Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Forward (+)

5961418 .. 5963593

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCTTCGAATTGGTTGTTGTCAACAGGAACTCGTGAAAACCCAATTGATTTGCTGTGAACATACACATAAAAAGTTTTACGAAGCACTGCATCAGGGACATTTTGGAAATGTGCTAGAGATGATACAAGATACAGATGTGCTGGAGAAAATAACAGAAAAGTTCATCTCTTGGGATTCTCCGGAAGTGCATGCTAATACAGCAGAGACACTTTGTGCTGTAGCAAGGTTCGCTCCACCTGGACTTGCTACTAAAATATCTAGCCCAAGTTTTATAGGAAGATTGTTCCGGCATGCTTTGGAGGACTCACGACCGCAATATGTTCTTATTAACTTATTGTCAGTGTGCTTGTATTTGTTAGACCCTACGAGGCTAAATTCGAGAACATATGAGAATTTTGGTAGACTTCAAATTACTCATGGATCTGTAGATACTGCTAATTCCGAGACTGTTGTTGGCATGCTGGAGATCCTAGGTGATTTGCTGAAGCTTTTGGATGTTTCAACGGTGGACAATGTGTTGCTAACTACATATGGCAAGTTACAGCCACCTCTTGGACAACATCGTTTAAAGATTGTAGAGTTCATTGCAGTATTACTGAGGGTGGGTGGTGAAACTGTTGAGAAGGAATTGATTCGTCTCGGAGCAATACAAAGAATTTTAGACTTGTTTTTCAAGTACCCATTTAACAACTTTGTCCATCACCACATAGAGAACATAATAGTATCATGTTTAGAAAGCAAGAATGCTCCTCTTGTACAACATCTTCTTTGTGAGTGTGATCTTGTCGGAAGAATACTTACAGCAGAAAATAATTACACATTAGAAACTGATCCAAACCGGCCGACAGTTCCTGATGAGGGTAGATCCCCACCCAGGTTAGGGAACATTGGACATTTAACACGTATATCCAACAAAATCATTCAACTGGGAAACAACAATAGCGAGATTCAGGCATATTTGCAGGTCCATACTTTTATTTCTTCATATATATGTTTCTTTTTCTGTGAGGTTCTAATATTTGTGTACTGCAATAAATATTTACATGAGAAGCATTCTTGTCAGGAAAATAGCGAGTGGACCGATTGGCATACGAATGTCCTATCAAGGCGTAATACTGTGGAGAATGTCTTTCTATGGGCTTGTGGGAACCCGGCAGTACAGGAGGAGATGTGTGATATGGAAGATGATTATAGAGCAGTTGAGCTGATACTTCCTACAAGCCCCTGTAGAAAAAAAAGGCGTTGCTCGCCGACAGATAATGATAGCGAAGATGTTAGAACATCTGAACTGGAAGACCAGAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

437

Amino Acids

49.8

Weight (kDa)

