(s) 48, 54, 60, 97, 233
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 194, 227
HpyCH4V TGCA 2 cut(s) 314, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 6 cut(s) 44, 50, 56, 62, 84, 469
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 3 cut(s) 101, 221, 416
MalI GATC 6 cut(s) 46, 52, 58, 64, 86, 471
MbiI CCGCTC 1 cut(s) 90
MboI GATC 6 cut(s) 44, 50, 56, 62, 84, 469
MboII GAAGA 2 cut(s) 218, 221
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 3 cut(s) 56, 62, 84
MhlI GDGCHC 2 cut(s) 118, 444
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 369
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 162, 196, 333, 354
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 369
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 67, 327, 375
MunI CAATTG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 3 cut(s) 67, 327, 375
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 6 cut(s) 44, 50, 56, 62, 84, 469
NheI GCTAGC 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 64, 86, 430
NmuCI GTSAC 3 cut(s) 101, 221, 416
PaqCI CACCTGC 1 cut(s) 165
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 3 cut(s) 65, 325, 373
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 3 cut(s) 65, 325, 373
PspN4I GGNNCC 3 cut(s) 64, 86, 430
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 3 cut(s) 56, 62, 84
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 6 cut(s) 44, 50, 56, 62, 84, 469
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 67, 327, 375
SduI GDGCHC 2 cut(s) 118, 444
SetI ASST 7 cut(s) 118, 154, 159, 175, 223, 242, 325
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 421
SsiI CCGC 3 cut(s) 20, 88, 354
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 65, 325, 373
TaaI ACNGT 2 cut(s) 194, 227
TaqI TCGA 3 cut(s) 47, 53, 185
TasI AATT 1 cut(s) 421
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 4 cut(s) 199, 280, 419, 449
TseFI GTSAC 3 cut(s) 101, 221, 416
Tsp45I GTSAC 3 cut(s) 101, 221, 416
TspDTI ATGAA 4 cut(s) 17, 24, 422, 468
TspRI CASTG 4 cut(s) 199, 280, 419, 449
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.