Rroxscaffold_1G00032380

Serine threonine-protein phosphatase 6 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002321
Physical Location & Seq
Forward (+)
46316290 .. 46341547
25258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032380.1

Sequence Viewer

Length: 786 bp
ATGGAGGACTCTCAACACAAATCTGTTCTCACTAGCTCATTATCAGTTTGCATCTCTTTGTTAGACCGTGAGAGGGAAGCTTTGAGAACAAATGCATGTACTGGTGAACACCAGCCTGCTCATGGATCTACAATTACTGTTAATAACGAGATTGTTGTGGCCATGCTCGACAGCCTAGGCAACTGGATTGGAAATTCTCTGTTTGGACACCTTGACAAATTGATGCAAAGGGATGGCGGTGAAGTTTCAGCTGGGGCTGAATACTTTCCTTTAGTTCAAGCTTCTGAGAAGGAATTGATTCGTATTGCAGCAATACAAAAATGCGCCAGGTACCCATATAACAATTTTTTGCATCACCACATAGAGAACATAATTGTATCATGTTTGGAAAGCAAAAATGGGCCTCTTGTACAACATCTTCTTCGTGAATGTGATCTTGTCGGAAAAATACTTGAAGCAGAAAAGAATTTCACACCGGCCGCTGATTCATTTATGCCAACAATTCCTGCTAAGGGTAGATCCCCACCCAGGAACGGCAATATTGGACATTTGACATGTATATCCAACAAAATCATTCAACTGGGAAACAACAATAGGGAGATTCAGGCATATCTGCAGGAAAACAGTGTCTGGACTGAATGGCATACAGAAGTCCTATTAAAGCGTAATGCAGTGGAGAATGTCTCCCAGTGGGCGTGCGGGAAGGAAATTTTCTTTTTTTGCGAAACAATCCCCAGCTCTCTCCGTTCTCTCTCTTCCTTCGACCCTCGGACCCGTCGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAPS

