Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

42877358 .. 42887380

Gene Structure 10023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG360000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGACGATGGGGAACCTTGTTGAGGAGGAGGACCACCATCAAAACAATAACATCGACCAGTTTGGTCCTTTCTCGACGCATTTCCAGAAGGACACAGTGCTTAAAAATCAAAATAATAACATGGCCATTGGGAACATTGAGAACAGAAGTGCTGAGCTGCAGGACAAGTTAAAGCCATTGGACGAGGATATGAAGATTGGGAATTTCGGCCCTTCGTTGGAAGAAGATGGCATTATTCTTCCAGAGCAATTTCGTGAACGGTGGGAACGTTTCCTAGGCCCCAAGAACACCGGCTTGAAGACAATTCAGCATCTGACAGGCTGCAGTGTTTTCTTTCATGGAAATTTCACTGTTGCTGTAATTGGTAAATTTGAAGGATTAAAGATGGTCAGGAGGATTGTGGTAGACTGCATTCGAAATAAAATGCGTCCTAGTGTCCATATCAGAAGGCTTCGGATGAATCAAAATGAGCACAAACTTACGAAGAAGCTATTTGATCAAGGTGGATATAGATCTATCATGGAGGATTCTCTAGAGGTGCATGTTGATGCAGCAGAAACCCTTTGTGCTATAACAAGGCTTGCTCCACCTGGACTTGCTACTAAAATCTGTAATCCGAGTTTTATACAAAGATTGCTTCAGCATGCTATGGAAGACTCTCAACGAAAATCTGTTCTCACTCGCTCATTATCGGTTTGCATCTCTTTGTTAGACCGTGAGAGGGAAGCTTTGAGAACAAATGCATGTACTGGTGAACACCAGCCTGCTCATGGATCTACAATTACTGTTAATAACAAGATTGTTGTGGCCATGCTTGACAGCCTAGGTGATTTGCTGAAACTTTTAGATTTCGTAGTCAAGCTGCAGAAGGAATTGATTCGTATTGCAGCAATACAAAAAGTCTTAGACTTGTTTTTTAAGTACCCATATAACAATTTTTTGCATCACCACATAGAGAACATAATCGTATCATGTTTGGAAAGCAAAAATGGGCCTCTTGTACAACATCTTCTTTGTGAATGTGATCTTGTTGGAAAAATACTTGAAGCAGAAAAGAATTTCACACTGGCCGCTGATTCATTTATGCCAACAATTCCTGCTAAGGGTAGATCCCCACCCAGGAACGGCAATATTGGACATTTGACATGTATATCCAACAAAATCATTCAACTGGGAAACAACAATAGGGAGATTCAGGCATATCTGCAGGAAAACAGTGTCTGGACTGAATGGCATACAGAAGTCCTATTAAAGCGTAATGCAGTGGAGAATGTCTCCCAGTGGGCGTGCGGGTATGTTTTGCAATTGCATATTCCGAGTCAAGATGCACCACCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

446

Amino Acids

50.59

Weight (kDa)

