Rorug05G0247500

Serine threonine-protein phosphatase 6 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002321
Physical Location & Seq
Reverse (-)
27124666 .. 27129093
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0247500.1

Sequence Viewer

Length: 621 bp
ATGGCTGCCAAAGCTTCGTGCTTTTTCTGCAAGGCCGAGAGTGATCAGTTCGTTAATGGCTGGAAGCTCAAGGATGGGTCTTTCGCCCAGCTCTGCAAGAAATGCGGGTTTGCTTATGTGAATGGTATATTTTGTGAAACTTTTCACATGGAAGTGGAAGGCTGGAGAGACTGTGCTGTTTGTGGGAAGCTACTCCATTGTGGGTGCATTATGTCACGCCACAAGTATGCACCACTGGATTTCGGAGGTGTAGGTTGCTCAAAATGCTTACTAGAAGTTGATCAATCTATTGCTTCAGGCCAAATGACCAGAATGCTGAAAGAAATAGTTGCTAAGTACAAGATGGATCCAACAGTTTCATCTGATCCTACTAAGAAAGCTGTCGAGTCCCTTTTTCCTGGATCTTTACAAGCTCCAGCTCCTCAGATTGGAGAAGAATCCAATATGGATGCATCTAAAGGAGATAAAGCTTGTGAAGCCAAAGTAGGCAGTGAAACACCTCAAGTGGATGCCTCCACAGGAAATGATTTACACCCTGGCAATCTACCGAAGATGACAAGTGCTGAGCAACACCAAAAAGTCTCCGGAAAGTATCCATTAATCTTGTGTCATAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAPS

Protein Analysis

206

Amino Acids

22.37

Weight (kDa)

7.48

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 47 - 91 1.4e-20 VAL1-like, N-terminal zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 1 cut(s) 105
AclWI GGATC 4 cut(s) 341, 354, 359, 409
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 428
AjnI CCWGG 2 cut(s) 397, 535
AluBI AGCT 8 cut(s) 14, 67, 91, 190, 380, 413, 419, 470
AluI AGCT 8 cut(s) 14, 67, 91, 190, 380, 413, 419, 470
Alw26I GTCTC 2 cut(s) 162, 586
AlwI GGATC 4 cut(s) 341, 354, 359, 409
Aor13HI TCCGGA 1 cut(s) 584
AoxI GGCC 2 cut(s) 33, 298
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 141
BamHI GGATCC 1 cut(s) 346
BccI CCATC 2 cut(s) 68, 337
BciT130I CCWGG 2 cut(s) 399, 537
BciVI GTATCC 1 cut(s) 603
BclI TGATCA 2 cut(s) 43, 280
BcoDI GTCTC 2 cut(s) 162, 586
BfaI CTAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 399, 537
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 399, 537
BmsI GCATC 3 cut(s) 439, 461, 499
BpmI CTGGAG 2 cut(s) 184, 399
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 2 cut(s) 53, 486
BsaJI CCNNGG 1 cut(s) 535
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 584
BseBI CCWGG 2 cut(s) 399, 537
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 79, 454, 514
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 437, 555
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 2 cut(s) 35, 300
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 162, 586
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 2 cut(s) 35, 300
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 5 cut(s) 43, 280, 346, 364, 401
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 35, 300
BspCNI CTCAG 2 cut(s) 436, 556
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 4 cut(s) 341, 354, 359, 409
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 5 cut(s) 43, 280, 346, 364, 401
Bst2UI CCWGG 2 cut(s) 399, 537
Bst4CI ACNGT 2 cut(s) 173, 355
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 4 cut(s) 333, 372, 423, 564
BstF5I GGATG 3 cut(s) 79, 454, 514
BstKTI GATC 5 cut(s) 46, 283, 349, 367, 404
BstMAI GTCTC 2 cut(s) 162, 586
BstMBI GATC 5 cut(s) 43, 280, 346, 364, 401
BstMWI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
BstNI CCWGG 2 cut(s) 399, 537
BstSCI CCNGG 2 cut(s) 397, 535
BstX2I RGATCY 2 cut(s) 346, 401
BstYI RGATCY 2 cut(s) 346, 401
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 2 cut(s) 35, 300
BtsCI GGATG 3 cut(s) 79, 454, 514
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 233, 496
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 148
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 4 cut(s) 333, 372, 423, 564
DpnI GATC 5 cut(s) 45, 282, 348, 366, 403
DpnII GATC 5 cut(s) 43, 280, 346, 364, 401
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 397, 535
EcoT22I ATGCAT 1 cut(s) 454
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 117, 128, 149, 212, 228, 446, 612
FaqI GGGAC 1 cut(s) 373
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 2 cut(s) 43, 280
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 86, 461, 521
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 184, 399
HaeIII GGCC 2 cut(s) 35, 300
HapII CCGG 1 cut(s) 585
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 2 cut(s) 12, 468
HinfI GANTC 2 cut(s) 386, 437
HpaII CCGG 1 cut(s) 585
Hpy188I TCNGA 3 cut(s) 245, 364, 426
Hpy188III TCNNGA 1 cut(s) 585
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 173, 355
HpyCH4V TGCA 5 cut(s) 30, 96, 207, 230, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
HpyF3I CTNAG 4 cut(s) 333, 372, 423, 564
Hsp92II CATG 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 584
Ksp22I TGATCA 2 cut(s) 43, 280
Kzo9I GATC 5 cut(s) 43, 280, 346, 364, 401
LmnI GCTCC 2 cut(s) 418, 424
LweI GCATC 3 cut(s) 439, 461, 499
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 213
MalI GATC 5 cut(s) 45, 282, 348, 366, 403
MboI GATC 5 cut(s) 43, 280, 346, 364, 401
MboII GAAGA 2 cut(s) 446, 562
MflI RGATCY 2 cut(s) 346, 401
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 239, 432, 510, 523
Mph1103I ATGCAT 1 cut(s) 454
MroI TCCGGA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 54, 599
MslI CAYNNNNRTG 2 cut(s) 152, 225
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 399, 537
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 2 cut(s) 399, 537
MwoI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
NdeII GATC 5 cut(s) 43, 280, 346, 364, 401
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 454
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PshBI ATTAAT 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 397, 535
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 2 cut(s) 397, 535
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 2 cut(s) 346, 401
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 2 cut(s) 152, 225
SaqAI TTAA 2 cut(s) 54, 599
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 43, 280, 346, 364, 401
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 399, 537
SfaNI GCATC 3 cut(s) 439, 461, 499
SmiMI CAYNNNNRTG 2 cut(s) 152, 225
SmlI CTYRAG 2 cut(s) 68, 501
SmoI CTYRAG 2 cut(s) 68, 501
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 397, 535
TaaI ACNGT 2 cut(s) 173, 355
TaqI TCGA 1 cut(s) 384
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 2 cut(s) 54, 599
Tru9I TTAA 2 cut(s) 54, 599
TscAI CASTG 2 cut(s) 240, 496
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 2 cut(s) 240, 496
VspI ATTAAT 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.