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

6.37

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAPS PF04499 106 - 228 1.4e-22 SIT4 phosphatase-associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 778
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 3 cut(s) 237, 480, 699
AclWI GGATC 2 cut(s) 133, 513
AcoI YGGCCR 2 cut(s) 159, 477
AcsI RAATTY 3 cut(s) 193, 466, 708
AfaI GTAC 3 cut(s) 100, 332, 411
AfiI CCNNNNNNNGG 5 cut(s) 73, 122, 512, 528, 533
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 3 cut(s) 278, 455, 578
AjnI CCWGG 2 cut(s) 326, 527
AluBI AGCT 5 cut(s) 36, 80, 251, 281, 738
AluI AGCT 5 cut(s) 36, 80, 251, 281, 738
Alw26I GTCTC 1 cut(s) 688
AlwI GGATC 2 cut(s) 133, 513
AlwNI CAGNNNCTG 1 cut(s) 630
AoxI GGCC 3 cut(s) 159, 401, 477
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 3 cut(s) 193, 466, 708
Asp700I GAANNNNTTC 2 cut(s) 264, 297
Asp718I GGTACC 1 cut(s) 330
AspA2I CCTAGG 1 cut(s) 175
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 401, 771
AsuHPI GGTGA 3 cut(s) 116, 251, 347
AvaII GGWCC 1 cut(s) 771
AvrII CCTAGG 1 cut(s) 175
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 2 cut(s) 328, 529
BcoDI GTCTC 1 cut(s) 688
BfaI CTAG 2 cut(s) 33, 176
BfmI CTRYAG 1 cut(s) 614
BisI GCNGC 2 cut(s) 309, 480
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 2 cut(s) 310, 481
Bme1390I CCNGG 2 cut(s) 328, 529
Bme18I GGWCC 1 cut(s) 771
BmgT120I GGNCC 2 cut(s) 401, 771
BmiI GGNNCC 2 cut(s) 332, 773
BmrFI CCNGG 2 cut(s) 328, 529
BmrI ACTGGG 2 cut(s) 590, 682
BmsI GCATC 3 cut(s) 60, 213, 361
BmuI ACTGGG 2 cut(s) 590, 682
BplI GAGNNNNNCTC 2 cut(s) 668, 700
Bpu10I CCTNAGC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 175, 527, 767
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 122, 512, 528, 533
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 4 cut(s) 106, 188, 585, 688
BseBI CCWGG 2 cut(s) 328, 529
BseDI CCNNGG 3 cut(s) 175, 527, 767
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 5 cut(s) 73, 122, 512, 528, 533
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 4 cut(s) 106, 188, 585, 688
BseX3I CGGCCG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 320
BseYI CCCAGC 2 cut(s) 251, 734
Bsh1285I CGRYCG 1 cut(s) 480
BshFI GGCC 3 cut(s) 161, 403, 479
BshNI GGYRCC 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 480
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 5 cut(s) 73, 122, 512, 528, 533
BsmAI GTCTC 1 cut(s) 688
BsnI GGCC 3 cut(s) 161, 403, 479
Bsp1407I TGTACA 1 cut(s) 409
Bsp143I GATC 3 cut(s) 125, 433, 518
BspACI CCGC 3 cut(s) 237, 480, 699
BspANI GGCC 3 cut(s) 161, 403, 479
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 332, 773
BspMAI CTGCAG 1 cut(s) 618
BspPI GGATC 2 cut(s) 133, 513
BspT107I GGYRCC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 475
BsrGI TGTACA 1 cut(s) 409
BsrI ACTGG 4 cut(s) 106, 188, 585, 688
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 175, 527, 767
BssMI GATC 3 cut(s) 125, 433, 518
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 328, 529
Bst4CI ACNGT 3 cut(s) 68, 139, 626
Bst6I CTCTTC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 117, 697
BstDEI CTNAG 3 cut(s) 285, 510, 783
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 128, 436, 521
BstMAI GTCTC 1 cut(s) 688
BstMBI GATC 3 cut(s) 125, 433, 518
BstMCI CGRYCG 1 cut(s) 480
BstNI CCWGG 2 cut(s) 328, 529
BstNSI RCATGY 2 cut(s) 99, 558
BstSCI CCNGG 2 cut(s) 326, 527
BstSFI CTRYAG 1 cut(s) 614
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 125, 518
BstYI RGATCY 2 cut(s) 125, 518
BstZI CGGCCG 1 cut(s) 477
BsuRI GGCC 3 cut(s) 161, 403, 479
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 3 cut(s) 631, 678, 695
Cac8I GCNNGC 2 cut(s) 117, 697
CaiI CAGNNNCTG 1 cut(s) 630
CfoI GCGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 2 cut(s) 401, 771
Csp6I GTAC 3 cut(s) 99, 331, 410
CviAII CATG 5 cut(s) 96, 122, 163, 381, 555
CviQI GTAC 3 cut(s) 99, 331, 410
DdeI CTNAG 3 cut(s) 285, 510, 783
DpnI GATC 3 cut(s) 127, 435, 520
DpnII GATC 3 cut(s) 125, 433, 518