5.66

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	955
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	4 cut(s)	430, 463, 827, 861
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	3 cut(s)	376, 394, 657
AcuI	CTGAAG	1 cut(s)	506
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	4 cut(s)	680, 759, 1028, 1161
AfiI	CCNNNNNNNGG	5 cut(s)	554, 860, 876, 881, 882
AflIII	ACRYGT	1 cut(s)	902
AgsI	TTSAA	4 cut(s)	410, 504, 676, 926
AjnI	CCWGG	2 cut(s)	238, 875
AluBI	AGCT	2 cut(s)	490, 1207
AluI	AGCT	2 cut(s)	490, 1207
Alw26I	GTCTC	3 cut(s)	200, 440, 644
AlwI	GGATC	4 cut(s)	430, 463, 827, 861
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	842
ApoI	RAATTY	3 cut(s)	376, 394, 657
Asp700I	GAANNNNTTC	1 cut(s)	633
AspA2I	CCTAGG	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	967, 1080
AsuC2I	CCSGG	1 cut(s)	1154
AsuHPI	GGTGA	3 cut(s)	488, 623, 695
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	2 cut(s)	967, 1080
AvrII	CCTAGG	1 cut(s)	472
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BarI	GAAGNNNNNNTAC	4 cut(s)	750, 782, 784, 816
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	1302
BccI	CCATC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	240, 877
BcnI	CCSGG	1 cut(s)	1154
BcoDI	GTCTC	3 cut(s)	200, 440, 644
BfaI	CTAG	3 cut(s)	116, 261, 473
BfmI	CTRYAG	3 cut(s)	219, 426, 1228
BfuAI	ACCTGC	1 cut(s)	955
BlnI	CCTAGG	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	240, 877, 1154
Bme18I	GGWCC	2 cut(s)	967, 1080
BmgT120I	GGNCC	2 cut(s)	967, 1080
BmiI	GGNNCC	1 cut(s)	1151
BmrFI	CCNGG	3 cut(s)	240, 877, 1154
BmrI	ACTGGG	1 cut(s)	938
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	938
BpiI	GAAGAC	1 cut(s)	1302
BpmI	CTGGAG	2 cut(s)	164, 485
Bpu14I	TTCGAA	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	1154
BsaAI	YACGTR	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	472, 875
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	1157, 1187
Bsc4I	CCNNNNNNNGG	5 cut(s)	554, 860, 876, 881, 882
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	2 cut(s)	933, 1296
Bse3DI	GCAATG	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	240, 877
BseDI	CCNNGG	2 cut(s)	472, 875
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	5 cut(s)	554, 860, 876, 881, 882
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	2 cut(s)	933, 1296
BseRI	GAGGAG	2 cut(s)	741, 1181
BseX3I	CGGCCG	1 cut(s)	842
Bsh1285I	CGRYCG	2 cut(s)	314, 845
BshFI	GGCC	1 cut(s)	844
BsiEI	CGRYCG	2 cut(s)	314, 845
BsiSI	CCGG	4 cut(s)	182, 289, 841, 1154
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	5 cut(s)	554, 860, 876, 881, 882
BsmAI	GTCTC	3 cut(s)	200, 440, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	751, 1054
BsnI	GGCC	1 cut(s)	844
Bsp119I	TTCGAA	1 cut(s)	7
Bsp13I	TCCGGA	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	757
Bsp143I	GATC	5 cut(s)	422, 468, 781, 832, 866
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	1 cut(s)	591
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	1151
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	4 cut(s)	430, 463, 827, 861
BspT104I	TTCGAA	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	840
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	933, 1296
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	2 cut(s)	472, 875
BssMI	GATC	5 cut(s)	422, 468, 781, 832, 866
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	240, 877
Bst4CI	ACNGT	5 cut(s)	451, 508, 619, 850, 1120
BstAUI	TGTACA	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	905
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	4 cut(s)	192, 294, 461, 1250
BstDEI	CTNAG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	5 cut(s)	425, 471, 784, 835, 869
BstMAI	GTCTC	3 cut(s)	200, 440, 644
BstMBI	GATC	5 cut(s)	422, 468, 781, 832, 866
BstMCI	CGRYCG	2 cut(s)	314, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 230, 1249
BstNI	CCWGG	2 cut(s)	240, 877
BstNSI	RCATGY	3 cut(s)	194, 296, 463
BstSCI	CCNGG	3 cut(s)	238, 875, 1152
BstSFI	CTRYAG	3 cut(s)	219, 426, 1228
BstV2I	GAAGAC	1 cut(s)	1302
BstX2I	RGATCY	3 cut(s)	422, 468, 866
BstYI	RGATCY	3 cut(s)	422, 468, 866
BstZI	CGGCCG	1 cut(s)	842
BsuRI	GGCC	1 cut(s)	844
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 348
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	4 cut(s)	192, 294, 461, 1250
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	2 cut(s)	967, 1080
Csp6I	GTAC	4 cut(s)	679, 758, 1027, 1160
CviAII	CATG	6 cut(s)	191, 293, 419, 460, 729, 1046
CviJI	RGCY	8 cut(s)	264, 373, 490, 547, 844, 1142, 1207, 1224
CviKI_1	RGCY	8 cut(s)	264, 373, 490, 547, 844, 1142, 1207, 1224
CviQI	GTAC	4 cut(s)	679, 758, 1027, 1160
