Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002321

Physical Location & Seq

Genomic Coordinates Reverse (-)

46828837 .. 46835287

Gene Structure 6451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTGAACCTTGTTGAGGAGGAGGACCACCATCAAAACAATAACATCGACAAGTTTGGTCCTTTCTCGACGCATTTCCAGAAGGACACAGTGCTTAAAAATCAAAATAATAACATGGCGATTGGGAACATTGAGAACAGCAGTGCTGAGCTGCAGGACAAGTTAAAGCCATTGGACGAGGATATGAAGATTGGGAATTTCGGCCCTTCGTTGGAAGAAGATGGCATTATTCTTCCAGTCACCTCTTTCTCTACTTTCTTTAAGAAAAATGAAGAAATATATCTGCAAAACGCTTGGCCTATGGTGAAATCTGCTTTAGAAGACTATGGTATTTCGTGCGCCCTGAATCTGGTTGAGGGTTCCATGACAGTTTCAACAACAACAAAGACTAGGGACCCAGATATTATTGAAAAGGCCAAGGAGCTTACTGAACTTTTGTCATTATATGTTCCCGCAGATGAGGCAATAAGAATACTGGATGCCAAAATGAAATGTGATTTCATTGAGATTGGAACAAAGAGAGGTGGGCTATGCGTAAAATATGGGATCGACATGGAGCAATTTCGTGAACGGTGGGAACGTTTCCTAGGCCCCAAGAACACCGGCTTGAAGACAATTCAGCATCTGACAGGCTGCAGTGTTTTCTTTCATGGAAATTTCACTGTTGCTGTAATTGGTAAATTTGAAGGATTAAAGATGGTCAGGAGGATTGTGGTAGACTGCATTCGAAATAAAATGCGTCCTAGTGTCCATATCAGAAGGCTTCGGATGAATCAAAATGAGCACAAACTTACGAAGAAGCTATTTGATCAAGGTGGATATAGATCTGTCATGGAGGCATCAGTATTCATGAAAACCTCATTTGATTTTCATGAACATATATCTACAAAGTTTGTGGAAGCACTGCATCAGATACATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

35.15

Weight (kDa)

