Rh7BG328000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008120
Physical Location & Seq
Forward (+)
32580818 .. 32583038
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG328000.1

Sequence Viewer

Length: 381 bp
ATGGGAGATGAAGACAGTTATCCACTTTTAGAGTTTGAACCTGATGAATGTCTGATATGCGGTCAGATCACTACACACGGTACTCCATGGTGTCCGTATAAGGAATTTGTCCCACATGATGCATCTCTTCCTCCTGGCATTCAAAGAGTTTGCAGGTGTTGCGGTAAGAGGGATGGCCACCCTGGTGAGGATTGGGAAGCCTGTGCTATTCTTAAGAGGTGTACAGATTGTGGTACCTTAGGTGAGCACTGGAATGGGGACTCAGACTGTCCAACCAAGACTGGTAAGCCCCGGTGCACCGAAGAGACCGAAGAGGAAAAGCCAGATAGCTATAAACAAACTGGTCGGATCTTTCTGTTTCTTGACGAGGATGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

4.49

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 2 cut(s) 60, 162
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 3 cut(s) 82, 223, 235
AfiI CCNNNNNNNGG 1 cut(s) 187
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 38, 143
AjnI CCWGG 2 cut(s) 133, 181
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw21I GWGCWC 2 cut(s) 249, 299
Alw26I GTCTC 1 cut(s) 299
Alw44I GTGCAC 1 cut(s) 295
AlwI GGATC 1 cut(s) 356
AoxI GGCC 1 cut(s) 175
ApaLI GTGCAC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 197, 254
AxyI CCTNAGG 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 177
BanI GGYRCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 249, 299
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 135, 183
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 379
BfrI CTTAAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 144
Bme1390I CCNGG 3 cut(s) 135, 183, 292
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 3 cut(s) 135, 183, 292
BmsI GCATC 2 cut(s) 109, 131
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 86, 181, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 3 cut(s) 254, 286, 346
Bse21I CCTNAGG 1 cut(s) 238
BseBI CCWGG 2 cut(s) 135, 183
BseDI CCNNGG 3 cut(s) 86, 181, 290
BseGI GGATG 2 cut(s) 178, 376
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 254, 286, 346
BseSI GKGCMC 1 cut(s) 299
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 249, 299
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 2 cut(s) 95, 272
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 95, 272
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 249, 299
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 66, 348
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 2 cut(s) 60, 162
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 3 cut(s) 254, 286, 346
BssECI CCNNGG 3 cut(s) 86, 181, 290
BssMI GATC 2 cut(s) 66, 348
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 135, 183
Bst4CI ACNGT 3 cut(s) 17, 80, 269
Bst6I CTCTTC 3 cut(s) 132, 297, 306
BstAFI CTTAAG 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 238, 262
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 178, 376
BstKTI GATC 2 cut(s) 69, 351
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 66, 348
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 135, 183
BstSCI CCNGG 3 cut(s) 133, 181, 290
BstSLI GKGCMC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 238
BsuRI GGCC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 2 cut(s) 178, 376
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 144
Csp6I GTAC 3 cut(s) 81, 222, 234
CviAII CATG 2 cut(s) 87, 116
CviJI RGCY 5 cut(s) 177, 200, 289, 322, 330
CviKI_1 RGCY 5 cut(s) 177, 200, 289, 322, 330
CviQI GTAC 3 cut(s) 81, 222, 234
DdeI CTNAG 2 cut(s) 238, 262
DpnI GATC 2 cut(s) 68, 350
DpnII GATC 2 cut(s) 66, 348
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 132, 297, 306
EarI CTCTTC 3 cut(s) 132, 297, 306
Eco130I CCWWGG 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 133, 181
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 2 cut(s) 90, 119
FaiI YATR 5 cut(s) 58, 88, 99, 117, 333
FaqI GGGAC 2 cut(s) 95, 272
FatI CATG 2 cut(s) 86, 115
FokI GGATG 1 cut(s) 185
FspBI CTAG 1 cut(s) 379
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 292
Hin1II CATG 2 cut(s) 90, 119
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 292
HphI GGTGA 2 cut(s) 197, 254
Hpy166II GTNNAC 2 cut(s) 222, 297
Hpy188I TCNGA 4 cut(s) 54, 66, 265, 348
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 2 cut(s) 222, 297
HpyCH4III ACNGT 3 cut(s) 17, 80, 269
HpyCH4V TGCA 3 cut(s) 122, 153, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 238, 262
Hsp92II CATG 2 cut(s) 90, 119
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 66, 348
LweI GCATC 2 cut(s) 109, 131
MaeI CTAG 1 cut(s) 379
MalI GATC 2 cut(s) 68, 350
MboI GATC 2 cut(s) 66, 348
MboII GAAGA 4 cut(s) 23, 119, 314, 323
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 249, 299
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 296, 326
MnlI CCTC 7 cut(s) 141, 162, 181, 210, 307, 361, 367
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 124
MscI TGGCCA 1 cut(s) 177
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 2 cut(s) 183, 252
Msp20I TGGCCA 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 135, 183, 292
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 2 cut(s) 135, 183
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 292
NcoI CCATGG 1 cut(s) 86
NdeII GATC 2 cut(s) 66, 348
NlaIII CATG 2 cut(s) 90, 119
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 144
PctI GAATGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 133, 181
PspGI CCWGG 2 cut(s) 133, 181
PspN4I GGNNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 3 cut(s) 82, 223, 235
RsaNI GTAC 3 cut(s) 81, 222, 234
RseI CAYNNNNRTG 2 cut(s) 183, 252
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 2 cut(s) 66, 348
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 135, 183, 292
SduI GDGCHC 2 cut(s) 249, 299
SetI ASST 6 cut(s) 43, 158, 221, 239, 244, 332
SfaNI GCATC 2 cut(s) 109, 131
SmiMI CAYNNNNRTG 2 cut(s) 183, 252
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 60, 162
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 133, 181, 290
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 3 cut(s) 17, 80, 269
TaqII GACCGA 1 cut(s) 323
TasI AATT 1 cut(s) 104
TatI WGTACW 1 cut(s) 221
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 24, 60
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 295
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.