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	5 cut(s)	424, 470, 783, 834, 868
DpnII	GATC	5 cut(s)	422, 468, 781, 832, 866
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	842
EagI	CGGCCG	1 cut(s)	842
EclXI	CGGCCG	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	967, 1080
Eco52I	CGGCCG	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	238, 875
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	6 cut(s)	194, 296, 422, 463, 732, 1049
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	6 cut(s)	190, 292, 418, 459, 728, 1045
FauNDI	CATATG	2 cut(s)	388, 532
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	1 cut(s)	509
FspBI	CTAG	3 cut(s)	116, 261, 473
GsuI	CTGGAG	2 cut(s)	164, 485
HaeIII	GGCC	1 cut(s)	844
HapII	CCGG	4 cut(s)	182, 289, 841, 1154
Hin1II	CATG	6 cut(s)	194, 296, 422, 463, 732, 1049
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	176, 305, 634, 949
HpaII	CCGG	4 cut(s)	182, 289, 841, 1154
HphI	GGTGA	3 cut(s)	488, 623, 695
Hpy166II	GTNNAC	6 cut(s)	23, 59, 404, 511, 1027, 1080
Hpy188I	TCNGA	4 cut(s)	445, 644, 791, 1288
Hpy188III	TCNNGA	6 cut(s)	34, 182, 309, 381, 854, 1064
Hpy8I	GTNNAC	6 cut(s)	23, 59, 404, 511, 1027, 1080
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	5 cut(s)	451, 508, 619, 850, 1120
HpyCH4IV	ACGT	1 cut(s)	904
HpyCH4V	TGCA	5 cut(s)	91, 190, 590, 964, 1032
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 230, 1249
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	904
Hsp92II	CATG	6 cut(s)	194, 296, 422, 463, 732, 1049
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	422, 468, 781, 832, 866
LmnI	GCTCC	3 cut(s)	238, 644, 754
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	116, 261, 473
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	5 cut(s)	424, 470, 783, 834, 868
MboI	GATC	5 cut(s)	422, 468, 781, 832, 866
MboII	GAAGA	7 cut(s)	291, 758, 804, 975, 1196, 1283, 1307
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	3 cut(s)	422, 468, 866
MluCI	AATT	9 cut(s)	9, 44, 376, 394, 411, 439, 629, 657, 814
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	769, 936
MnlI	CCTC	8 cut(s)	295, 363, 561, 594, 762, 853, 1003, 1159
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	4 cut(s)	330, 569, 687, 899
MslI	CAYNNNNRTG	2 cut(s)	991, 1095
MspI	CCGG	4 cut(s)	182, 289, 841, 1154
MspR9I	CCNGG	3 cut(s)	240, 877, 1154
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	2 cut(s)	751, 1054
MvaI	CCWGG	2 cut(s)	240, 877
MwoI	GCNNNNNNNGC	3 cut(s)	200, 230, 1249
NciI	CCSGG	1 cut(s)	1154
NdeI	CATATG	2 cut(s)	388, 532
NdeII	GATC	5 cut(s)	422, 468, 781, 832, 866
NlaIII	CATG	6 cut(s)	194, 296, 422, 463, 732, 1049
NlaIV	GGNNCC	1 cut(s)	1151
NspI	RCATGY	3 cut(s)	194, 296, 463
NspV	TTCGAA	1 cut(s)	7
PaeI	GCATGC	3 cut(s)	194, 296, 463
PctI	GAATGC	2 cut(s)	751, 1054
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	176, 634, 949
PflMI	CCANNNNNTGG	1 cut(s)	554
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	238, 875
PspGI	CCWGG	2 cut(s)	238, 875
PspN4I	GGNNCC	1 cut(s)	1151
PspPI	GGNCC	2 cut(s)	967, 1080
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	3 cut(s)	422, 468, 866
RsaI	GTAC	4 cut(s)	680, 759, 1028, 1161
RsaNI	GTAC	4 cut(s)	679, 758, 1027, 1160
RseI	CAYNNNNRTG	2 cut(s)	991, 1095
SaqAI	TTAA	4 cut(s)	330, 569, 687, 899
Sau3AI	GATC	5 cut(s)	422, 468, 781, 832, 866
Sau96I	GGNCC	2 cut(s)	967, 1080
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	240, 877, 1154
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	3 cut(s)	219, 426, 1228
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	2 cut(s)	967, 1080
SmiMI	CAYNNNNRTG	2 cut(s)	991, 1095
SphI	GCATGC	3 cut(s)	194, 296, 463
Sse9I	AATT	9 cut(s)	9, 44, 376, 394, 411, 439, 629, 657, 814
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	2 cut(s)	1020, 1040
SspMI	CTAG	3 cut(s)	116, 261, 473
StyD4I	CCNGG	3 cut(s)	238, 875, 1152
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	5 cut(s)	451, 508, 619, 850, 1120
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	2 cut(s)	7, 380
TaqII	GACCGA	1 cut(s)	1097
TasI	AATT	9 cut(s)	9, 44, 376, 394, 411, 439, 629, 657, 814
TatI	WGTACW	3 cut(s)	757, 1026, 1159
TfiI	GAWTC	3 cut(s)	176, 634, 949
Tru1I	TTAA	4 cut(s)	330, 569, 687, 899
Tru9I	TTAA	4 cut(s)	330, 569, 687, 899
TscAI	CASTG	2 cut(s)	93, 348
TspDTI	ATGAA	3 cut(s)	154, 574, 975
TspRI	CASTG	2 cut(s)	93, 348
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	2 cut(s)	967, 1080
XapI	RAATTY	3 cut(s)	376, 394, 657
XceI	RCATGY	3 cut(s)	194, 296, 463
XmaJI	CCTAGG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	116, 261, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.