6.61

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	82 - 160	1.6e-18	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	184 - 259	7.9e-18	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30470 AT1G30470 AT1G30470 AT2G28360 AT3G45190 AT3G45190
fragaria_vesca	FvH4_3g10000 FvH4_3g10000
malus_domestica	MD05G1274100.v1.1 MD10G1253800.v1.1
prunus_persica	Prupe.4G089700_v2.0.a1
pyrus_communis	pycom05g25550 pycom09g07810 pycom09g07840 pycom10g20940
rosa_chinensis	RchiOBHm_Chr5g0015881 RchiOBHm_Chr5g0049281 RchiOBHm_Chr5g0049291
rosa_laevigata	RLG00000034610
rosa_multiflora	Rmu_sc0000012.1_g000009 Rmu_sc0009674.1_g000007 Rmu_sc0012428.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032370 Rroxscaffold_1G00032380 Rroxscaffold_1G00060720
rosa_rugosa	Rorug05G0029700 Rorug05G0029800 Rorug05G0247400 Rorug05G0247500 Rorug05G0247600
rosa_samantha	Rh5AG123400 Rh5AG324000 Rh5BG122300 Rh5BG334900 Rh5BG335000 Rh5CG133500 Rh5CG360000 Rh5DG121700 Rh5DG347000 Rh5DG347100
rosa_wichuraiana	Rw5G010650 Rw5G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	1 cut(s)	453
AclI	AACGTT	1 cut(s)	580
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	3 cut(s)	196, 655, 680
AfiI	CCNNNNNNNGG	3 cut(s)	16, 211, 349
AgsI	TTSAA	4 cut(s)	375, 410, 610, 686
AluBI	AGCT	3 cut(s)	151, 424, 802
AluI	AGCT	3 cut(s)	151, 424, 802
Alw21I	GWGCWC	1 cut(s)	786
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	4 cut(s)	202, 296, 414, 589
ApeKI	GCWGC	2 cut(s)	151, 633
ApoI	RAATTY	3 cut(s)	196, 655, 680
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	5 cut(s)	25, 59, 203, 394, 590
AsuHPI	GGTGA	3 cut(s)	16, 232, 316
AsuII	TTCGAA	1 cut(s)	727
AvaII	GGWCC	3 cut(s)	25, 59, 394
AvrII	CCTAGG	1 cut(s)	586
BbsI	GAAGAC	2 cut(s)	327, 617
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	2 cut(s)	138, 620
BccI	CCATC	3 cut(s)	39, 215, 691
BclI	TGATCA	1 cut(s)	808
BfaI	CTAG	3 cut(s)	390, 587, 744
BfmI	CTRYAG	2 cut(s)	152, 634
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	2 cut(s)	152, 634
BlnI	CCTAGG	1 cut(s)	586
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	2 cut(s)	153, 635
Bme18I	GGWCC	3 cut(s)	25, 59, 394
BmgT120I	GGNCC	5 cut(s)	25, 59, 203, 394, 590
BmiI	GGNNCC	4 cut(s)	361, 395, 396, 592
BmsI	GCATC	4 cut(s)	469, 631, 848, 916
BpiI	GAAGAC	2 cut(s)	327, 617
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	727
BsaBI	GATNNNNATC	1 cut(s)	823
BsaJI	CCNNGG	2 cut(s)	417, 586
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 211, 349
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	236, 480
Bse8I	GATNNNNATC	1 cut(s)	823
BseDI	CCNNGG	2 cut(s)	417, 586
BseGI	GGATG	2 cut(s)	484, 774
BseJI	GATNNNNATC	1 cut(s)	823
BseLI	CCNNNNNNNGG	3 cut(s)	16, 211, 349
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	236, 480
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	2 cut(s)	138, 620
BshFI	GGCC	4 cut(s)	204, 298, 416, 591
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	16, 211, 349
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	4 cut(s)	204, 298, 416, 591
Bsp119I	TTCGAA	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	3 cut(s)	546, 808, 824
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	4 cut(s)	204, 298, 416, 591
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	3 cut(s)	849, 871, 920
BspLI	GGNNCC	4 cut(s)	361, 395, 396, 592
BspMAI	CTGCAG	2 cut(s)	156, 638
BspPI	GGATC	1 cut(s)	554
BspT104I	TTCGAA	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	236, 480
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	417, 586
BssMI	GATC	3 cut(s)	546, 808, 824
BssT1I	CCWWGG	2 cut(s)	417, 586
Bst4CI	ACNGT	4 cut(s)	91, 370, 573, 664
BstBI	TTCGAA	1 cut(s)	727
BstDEI	CTNAG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	484, 774
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	549, 811, 827
BstMBI	GATC	3 cut(s)	546, 808, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstSFI	CTRYAG	2 cut(s)	152, 634
BstV1I	GCAGC	2 cut(s)	138, 620
BstV2I	GAAGAC	2 cut(s)	327, 617
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BsuRI	GGCC	4 cut(s)	204, 298, 416, 591
BtsCI	GGATG	2 cut(s)	484, 774
BtsI	GCAGTG	3 cut(s)	148, 643, 902
BtsIMutI	CAGTG	5 cut(s)	96, 148, 643, 660, 902
CaiI	CAGNNNCTG	1 cut(s)	625