7.28

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_2nd	PF21800	82 - 155	4.2e-17	KRR1 small subunit processome component, second KH domain
SAPS	PF04499	290 - 425	2.9e-27	SIT4 phosphatase-associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	2 cut(s)	1071, 1290
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	2 cut(s)	781, 1104
AcoI	YGGCCR	3 cut(s)	123, 807, 1068
AcsI	RAATTY	4 cut(s)	202, 343, 368, 1057
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	748, 923, 1002
AfiI	CCNNNNNNNGG	7 cut(s)	22, 217, 721, 770, 1103, 1119, 1124
AflIII	ACRYGT	1 cut(s)	1145
AgsI	TTSAA	4 cut(s)	298, 374, 1046, 1169
AjnI	CCWGG	2 cut(s)	589, 1118
AluBI	AGCT	4 cut(s)	157, 490, 728, 862
AluI	AGCT	4 cut(s)	157, 490, 728, 862
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	1279
AlwI	GGATC	2 cut(s)	781, 1104
AlwNI	CAGNNNCTG	2 cut(s)	313, 1221
AoxI	GGCC	6 cut(s)	123, 208, 277, 807, 992, 1068
ApeKI	GCWGC	5 cut(s)	157, 321, 551, 862, 887
ApoI	RAATTY	4 cut(s)	202, 343, 368, 1057
Asp700I	GAANNNNTTC	1 cut(s)	876
AspA2I	CCTAGG	2 cut(s)	274, 823
AspS9I	GGNCC	5 cut(s)	31, 65, 209, 278, 992
AsuHPI	GGTGA	3 cut(s)	764, 839, 938
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	31, 65
AvrII	CCTAGG	2 cut(s)	274, 823
BalI	TGGCCA	2 cut(s)	125, 809
BarI	GAAGNNNNNNTAC	2 cut(s)	993, 1025
BbsI	GAAGAC	2 cut(s)	305, 660
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	144, 308, 563, 849, 899
BccI	CCATC	3 cut(s)	45, 221, 379
BceAI	ACGGC	1 cut(s)	1141
BciT130I	CCWGG	2 cut(s)	591, 1120
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	1279
BfaI	CTAG	4 cut(s)	275, 432, 533, 824
BfmI	CTRYAG	4 cut(s)	158, 322, 863, 1205
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	6 cut(s)	158, 322, 552, 863, 888, 1071
BlnI	CCTAGG	2 cut(s)	274, 823
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	159, 323, 553, 864, 889, 1072
Bme1390I	CCNGG	2 cut(s)	591, 1120
Bme18I	GGWCC	2 cut(s)	31, 65
BmgT120I	GGNCC	5 cut(s)	31, 65, 209, 278, 992
BmiI	GGNNCC	2 cut(s)	14, 280
BmrFI	CCNGG	2 cut(s)	591, 1120
BmrI	ACTGGG	2 cut(s)	1181, 1273
BmsI	GCATC	5 cut(s)	319, 538, 708, 952, 1315
BmuI	ACTGGG	2 cut(s)	1181, 1273
BpiI	GAAGAC	2 cut(s)	305, 660
BplI	GAGNNNNNCTC	2 cut(s)	1259, 1291
Bpu10I	CCTNAGC	1 cut(s)	1101
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	274, 823, 1118
Bsc4I	CCNNNNNNNGG	7 cut(s)	22, 217, 721, 770, 1103, 1119, 1124
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	5 cut(s)	58, 754, 1071, 1176, 1279
Bse8I	GATNNNNATC	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	591, 1120
BseDI	CCNNGG	3 cut(s)	274, 823, 1118
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	7 cut(s)	22, 217, 721, 770, 1103, 1119, 1124
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	5 cut(s)	58, 754, 1071, 1176, 1279
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	5 cut(s)	144, 308, 563, 849, 899
BshFI	GGCC	6 cut(s)	125, 210, 279, 809, 994, 1070
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	7 cut(s)	22, 217, 721, 770, 1103, 1119, 1124
BsmAI	GTCTC	1 cut(s)	1279
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	6 cut(s)	125, 210, 279, 809, 994, 1070
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	1000
Bsp143I	GATC	5 cut(s)	496, 512, 773, 1024, 1109
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	1071, 1290
BspANI	GGCC	6 cut(s)	125, 210, 279, 809, 994, 1070