DrdI GACNNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 778
EaeI YGGCCR 2 cut(s) 159, 477
EagI CGGCCG 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 760
EclXI CGGCCG 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 771
Eco52I CGGCCG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 326, 527
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 99, 125, 166, 384, 558
FatI CATG 5 cut(s) 95, 121, 162, 380, 554
FauI CCCGC 1 cut(s) 692
Fnu4HI GCNGC 2 cut(s) 309, 480
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 309, 480
FspBI CTAG 2 cut(s) 33, 176
GlaI GCGC 1 cut(s) 325
GluI GCNGC 2 cut(s) 309, 480
GsaI CCCAGC 2 cut(s) 255, 738
HaeIII GGCC 3 cut(s) 161, 403, 479
HapII CCGG 1 cut(s) 476
HhaI GCGC 1 cut(s) 326
Hin1II CATG 5 cut(s) 99, 125, 166, 384, 558
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HindIII AAGCTT 2 cut(s) 78, 279
HinfI GANTC 4 cut(s) 8, 298, 485, 601
HpaII CCGG 1 cut(s) 476
HphI GGTGA 3 cut(s) 116, 251, 347
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 3 cut(s) 286, 443, 771
Hpy188III TCNNGA 2 cut(s) 425, 631
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 780
HpyAV CCTTC 3 cut(s) 283, 697, 769
HpyCH4III ACNGT 3 cut(s) 68, 139, 626
HpyCH4V TGCA 7 cut(s) 51, 95, 226, 308, 352, 616, 671
HpyF3I CTNAG 3 cut(s) 285, 510, 783
Hsp92II CATG 5 cut(s) 99, 125, 166, 384, 558
HspAI GCGC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 334
Kzo9I GATC 3 cut(s) 125, 433, 518
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 3 cut(s) 60, 213, 361
MaeI CTAG 2 cut(s) 33, 176
MalI GATC 3 cut(s) 127, 435, 520
MboI GATC 3 cut(s) 125, 433, 518
MboII GAAGA 3 cut(s) 410, 413, 747
MflI RGATCY 2 cut(s) 125, 518
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 9 cut(s) 132, 193, 218, 293, 343, 372, 466, 501, 708
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 421, 588
MnlI CCTC 3 cut(s) 66, 414, 777
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 2 cut(s) 264, 297
MscI TGGCCA 1 cut(s) 161
MseI TTAA 2 cut(s) 141, 659
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 251, 482
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 328, 529
MvaI CCWGG 2 cut(s) 328, 529
NdeII GATC 3 cut(s) 125, 433, 518
NlaIII CATG 5 cut(s) 99, 125, 166, 384, 558
NlaIV GGNNCC 2 cut(s) 332, 773
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 2 cut(s) 99, 558
PciI ACATGT 1 cut(s) 554
PdmI GAANNNNTTC 2 cut(s) 264, 297
PfeI GAWTC 3 cut(s) 298, 485, 601
PkrI GCNGC 2 cut(s) 310, 481
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 326, 527
PspFI CCCAGC 2 cut(s) 251, 734
PspGI CCWGG 2 cut(s) 326, 527
PspN4I GGNNCC 2 cut(s) 332, 773
PspPI GGNCC 2 cut(s) 401, 771
PstI CTGCAG 1 cut(s) 618
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 125, 518
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 100, 332, 411
RsaNI GTAC 3 cut(s) 99, 331, 410
SaqAI TTAA 2 cut(s) 141, 659
SatI GCNGC 2 cut(s) 309, 480
Sau3AI GATC 3 cut(s) 125, 433, 518
Sau96I GGNCC 2 cut(s) 401, 771
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 328, 529
SetI ASST 7 cut(s) 38, 82, 213, 253, 283, 332, 740
SfaNI GCATC 3 cut(s) 60, 213, 361
SfcI CTRYAG 1 cut(s) 614
SinI GGWCC 1 cut(s) 771
Sse9I AATT 9 cut(s) 132, 193, 218, 293, 343, 372, 466, 501, 708
SsiI CCGC 3 cut(s) 237, 480, 699
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 33, 176
StyD4I CCNGG 2 cut(s) 326, 527
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 68, 139, 626
TaqI TCGA 2 cut(s) 168, 762
TaqII GACCGA 1 cut(s) 768
TasI AATT 9 cut(s) 132, 193, 218, 293, 343, 372, 466, 501, 708
TatI WGTACW 2 cut(s) 98, 409
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 3 cut(s) 298, 485, 601
Tru1I TTAA 2 cut(s) 141, 659
Tru9I TTAA 2 cut(s) 141, 659
TscAI CASTG 3 cut(s) 631, 678, 695
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 3 cut(s) 631, 678, 695
VpaK11BI GGWCC 1 cut(s) 771
XapI RAATTY 3 cut(s) 193, 466, 708
XceI RCATGY 2 cut(s) 99, 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 264, 297
XspI CTAG 2 cut(s) 33, 176
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.