CciI	TCATGA	3 cut(s)	849, 871, 920
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	5 cut(s)	25, 59, 203, 394, 590
CseI	GACGC	2 cut(s)	79, 728
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	8 cut(s)	115, 364, 553, 650, 832, 850, 872, 921
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	548, 810, 826
DpnII	GATC	3 cut(s)	546, 808, 824
Eco130I	CCWWGG	2 cut(s)	417, 586
Eco47I	GGWCC	3 cut(s)	25, 59, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoO109I	RGGNCCY	2 cut(s)	394, 590
EcoT14I	CCWWGG	2 cut(s)	417, 586
ErhI	CCWWGG	2 cut(s)	417, 586
FaeI	CATG	8 cut(s)	118, 367, 556, 653, 835, 853, 875, 924
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	8 cut(s)	114, 363, 552, 649, 831, 849, 871, 920
FauI	CCCGC	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	152, 634
FokI	GGATG	2 cut(s)	491, 781
Fsp4HI	GCNGC	2 cut(s)	152, 634
FspBI	CTAG	3 cut(s)	390, 587, 744
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	152, 634
HaeIII	GGCC	4 cut(s)	204, 298, 416, 591
HapII	CCGG	1 cut(s)	603
HgaI	GACGC	2 cut(s)	79, 728
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	8 cut(s)	118, 367, 556, 653, 835, 853, 875, 924
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	346, 772
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	3 cut(s)	16, 232, 316
Hpy166II	GTNNAC	3 cut(s)	7, 569, 718
Hpy188I	TCNGA	4 cut(s)	627, 758, 768, 912
Hpy188III	TCNNGA	7 cut(s)	67, 79, 566, 703, 850, 872, 921
Hpy8I	GTNNAC	3 cut(s)	7, 569, 718
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	76, 216, 680, 753
HpyCH4III	ACNGT	4 cut(s)	91, 370, 573, 664
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	5 cut(s)	154, 286, 636, 723, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	8 cut(s)	118, 367, 556, 653, 835, 853, 875, 924
HspAI	GCGC	1 cut(s)	339
KflI	GGGWCCC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	546, 808, 824
LmnI	GCTCC	2 cut(s)	421, 556
Lsp1109I	GCAGC	2 cut(s)	138, 620
LweI	GCATC	4 cut(s)	469, 631, 848, 916
MaeI	CTAG	3 cut(s)	390, 587, 744
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	548, 810, 826
MboI	GATC	3 cut(s)	546, 808, 824
MboII	GAAGA	8 cut(s)	199, 224, 227, 230, 284, 332, 622, 808
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	6 cut(s)	196, 560, 615, 655, 672, 680
MmeI	TCCRAC	1 cut(s)	192
MseI	TTAA	4 cut(s)	96, 164, 261, 692
MspI	CCGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	3 cut(s)	546, 808, 824
NlaIII	CATG	8 cut(s)	118, 367, 556, 653, 835, 853, 875, 924
NlaIV	GGNNCC	4 cut(s)	361, 395, 396, 592
NmuCI	GTSAC	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	727
PagI	TCATGA	3 cut(s)	849, 871, 920
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	346, 772
PkrI	GCNGC	2 cut(s)	153, 635
PpuMI	RGGWCCY	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	394
PspN4I	GGNNCC	4 cut(s)	361, 395, 396, 592
PspPI	GGNCC	5 cut(s)	25, 59, 203, 394, 590
PspPPI	RGGWCCY	1 cut(s)	394
PstI	CTGCAG	2 cut(s)	156, 638
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	824
SaqAI	TTAA	4 cut(s)	96, 164, 261, 692
SatI	GCNGC	2 cut(s)	152, 634
Sau3AI	GATC	3 cut(s)	546, 808, 824
Sau96I	GGNCC	5 cut(s)	25, 59, 203, 394, 590
SduI	GDGCHC	1 cut(s)	786
SetI	ASST	9 cut(s)	12, 153, 245, 426, 526, 583, 804, 817, 860
SfaNI	GCATC	4 cut(s)	469, 631, 848, 916
SfcI	CTRYAG	2 cut(s)	152, 634
SfuI	TTCGAA	1 cut(s)	727
SinI	GGWCC	3 cut(s)	25, 59, 394
Sse9I	AATT	6 cut(s)	196, 560, 615, 655, 672, 680
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	3 cut(s)	390, 587, 744
StyI	CCWWGG	2 cut(s)	417, 586
TaaI	ACNGT	4 cut(s)	91, 370, 573, 664
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	48, 68, 549, 727
TasI	AATT	6 cut(s)	196, 560, 615, 655, 672, 680
TfiI	GAWTC	2 cut(s)	346, 772
Tru1I	TTAA	4 cut(s)	96, 164, 261, 692
Tru9I	TTAA	4 cut(s)	96, 164, 261, 692
TscAI	CASTG	5 cut(s)	96, 148, 643, 667, 909
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	151, 633
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	5 cut(s)	96, 148, 643, 667, 909
VpaK11BI	GGWCC	3 cut(s)	25, 59, 394
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	3 cut(s)	196, 655, 680
XmaJI	CCTAGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	3 cut(s)	390, 587, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.