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	14, 280
BspMAI	CTGCAG	4 cut(s)	162, 326, 867, 1209
BspPI	GGATC	2 cut(s)	781, 1104
BspT104I	TTCGAA	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	1000
BsrI	ACTGG	5 cut(s)	58, 754, 1071, 1176, 1279
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	274, 823, 1118
BssMI	GATC	5 cut(s)	496, 512, 773, 1024, 1109
BssT1I	CCWWGG	2 cut(s)	274, 823
Bst2UI	CCWGG	2 cut(s)	591, 1120
Bst4CI	ACNGT	6 cut(s)	97, 261, 352, 716, 787, 1217
BstAUI	TGTACA	1 cut(s)	1000
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	582, 645, 765, 1288
BstDEI	CTNAG	3 cut(s)	153, 904, 1101
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	462
BstKTI	GATC	5 cut(s)	499, 515, 776, 1027, 1112
BstMAI	GTCTC	1 cut(s)	1279
BstMBI	GATC	5 cut(s)	496, 512, 773, 1024, 1109
BstNI	CCWGG	2 cut(s)	591, 1120
BstNSI	RCATGY	4 cut(s)	545, 647, 747, 1149
BstSCI	CCNGG	2 cut(s)	589, 1118
BstSFI	CTRYAG	4 cut(s)	158, 322, 863, 1205
BstV1I	GCAGC	5 cut(s)	144, 308, 563, 849, 899
BstV2I	GAAGAC	2 cut(s)	305, 660
BstX2I	RGATCY	3 cut(s)	512, 773, 1109
BstYI	RGATCY	3 cut(s)	512, 773, 1109
BsuRI	GGCC	6 cut(s)	125, 210, 279, 809, 994, 1070
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	2 cut(s)	331, 1269
BtsIMutI	CAGTG	7 cut(s)	102, 331, 348, 1064, 1222, 1269, 1286
Cac8I	GCNNGC	4 cut(s)	582, 645, 765, 1288
CaiI	CAGNNNCTG	2 cut(s)	313, 1221
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	5 cut(s)	31, 65, 209, 278, 992
CseI	GACGC	2 cut(s)	85, 416
Csp6I	GTAC	3 cut(s)	747, 922, 1001
CviQI	GTAC	3 cut(s)	747, 922, 1001
DdeI	CTNAG	3 cut(s)	153, 904, 1101
DpnI	GATC	5 cut(s)	498, 514, 775, 1026, 1111
DpnII	GATC	5 cut(s)	496, 512, 773, 1024, 1109
EaeI	YGGCCR	3 cut(s)	123, 807, 1068
Eco130I	CCWWGG	2 cut(s)	274, 823
Eco47I	GGWCC	2 cut(s)	31, 65
Eco57I	CTGAAG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	589, 1118
EcoT14I	CCWWGG	2 cut(s)	274, 823
EcoT22I	ATGCAT	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	274, 823
FauI	CCCGC	1 cut(s)	1283
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	6 cut(s)	158, 322, 552, 863, 888, 1071
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	6 cut(s)	158, 322, 552, 863, 888, 1071
FspBI	CTAG	4 cut(s)	275, 432, 533, 824
GluI	GCNGC	6 cut(s)	158, 322, 552, 863, 888, 1071
HaeIII	GGCC	6 cut(s)	125, 210, 279, 809, 994, 1070
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	85, 416
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	7 cut(s)	460, 527, 656, 877, 1076, 1192, 1318
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	764, 839, 938
Hpy166II	GTNNAC	3 cut(s)	257, 406, 755
Hpy188I	TCNGA	6 cut(s)	315, 446, 456, 618, 1317, 1340
Hpy188III	TCNNGA	8 cut(s)	73, 85, 242, 254, 391, 533, 1222, 1322
Hpy8I	GTNNAC	3 cut(s)	257, 406, 755
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	82, 222, 368, 441, 862
HpyCH4III	ACNGT	6 cut(s)	97, 261, 352, 716, 787, 1217
HpyCH4IV	ACGT	1 cut(s)	268
HpyF3I	CTNAG	3 cut(s)	153, 904, 1101
HpySE526I	ACGT	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	496, 512, 773, 1024, 1109
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	5 cut(s)	144, 308, 563, 849, 899
LweI	GCATC	5 cut(s)	319, 538, 708, 952, 1315
MaeI	CTAG	4 cut(s)	275, 432, 533, 824
MaeII	ACGT	1 cut(s)	268
MalI	GATC	5 cut(s)	498, 514, 775, 1026, 1111
MboI	GATC	5 cut(s)	496, 512, 773, 1024, 1109
MboII	GAAGA	8 cut(s)	205, 230, 233, 236, 310, 496, 665, 1001
MfeI	CAATTG	1 cut(s)	1304
MflI	RGATCY	3 cut(s)	512, 773, 1109
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	2 cut(s)	125, 809
MluNI	TGGCCA	2 cut(s)	125, 809
MlyI	GAGTC	2 cut(s)	650, 1327
MmeI	TCCRAC	3 cut(s)	198, 1012, 1179
MnlI	CCTC	9 cut(s)	16, 19, 22, 178, 387, 517, 529, 714, 1005
Mox20I	TGGCCA	2 cut(s)	125, 809
Mph1103I	ATGCAT	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	2 cut(s)	125, 809
MseI	TTAA	6 cut(s)	102, 170, 380, 789, 918, 1250
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	2 cut(s)	125, 809
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	591, 1120
MunI	CAATTG	1 cut(s)	1304
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	591, 1120
NdeII	GATC	5 cut(s)	496, 512, 773, 1024, 1109
NlaIV	GGNNCC	2 cut(s)	14, 280
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	4 cut(s)	545, 647, 747, 1149
NspV	TTCGAA	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	647
PciI	ACATGT	1 cut(s)	1145
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	5 cut(s)	460, 527, 877, 1076, 1192
PkrI	GCNGC	6 cut(s)	159, 323, 553, 864, 889, 1072
PleI	GAGTC	2 cut(s)	650, 1326
PpsI	GAGTC	2 cut(s)	650, 1326
PscI	ACATGT	1 cut(s)	1145
Psp1406I	AACGTT	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	589, 1118
PspGI	CCWGG	2 cut(s)	589, 1118
PspN4I	GGNNCC	2 cut(s)	14, 280
PspPI	GGNCC	5 cut(s)	31, 65, 209, 278, 992
PstI	CTGCAG	4 cut(s)	162, 326, 867, 1209
PstNI	CAGNNNCTG	2 cut(s)	313, 1221
PsuI	RGATCY	3 cut(s)	512, 773, 1109
RsaI	GTAC	3 cut(s)	748, 923, 1002
RsaNI	GTAC	3 cut(s)	747, 922, 1001
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	6 cut(s)	102, 170, 380, 789, 918, 1250
SatI	GCNGC	6 cut(s)	158, 322, 552, 863, 888, 1071
Sau3AI	GATC	5 cut(s)	496, 512, 773, 1024, 1109
Sau96I	GGNCC	5 cut(s)	31, 65, 209, 278, 992
SchI	GAGTC	2 cut(s)	650, 1327
ScrFI	CCNGG	2 cut(s)	591, 1120
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	5 cut(s)	319, 538, 708, 952, 1315
SfcI	CTRYAG	4 cut(s)	158, 322, 863, 1205
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	2 cut(s)	31, 65
SmiMI	CAYNNNNRTG	1 cut(s)	546
SphI	GCATGC	1 cut(s)	647
SsiI	CCGC	2 cut(s)	1071, 1290
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	4 cut(s)	275, 432, 533, 824
StyD4I	CCNGG	2 cut(s)	589, 1118
StyI	CCWWGG	2 cut(s)	274, 823
TaaI	ACNGT	6 cut(s)	97, 261, 352, 716, 787, 1217
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	54, 74, 415
TatI	WGTACW	2 cut(s)	746, 1000
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	5 cut(s)	460, 527, 877, 1076, 1192
Tru1I	TTAA	6 cut(s)	102, 170, 380, 789, 918, 1250
Tru9I	TTAA	6 cut(s)	102, 170, 380, 789, 918, 1250
TscAI	CASTG	7 cut(s)	102, 331, 355, 1071, 1222, 1269, 1286
TseI	GCWGC	5 cut(s)	157, 321, 551, 862, 887
TspDTI	ATGAA	4 cut(s)	206, 326, 473, 1068
TspRI	CASTG	7 cut(s)	102, 331, 355, 1071, 1222, 1269, 1286
VpaK11BI	GGWCC	2 cut(s)	31, 65
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	4 cut(s)	202, 343, 368, 1057
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	4 cut(s)	545, 647, 747, 1149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmaJI	CCTAGG	2 cut(s)	274, 823
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	4 cut(s)	275, 432, 533, 824
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.